Wall clock time and date at job start Tue Mar 31 2020 22:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30634 * 1 3 3 Si 1.86804 * 119.99938 * 2 1 4 4 H 1.48490 * 109.47271 * 240.00082 * 3 2 1 5 5 H 1.48500 * 109.47042 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47039 * 119.99737 * 3 2 1 7 7 C 1.40133 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99889 * 179.97438 * 7 2 1 9 9 C 1.46169 * 119.99580 * 0.02562 * 7 2 1 10 10 O 1.21721 * 120.00441 * 0.02562 * 9 7 2 11 11 N 1.34781 * 119.99457 * 179.97438 * 9 7 2 12 12 C 1.38748 * 119.99638 * 179.97438 * 11 9 7 13 13 N 1.31840 * 119.78652 * 5.58551 * 12 11 9 14 14 C 1.33885 * 119.75053 * 179.97438 * 13 12 11 15 15 C 1.40544 * 120.89976 * 179.97438 * 14 13 12 16 16 C 1.36136 * 119.74280 * 180.02562 * 15 14 13 17 17 C 1.39330 * 120.93023 * 0.02562 * 16 15 14 18 18 C 1.36160 * 120.94290 * 359.97438 * 17 16 15 19 19 C 1.40493 * 119.75579 * 359.97438 * 18 17 16 20 20 N 1.33933 * 120.90928 * 180.22804 * 19 18 17 21 21 C 1.31594 * 119.80526 * 180.27401 * 20 19 18 22 22 N 1.39663 * 119.77170 * 179.77344 * 21 20 19 23 23 N 1.40319 * 126.86730 * 174.19711 * 22 21 20 24 24 N 1.28765 * 108.01006 * 179.97438 * 23 22 21 25 25 C 1.33392 * 109.93239 * 359.75028 * 24 23 22 26 26 C 1.34942 * 109.01757 * 0.40949 * 25 24 23 27 27 C 1.50697 * 126.61228 * 179.86823 * 26 25 24 28 28 N 1.46904 * 109.47283 * 94.68529 * 27 26 25 29 29 H 0.96998 * 119.99885 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00326 * 0.02562 * 11 9 7 31 31 H 1.08001 * 120.12664 * 0.02562 * 15 14 13 32 32 H 1.07996 * 119.53209 * 180.02562 * 16 15 14 33 33 H 1.08001 * 119.52878 * 180.02562 * 17 16 15 34 34 H 1.07994 * 120.12313 * 180.02562 * 18 17 16 35 35 H 1.08001 * 125.48921 * 180.29517 * 25 24 23 36 36 H 1.09002 * 109.47074 * 214.68782 * 27 26 25 37 37 H 1.09002 * 109.46877 * 334.68320 * 27 26 25 38 38 H 1.00896 * 110.99532 * 56.04538 * 28 27 26 39 39 H 1.00902 * 110.99762 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0940 1.6965 -1.2124 5 1 1.2753 2.7465 0.0006 6 1 3.0941 1.6965 1.2126 7 6 2.0071 -1.2136 0.0005 8 1 3.0871 -1.2135 0.0001 9 6 1.2762 -2.4794 0.0005 10 8 0.0590 -2.4795 -0.0004 11 7 1.9502 -3.6466 0.0005 12 6 1.2564 -4.8482 0.0011 13 7 -0.0573 -4.8460 -0.1098 14 6 -0.7259 -6.0060 -0.1097 15 6 -2.1263 -6.0318 -0.2260 16 6 -2.7824 -7.2246 -0.2227 17 6 -2.0852 -8.4251 -0.1049 18 6 -0.7285 -8.4385 0.0096 19 6 -0.0167 -7.2272 0.0090 20 7 1.3183 -7.2136 0.1158 21 6 1.9626 -6.0662 0.1183 22 7 3.3543 -6.0526 0.2345 23 7 4.1961 -4.9338 0.1408 24 7 5.4092 -5.3337 0.3034 25 6 5.4303 -6.6520 0.5056 26 6 4.1668 -7.1238 0.4621 27 6 3.7361 -8.5572 0.6379 28 7 3.3654 -8.7887 2.0404 29 1 -0.4850 0.8400 0.0004 30 1 2.9202 -3.6466 0.0009 31 1 -2.6798 -5.1089 -0.3175 32 1 -3.8585 -7.2405 -0.3126 33 1 -2.6285 -9.3585 -0.1053 34 1 -0.2014 -9.3767 0.0997 35 1 6.3161 -7.2463 0.6749 36 1 2.8781 -8.7599 -0.0030 37 1 4.5578 -9.2194 0.3651 38 1 2.6494 -8.1425 2.3364 39 1 3.0731 -9.7437 2.1841 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169308467.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:21 Heat of formation + Delta-G solvation = 170.799559 kcal Electronic energy + Delta-G solvation = -28978.502406 eV Core-core repulsion = 24925.060372 eV Total energy + Delta-G solvation = -4053.442034 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.47029 -41.14329 -38.37463 -37.11489 -35.54988 -34.58375 -34.11966 -32.89358 -32.38997 -30.61099 -30.12179 -29.43429 -26.68540 -25.97832 -24.90132 -24.09159 -22.60036 -21.90168 -21.19911 -20.42923 -18.97175 -18.33818 -17.54288 -16.86387 -16.60311 -16.09188 -15.95698 -15.44769 -15.37100 -15.11230 -14.63978 -14.47634 -14.34440 -13.98842 -13.88228 -13.73505 -13.17946 -12.96291 -12.60908 -12.34185 -12.00552 -11.82670 -11.65924 -11.49163 -11.39337 -11.27827 -11.19962 -11.02132 -10.73235 -10.64374 -10.36841 -9.61602 -9.35951 -9.20925 -8.93095 -8.87693 -8.45622 -7.66900 -7.48960 -6.37674 -4.85318 -0.03139 0.71732 1.31133 1.71187 2.13827 2.43551 2.90799 3.11433 3.14547 3.16726 3.59351 3.81692 4.00466 4.11025 4.11462 4.32024 4.47294 4.52128 4.61508 4.65068 4.74961 4.88899 4.99784 5.11663 5.23646 5.36387 5.43715 5.56168 5.60954 5.67142 5.93356 6.03413 6.11597 6.22314 6.39852 6.51461 6.71515 6.75596 7.10870 7.12284 7.26129 7.47921 7.62929 7.94746 8.01155 8.19286 8.80227 9.07874 10.31786 10.51270 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009740 B = 0.004728 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.976982 B = 5920.729522 C = 8640.884682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.085 3.915 3 Si 0.916 3.084 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.528 4.528 8 H 0.076 0.924 9 C 0.521 3.479 10 O -0.509 6.509 11 N -0.643 5.643 12 C 0.384 3.616 13 N -0.411 5.411 14 C 0.132 3.868 15 C -0.086 4.086 16 C -0.094 4.094 17 C -0.123 4.123 18 C -0.070 4.070 19 C 0.041 3.959 20 N -0.423 5.423 21 C 0.284 3.716 22 N -0.304 5.304 23 N -0.066 5.066 24 N -0.211 5.211 25 C -0.061 4.061 26 C 0.080 3.920 27 C 0.126 3.874 28 N -0.837 5.837 29 H 0.274 0.726 30 H 0.417 0.583 31 H 0.143 0.857 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.194 0.806 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.344 0.656 39 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.470 -19.206 0.533 19.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.136 4.136 3 Si 0.740 3.260 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.564 4.564 8 H 0.094 0.906 9 C 0.327 3.673 10 O -0.384 6.384 11 N -0.295 5.295 12 C 0.131 3.869 13 N -0.135 5.135 14 C 0.003 3.997 15 C -0.106 4.106 16 C -0.114 4.114 17 C -0.144 4.144 18 C -0.090 4.090 19 C -0.086 4.086 20 N -0.141 5.141 21 C 0.033 3.967 22 N -0.088 5.088 23 N -0.044 5.044 24 N -0.080 5.080 25 C -0.217 4.217 26 C -0.053 4.053 27 C -0.006 4.006 28 N -0.368 5.368 29 H 0.085 0.915 30 H 0.263 0.737 31 H 0.161 0.839 32 H 0.150 0.850 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.211 0.789 36 H 0.090 0.910 37 H 0.117 0.883 38 H 0.156 0.844 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.219 -17.204 0.450 17.253 hybrid contribution -0.037 -0.495 -0.228 0.546 sum 1.182 -17.699 0.222 17.740 Atomic orbital electron populations 1.69970 1.07172 1.28133 1.33130 1.25745 0.94769 1.00548 0.92552 0.86274 0.79770 0.80107 0.79854 1.18931 1.20317 1.18938 1.20837 0.94074 0.88415 1.53032 0.90592 1.18730 0.88035 0.81615 0.78959 1.90735 1.12844 1.84623 1.50219 1.45670 1.12211 1.02964 1.68642 1.19613 0.89138 0.86425 0.91765 1.69499 1.03731 1.24565 1.15716 1.19807 0.95818 0.88259 0.95823 1.20871 0.91239 0.99439 0.99091 1.20954 1.00463 0.91836 0.98173 1.20809 0.93746 0.98453 1.01360 1.20524 0.93788 0.95530 0.99150 1.19099 0.87433 0.95054 1.06995 1.67602 1.09221 1.25172 1.12082 1.18711 0.81027 0.91283 1.05721 1.47696 1.04341 1.07966 1.48803 1.81362 0.93649 1.04869 1.24480 1.74328 1.11755 1.12040 1.09902 1.22975 0.97241 0.91021 1.10492 1.22190 0.90825 0.91927 1.00353 1.20406 1.01733 0.87235 0.91248 1.58783 1.49511 1.09605 1.18923 0.91512 0.73651 0.83902 0.85016 0.85211 0.85142 0.78923 0.91044 0.88335 0.84389 0.83825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.98 11.82 55.55 0.66 -21.32 16 2 C 0.09 2.33 5.50 -17.35 -0.10 2.23 16 3 Si 0.92 19.84 29.56 -169.99 -5.02 14.82 16 4 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 6 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.53 -14.86 9.53 -35.69 -0.34 -15.20 16 8 H 0.08 1.98 7.85 -52.49 -0.41 1.56 16 9 C 0.52 15.04 7.70 -13.08 -0.10 14.94 16 10 O -0.51 -16.13 13.27 5.17 0.07 -16.06 16 11 N -0.64 -15.83 5.30 -12.45 -0.07 -15.90 16 12 C 0.38 8.68 7.44 -154.92 -1.15 7.52 16 13 N -0.41 -9.55 7.97 -9.85 -0.08 -9.63 16 14 C 0.13 2.46 6.59 -84.77 -0.56 1.90 16 15 C -0.09 -1.34 9.98 -39.47 -0.39 -1.73 16 16 C -0.09 -1.05 9.95 -39.93 -0.40 -1.45 16 17 C -0.12 -1.22 9.95 -39.92 -0.40 -1.61 16 18 C -0.07 -0.81 9.98 -39.48 -0.39 -1.20 16 19 C 0.04 0.65 6.59 -84.77 -0.56 0.09 16 20 N -0.42 -6.67 7.68 -9.68 -0.07 -6.74 16 21 C 0.28 5.27 7.60 -154.23 -1.17 4.10 16 22 N -0.30 -5.23 3.84 -7.96 -0.03 -5.26 16 23 N -0.07 -1.23 10.30 60.35 0.62 -0.61 16 24 N -0.21 -3.50 12.33 30.09 0.37 -3.13 16 25 C -0.06 -0.79 11.78 -18.04 -0.21 -1.00 16 26 C 0.08 1.09 6.49 -81.75 -0.53 0.56 16 27 C 0.13 1.26 6.52 -4.98 -0.03 1.23 16 28 N -0.84 -8.08 9.61 -11.41 -0.11 -8.19 16 29 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 30 H 0.42 9.55 4.95 -40.87 -0.20 9.35 16 31 H 0.14 2.29 8.06 -52.49 -0.42 1.86 16 32 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.19 1.71 8.06 -52.49 -0.42 1.28 16 36 H 0.07 0.76 6.37 -51.93 -0.33 0.43 16 37 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.34 3.99 8.98 -39.29 -0.35 3.64 16 39 H 0.35 2.42 9.08 -39.29 -0.36 2.07 16 LS Contribution 342.56 15.07 5.16 5.16 Total: -1.00 -34.98 342.56 -8.17 -43.15 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -3.33 Total: 13.32 kcal Atomic # 6 Polarization: 16.72 SS G_CDS: -6.34 Total: 10.38 kcal Atomic # 7 Polarization: -72.06 SS G_CDS: 1.29 Total: -70.77 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: 0.07 Total: -16.06 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.98 -8.17 -43.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169308467.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.947 kcal (2) G-P(sol) polarization free energy of solvation -34.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 178.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds