Wall clock time and date at job start Tue Mar 31 2020 22:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34637 * 116.99680 * 2 1 4 4 O 1.21345 * 119.99801 * 0.02562 * 3 2 1 5 5 C 1.48659 * 119.99719 * 179.97438 * 3 2 1 6 6 N 1.30970 * 119.36292 * 5.65333 * 5 3 2 7 7 C 1.34606 * 120.71670 * 180.27827 * 6 5 3 8 8 N 1.33448 * 120.26651 * 179.72979 * 7 6 5 9 9 C 1.34414 * 120.00338 * 5.23427 * 8 7 6 10 10 C 1.40256 * 119.99835 * 353.33866 * 9 8 7 11 11 H 1.08005 * 120.00258 * 309.87882 * 10 9 8 12 12 C 1.40424 * 120.00050 * 129.88298 * 10 9 8 13 13 N 1.30520 * 120.00046 * 163.95514 * 12 10 9 14 14 Si 1.86800 * 119.99600 * 343.95556 * 12 10 9 15 15 H 1.48497 * 109.47197 * 96.22222 * 14 12 10 16 16 H 1.48502 * 109.46860 * 216.21877 * 14 12 10 17 17 H 1.48504 * 109.47295 * 336.21869 * 14 12 10 18 18 C 1.46288 * 119.99899 * 173.34234 * 9 8 7 19 19 C 1.43206 * 119.99749 * 173.17745 * 18 9 8 20 20 N 6.80153 * 124.10209 * 188.79987 * 2 1 3 21 21 C 1.43201 * 120.00188 * 353.17848 * 18 9 8 22 22 N 8.23096 * 156.35886 * 197.82505 * 2 1 3 23 23 C 1.41738 * 119.45810 * 359.46314 * 7 6 5 24 24 C 1.35480 * 118.80167 * 0.25035 * 23 7 6 25 25 C 1.50696 * 120.37406 * 180.02562 * 24 23 7 26 26 C 1.53000 * 117.50079 * 33.62083 * 25 24 23 27 27 C 1.53000 * 117.49948 * 324.99739 * 25 24 23 28 28 N 1.36046 * 119.35815 * 185.36364 * 5 3 2 29 29 H 0.97003 * 119.75842 * 0.02562 * 28 5 3 30 30 H 1.09007 * 109.46962 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47385 * 300.00133 * 1 2 3 32 32 H 1.09004 * 109.47012 * 60.00518 * 1 2 3 33 33 H 0.96998 * 119.99770 * 180.02562 * 13 12 10 34 34 H 1.07996 * 120.59820 * 180.26613 * 23 7 6 35 35 H 1.08998 * 115.54800 * 179.32375 * 25 24 23 36 36 H 1.09001 * 117.49476 * 359.97438 * 26 25 24 37 37 H 1.08997 * 117.50145 * 145.01659 * 26 25 24 38 38 H 1.09001 * 117.49752 * 214.97905 * 27 25 24 39 39 H 1.08995 * 117.49616 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4022 2.2173 0.0005 5 6 3.5478 1.2775 0.0006 6 7 4.2486 0.1767 -0.1114 7 6 5.5941 0.2150 -0.1084 8 7 6.2993 -0.9127 -0.2176 9 6 5.6703 -2.0802 -0.4366 10 6 4.2692 -2.1374 -0.4114 11 1 3.7262 -1.7140 0.4208 12 6 3.5721 -2.7453 -1.4680 13 7 2.3203 -3.0819 -1.3159 14 14 4.4367 -3.0722 -3.0914 15 1 4.9312 -4.4722 -3.1157 16 1 3.4830 -2.8647 -4.2106 17 1 5.5830 -2.1397 -3.2383 18 6 6.4472 -3.2911 -0.7012 19 6 5.7883 -4.5595 -0.7895 20 7 5.2654 -5.5656 -0.8616 21 6 7.8666 -3.2082 -0.8720 22 7 8.9922 -3.1422 -1.0104 23 6 6.2556 1.4633 0.0060 24 6 5.5104 2.5894 0.1149 25 6 6.1769 3.9354 0.2378 26 6 7.4995 4.1392 -0.5040 27 6 7.4900 4.0046 1.0201 28 7 4.1520 2.4913 0.1114 29 1 3.6114 3.2930 0.1892 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8390 -3.5022 -2.0457 34 1 7.3343 1.5158 0.0060 35 1 5.5029 4.7890 0.3092 36 1 7.8876 3.2995 -1.0806 37 1 7.6957 5.1270 -0.9209 38 1 7.6800 4.9040 1.6059 39 1 7.8719 3.0766 1.4454 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169077787.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:34 Heat of formation + Delta-G solvation = 88.280262 kcal Electronic energy + Delta-G solvation = -28696.031106 eV Core-core repulsion = 24606.718017 eV Total energy + Delta-G solvation = -4089.313090 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.74592 -41.26385 -39.05370 -38.20366 -37.73370 -36.96469 -36.45916 -35.51799 -34.35424 -33.23317 -30.64779 -29.09691 -28.46262 -26.73630 -25.97693 -23.81933 -23.19278 -22.07184 -21.47638 -20.25455 -20.01523 -19.57103 -19.22896 -18.63224 -17.89638 -17.74794 -17.29581 -16.72401 -16.20380 -15.45328 -15.28072 -15.12988 -15.02813 -14.88680 -14.71289 -14.43768 -14.29808 -14.24232 -13.87292 -13.58468 -13.42719 -13.16314 -13.03295 -12.87404 -12.72784 -12.63846 -12.44636 -12.40186 -12.24063 -12.19280 -12.06268 -11.82025 -11.43386 -11.33369 -10.96255 -10.78900 -10.31267 -10.01918 -9.11992 -7.99620 -6.70212 -1.06360 -0.18030 0.69373 0.77044 1.16578 1.32707 1.35497 1.55469 1.97641 2.09653 2.15423 2.29068 2.50836 2.56652 2.76108 2.91073 3.05162 3.13037 3.47849 3.54262 3.83880 3.85880 3.88169 4.06290 4.08368 4.23647 4.38540 4.39224 4.49224 4.71225 4.78161 4.86244 4.90267 4.99450 5.04066 5.10145 5.15664 5.32683 5.37647 5.69575 5.80874 6.02793 6.11990 6.27071 6.49827 6.79630 7.20966 7.40588 7.57433 7.81326 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.009034 B = 0.005655 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3098.618006 B = 4949.803503 C = 7445.838104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.318 6.318 3 C 0.536 3.464 4 O -0.495 6.495 5 C 0.373 3.627 6 N -0.475 5.475 7 C 0.351 3.649 8 N -0.555 5.555 9 C 0.294 3.706 10 C -0.322 4.322 11 H 0.127 0.873 12 C 0.079 3.921 13 N -0.734 5.734 14 Si 0.910 3.090 15 H -0.270 1.270 16 H -0.259 1.259 17 H -0.260 1.260 18 C -0.324 4.324 19 C 0.318 3.682 20 N -0.556 5.556 21 C 0.330 3.670 22 N -0.566 5.566 23 C -0.210 4.210 24 C 0.218 3.782 25 C -0.137 4.137 26 C -0.154 4.154 27 C -0.151 4.151 28 N -0.571 5.571 29 H 0.442 0.558 30 H 0.116 0.884 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.303 0.697 34 H 0.165 0.835 35 H 0.159 0.841 36 H 0.093 0.907 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.272 25.828 3.234 27.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.229 6.229 3 C 0.375 3.625 4 O -0.382 6.382 5 C 0.099 3.901 6 N -0.202 5.202 7 C 0.093 3.907 8 N -0.277 5.277 9 C 0.171 3.829 10 C -0.351 4.351 11 H 0.144 0.856 12 C -0.150 4.150 13 N -0.354 5.354 14 Si 0.734 3.266 15 H -0.195 1.195 16 H -0.184 1.184 17 H -0.184 1.184 18 C -0.344 4.344 19 C 0.013 3.987 20 N -0.240 5.240 21 C 0.025 3.975 22 N -0.250 5.250 23 C -0.239 4.239 24 C 0.106 3.894 25 C -0.156 4.156 26 C -0.192 4.192 27 C -0.188 4.188 28 N -0.190 5.190 29 H 0.284 0.716 30 H 0.135 0.865 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.115 0.885 34 H 0.182 0.818 35 H 0.177 0.823 36 H 0.111 0.889 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.253 23.414 2.803 24.396 hybrid contribution -0.859 0.346 -0.592 1.099 sum -7.112 23.760 2.210 24.900 Atomic orbital electron populations 1.23702 0.73086 1.05716 1.03449 1.86868 1.25667 1.29276 1.81136 1.20098 0.85963 0.82930 0.73471 1.90856 1.65477 1.35942 1.45898 1.21673 0.92526 0.82514 0.93428 1.70457 1.09537 1.23329 1.16861 1.20549 0.84783 0.93973 0.91414 1.69723 1.35335 0.97330 1.25322 1.18730 0.89918 0.87390 0.86903 1.20749 0.90683 1.19443 1.04239 0.85579 1.26408 0.95206 0.90927 1.02429 1.69463 1.09780 1.21414 1.34730 0.86229 0.80016 0.81005 0.79383 1.19516 1.18356 1.18395 1.13536 0.83007 0.86239 1.51577 1.24810 0.92004 0.91597 0.90267 1.80978 1.09599 1.12423 1.21019 1.25097 0.91705 0.91121 0.89545 1.80915 1.12774 1.10025 1.21307 1.21070 1.02681 0.88546 1.11568 1.20077 0.80654 0.96594 0.92038 1.21198 0.92394 0.91449 1.10539 1.23311 0.95393 1.05120 0.95338 1.23312 0.95352 1.05253 0.94900 1.41966 1.06711 1.09208 1.61122 0.71578 0.86541 0.90028 0.90705 0.88531 0.81758 0.82347 0.88897 0.85237 0.85158 0.88701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 10.56 113.37 1.20 1.85 16 2 O -0.32 -9.08 10.38 -55.45 -0.58 -9.66 16 3 C 0.54 13.49 7.99 70.61 0.56 14.05 16 4 O -0.49 -11.27 16.22 20.33 0.33 -10.94 16 5 C 0.37 9.69 7.69 137.04 1.05 10.74 16 6 N -0.47 -16.80 5.87 -185.89 -1.09 -17.89 16 7 C 0.35 12.99 7.36 134.84 0.99 13.98 16 8 N -0.56 -25.63 9.92 -182.71 -1.81 -27.44 16 9 C 0.29 14.79 5.42 41.33 0.22 15.02 16 10 C -0.32 -15.64 6.50 23.29 0.15 -15.48 16 11 H 0.13 6.18 6.67 -2.91 -0.02 6.16 16 12 C 0.08 3.80 4.78 85.42 0.41 4.21 16 13 N -0.73 -33.49 13.91 21.90 0.30 -33.18 16 14 Si 0.91 43.05 24.64 68.60 1.69 44.74 16 15 H -0.27 -14.02 6.06 99.48 0.60 -13.42 16 16 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 17 H -0.26 -12.97 7.10 99.48 0.71 -12.27 16 18 C -0.32 -17.45 4.57 -18.69 -0.09 -17.54 16 19 C 0.32 17.65 10.86 88.33 0.96 18.61 16 20 N -0.56 -31.43 18.08 19.01 0.34 -31.09 16 21 C 0.33 18.04 14.94 88.33 1.32 19.36 16 22 N -0.57 -30.90 18.54 19.00 0.35 -30.55 16 23 C -0.21 -5.45 8.72 22.50 0.20 -5.25 16 24 C 0.22 3.68 6.64 41.24 0.27 3.96 16 25 C -0.14 -1.11 6.22 -11.54 -0.07 -1.18 16 26 C -0.15 -1.26 9.84 30.59 0.30 -0.96 16 27 C -0.15 -1.17 9.84 30.59 0.30 -0.86 16 28 N -0.57 -9.59 5.31 -175.50 -0.93 -10.52 16 29 H 0.44 4.26 8.14 -92.71 -0.75 3.51 16 30 H 0.12 2.20 8.14 -2.38 -0.02 2.18 16 31 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.30 12.72 8.29 -92.71 -0.77 11.95 16 34 H 0.16 4.00 6.53 -2.91 -0.02 3.98 16 35 H 0.16 0.27 8.14 -2.39 -0.02 0.25 16 36 H 0.09 1.13 7.30 -2.39 -0.02 1.11 16 37 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.09 1.07 7.38 -2.39 -0.02 1.06 16 Total: -1.00 -74.96 358.20 6.70 -68.27 By element: Atomic # 1 Polarization: -2.54 SS G_CDS: 0.30 Total: -2.24 kcal Atomic # 6 Polarization: 52.72 SS G_CDS: 7.79 Total: 60.51 kcal Atomic # 7 Polarization: -147.84 SS G_CDS: -2.83 Total: -150.67 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.25 Total: -20.60 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 1.69 Total: 44.74 kcal Total: -74.96 6.70 -68.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169077787.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.546 kcal (2) G-P(sol) polarization free energy of solvation -74.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds