Wall clock time and date at job start Tue Mar 31 2020 22:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34637 * 116.99680 * 2 1 4 4 O 1.21345 * 119.99801 * 0.02562 * 3 2 1 5 5 C 1.48659 * 119.99719 * 179.97438 * 3 2 1 6 6 N 1.30970 * 119.36292 * 5.65333 * 5 3 2 7 7 C 1.34606 * 120.71670 * 180.27827 * 6 5 3 8 8 N 1.33448 * 120.26651 * 179.72979 * 7 6 5 9 9 C 1.34414 * 120.00338 * 5.23427 * 8 7 6 10 10 C 1.40256 * 119.99835 * 353.33866 * 9 8 7 11 11 H 1.08005 * 120.00258 * 309.87882 * 10 9 8 12 12 C 1.40424 * 120.00050 * 129.88298 * 10 9 8 13 13 N 1.30520 * 120.00046 * 163.95514 * 12 10 9 14 14 Si 1.86800 * 119.99600 * 343.95556 * 12 10 9 15 15 H 1.48497 * 109.47197 * 96.22222 * 14 12 10 16 16 H 1.48502 * 109.46860 * 216.21877 * 14 12 10 17 17 H 1.48504 * 109.47295 * 336.21869 * 14 12 10 18 18 C 1.46288 * 119.99899 * 173.34234 * 9 8 7 19 19 C 1.43206 * 119.99749 * 173.17745 * 18 9 8 20 20 N 6.80153 * 124.10209 * 188.79987 * 2 1 3 21 21 C 1.43201 * 120.00188 * 353.17848 * 18 9 8 22 22 N 8.23096 * 156.35886 * 197.82505 * 2 1 3 23 23 C 1.41738 * 119.45810 * 359.46314 * 7 6 5 24 24 C 1.35480 * 118.80167 * 0.25035 * 23 7 6 25 25 C 1.50696 * 120.37406 * 180.02562 * 24 23 7 26 26 C 1.53000 * 117.50079 * 33.62083 * 25 24 23 27 27 C 1.53000 * 117.49948 * 324.99739 * 25 24 23 28 28 N 1.36046 * 119.35815 * 185.36364 * 5 3 2 29 29 H 0.97003 * 119.75842 * 0.02562 * 28 5 3 30 30 H 1.09007 * 109.46962 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47385 * 300.00133 * 1 2 3 32 32 H 1.09004 * 109.47012 * 60.00518 * 1 2 3 33 33 H 0.96998 * 119.99770 * 180.02562 * 13 12 10 34 34 H 1.07996 * 120.59820 * 180.26613 * 23 7 6 35 35 H 1.08998 * 115.54800 * 179.32375 * 25 24 23 36 36 H 1.09001 * 117.49476 * 359.97438 * 26 25 24 37 37 H 1.08997 * 117.50145 * 145.01659 * 26 25 24 38 38 H 1.09001 * 117.49752 * 214.97905 * 27 25 24 39 39 H 1.08995 * 117.49616 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4022 2.2173 0.0005 5 6 3.5478 1.2775 0.0006 6 7 4.2486 0.1767 -0.1114 7 6 5.5941 0.2150 -0.1084 8 7 6.2993 -0.9127 -0.2176 9 6 5.6703 -2.0802 -0.4366 10 6 4.2692 -2.1374 -0.4114 11 1 3.7262 -1.7140 0.4208 12 6 3.5721 -2.7453 -1.4680 13 7 2.3203 -3.0819 -1.3159 14 14 4.4367 -3.0722 -3.0914 15 1 4.9312 -4.4722 -3.1157 16 1 3.4830 -2.8647 -4.2106 17 1 5.5830 -2.1397 -3.2383 18 6 6.4472 -3.2911 -0.7012 19 6 5.7883 -4.5595 -0.7895 20 7 5.2654 -5.5656 -0.8616 21 6 7.8666 -3.2082 -0.8720 22 7 8.9922 -3.1422 -1.0104 23 6 6.2556 1.4633 0.0060 24 6 5.5104 2.5894 0.1149 25 6 6.1769 3.9354 0.2378 26 6 7.4995 4.1392 -0.5040 27 6 7.4900 4.0046 1.0201 28 7 4.1520 2.4913 0.1114 29 1 3.6114 3.2930 0.1892 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8390 -3.5022 -2.0457 34 1 7.3343 1.5158 0.0060 35 1 5.5029 4.7890 0.3092 36 1 7.8876 3.2995 -1.0806 37 1 7.6957 5.1270 -0.9209 38 1 7.6800 4.9040 1.6059 39 1 7.8719 3.0766 1.4454 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169077787.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:34 Heat of formation + Delta-G solvation = 108.042694 kcal Electronic energy + Delta-G solvation = -28695.174143 eV Core-core repulsion = 24606.718017 eV Total energy + Delta-G solvation = -4088.456127 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.49673 -40.13304 -37.89300 -37.09398 -36.48123 -35.22193 -34.46275 -33.86414 -32.97577 -31.88388 -29.07395 -28.10929 -26.76231 -25.55756 -24.84175 -22.69936 -22.56965 -20.96805 -20.06555 -18.86814 -18.47495 -18.22432 -17.69406 -17.44290 -16.73268 -16.62738 -15.88641 -15.31092 -14.97376 -14.82639 -14.11759 -13.87215 -13.57461 -13.35699 -13.19108 -13.08194 -12.83161 -12.36749 -12.21077 -12.12488 -12.07808 -11.88421 -11.68933 -11.59328 -11.37723 -11.29640 -11.11574 -10.91262 -10.83591 -10.79512 -10.64795 -10.53115 -10.33989 -9.93359 -9.62007 -9.34805 -8.79737 -8.59858 -7.44410 -6.31852 -4.93148 0.25345 1.05273 1.84533 2.07619 2.76263 3.05338 3.09928 3.13498 3.27498 3.54645 3.87778 4.02026 4.04365 4.12687 4.21771 4.33657 4.40540 4.48119 4.55760 4.60746 4.63749 4.92871 5.08066 5.13738 5.18022 5.34076 5.34656 5.43031 5.46221 5.59636 5.68281 5.80517 5.81169 5.82947 6.08693 6.31274 6.41161 6.53425 6.79152 6.96911 7.34571 7.43946 7.65047 7.78635 8.05110 8.23271 8.99565 9.30075 9.41072 9.44535 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.009034 B = 0.005655 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3098.618006 B = 4949.803503 C = 7445.838104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.294 6.294 3 C 0.532 3.468 4 O -0.506 6.506 5 C 0.355 3.645 6 N -0.428 5.428 7 C 0.313 3.687 8 N -0.481 5.481 9 C 0.268 3.732 10 C -0.286 4.286 11 H 0.134 0.866 12 C 0.078 3.922 13 N -0.720 5.720 14 Si 0.895 3.105 15 H -0.241 1.241 16 H -0.283 1.283 17 H -0.240 1.240 18 C -0.294 4.294 19 C 0.312 3.688 20 N -0.529 5.529 21 C 0.328 3.672 22 N -0.547 5.547 23 C -0.175 4.175 24 C 0.168 3.832 25 C -0.129 4.129 26 C -0.158 4.158 27 C -0.158 4.158 28 N -0.607 5.607 29 H 0.419 0.581 30 H 0.112 0.888 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.298 0.702 34 H 0.154 0.846 35 H 0.120 0.880 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.144 20.310 2.551 21.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.205 6.205 3 C 0.373 3.627 4 O -0.393 6.393 5 C 0.081 3.919 6 N -0.154 5.154 7 C 0.053 3.947 8 N -0.199 5.199 9 C 0.146 3.854 10 C -0.315 4.315 11 H 0.151 0.849 12 C -0.152 4.152 13 N -0.338 5.338 14 Si 0.718 3.282 15 H -0.164 1.164 16 H -0.209 1.209 17 H -0.163 1.163 18 C -0.313 4.313 19 C 0.006 3.994 20 N -0.212 5.212 21 C 0.021 3.979 22 N -0.230 5.230 23 C -0.205 4.205 24 C 0.060 3.940 25 C -0.148 4.148 26 C -0.196 4.196 27 C -0.196 4.196 28 N -0.228 5.228 29 H 0.257 0.743 30 H 0.131 0.869 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.172 0.828 35 H 0.138 0.862 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.036 17.793 2.120 18.613 hybrid contribution -1.134 1.311 -0.494 1.803 sum -6.170 19.104 1.626 20.141 Atomic orbital electron populations 1.23440 0.75195 1.04827 1.02016 1.86875 1.23442 1.28771 1.81391 1.20290 0.86401 0.82828 0.73200 1.90844 1.65811 1.36366 1.46302 1.21374 0.91892 0.82245 0.96420 1.70413 1.09499 1.21431 1.14077 1.19945 0.84206 0.93301 0.97296 1.69687 1.35053 0.97229 1.17928 1.18682 0.89834 0.87307 0.89612 1.21105 0.91153 1.15803 1.03399 0.84896 1.26472 0.95010 0.91049 1.02629 1.69493 1.09803 1.20010 1.34497 0.86377 0.80365 0.83443 0.78050 1.16425 1.20934 1.16302 1.13250 0.82988 0.85538 1.49509 1.24621 0.92401 0.91589 0.90786 1.81028 1.08912 1.11861 1.19434 1.24922 0.91520 0.91548 0.89892 1.80967 1.12560 1.09470 1.19990 1.20953 1.01616 0.89307 1.08580 1.19387 0.81292 0.95335 0.97987 1.20881 0.91511 0.93277 1.09170 1.23210 0.96919 1.04263 0.95172 1.23205 0.97118 1.04595 0.94656 1.41653 1.06033 1.09044 1.66094 0.74280 0.86927 0.91878 0.91839 0.89082 0.82823 0.86163 0.87348 0.87789 0.87808 0.87369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.49 16 2 O -0.29 -4.41 10.38 -40.32 -0.42 -4.83 16 3 C 0.53 7.45 7.99 35.04 0.28 7.73 16 4 O -0.51 -6.79 16.22 -19.14 -0.31 -7.10 16 5 C 0.36 5.11 7.69 -155.07 -1.19 3.92 16 6 N -0.43 -7.74 5.87 -10.11 -0.06 -7.79 16 7 C 0.31 5.85 7.36 -157.23 -1.16 4.69 16 8 N -0.48 -10.74 9.92 -9.10 -0.09 -10.83 16 9 C 0.27 6.44 5.42 -82.74 -0.45 5.99 16 10 C -0.29 -6.68 6.50 -38.00 -0.25 -6.93 16 11 H 0.13 3.13 6.67 -52.48 -0.35 2.78 16 12 C 0.08 1.82 4.78 -17.29 -0.08 1.73 16 13 N -0.72 -16.02 13.91 55.57 0.77 -15.24 16 14 Si 0.90 20.44 24.64 -169.99 -4.19 16.25 16 15 H -0.24 -5.90 6.06 56.52 0.34 -5.56 16 16 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 17 H -0.24 -5.69 7.10 56.52 0.40 -5.29 16 18 C -0.29 -7.51 4.57 -102.81 -0.47 -7.98 16 19 C 0.31 8.22 10.86 -22.47 -0.24 7.98 16 20 N -0.53 -14.27 18.08 41.84 0.76 -13.51 16 21 C 0.33 8.53 14.94 -22.47 -0.34 8.19 16 22 N -0.55 -14.38 18.54 41.84 0.78 -13.61 16 23 C -0.18 -2.47 8.72 -39.23 -0.34 -2.81 16 24 C 0.17 1.80 6.64 -81.64 -0.54 1.25 16 25 C -0.13 -0.91 6.22 -91.77 -0.57 -1.48 16 26 C -0.16 -1.04 9.84 -26.73 -0.26 -1.30 16 27 C -0.16 -1.01 9.84 -26.73 -0.26 -1.28 16 28 N -0.61 -6.55 5.31 -6.82 -0.04 -6.58 16 29 H 0.42 3.36 8.14 -40.82 -0.33 3.03 16 30 H 0.11 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.30 6.12 8.29 -40.82 -0.34 5.79 16 34 H 0.15 1.99 6.53 -52.49 -0.34 1.65 16 35 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.11 0.84 7.30 -51.93 -0.38 0.46 16 37 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.11 0.80 7.38 -51.93 -0.38 0.42 16 LS Contribution 358.20 15.07 5.40 5.40 Total: -1.00 -31.86 358.20 -5.73 -37.59 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -3.52 Total: -0.94 kcal Atomic # 6 Polarization: 26.01 SS G_CDS: -4.81 Total: 21.20 kcal Atomic # 7 Polarization: -69.69 SS G_CDS: 2.12 Total: -67.57 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -0.73 Total: -11.93 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.19 Total: 16.25 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.86 -5.73 -37.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169077787.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.629 kcal (2) G-P(sol) polarization free energy of solvation -31.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds