Wall clock time and date at job start Tue Mar 31 2020 22:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30634 * 1 3 3 Si 1.86804 * 119.99938 * 2 1 4 4 H 1.48490 * 109.47271 * 240.00082 * 3 2 1 5 5 H 1.48500 * 109.47042 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47039 * 119.99737 * 3 2 1 7 7 C 1.40133 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99889 * 179.97438 * 7 2 1 9 9 C 1.46169 * 119.99580 * 0.02562 * 7 2 1 10 10 O 1.21721 * 120.00441 * 0.02562 * 9 7 2 11 11 N 1.34781 * 119.99457 * 179.97438 * 9 7 2 12 12 C 1.38748 * 119.99638 * 179.97438 * 11 9 7 13 13 N 1.31840 * 119.78652 * 5.58551 * 12 11 9 14 14 C 1.33885 * 119.75053 * 179.97438 * 13 12 11 15 15 C 1.40544 * 120.89976 * 179.97438 * 14 13 12 16 16 C 1.36136 * 119.74280 * 180.02562 * 15 14 13 17 17 C 1.39330 * 120.93023 * 0.02562 * 16 15 14 18 18 C 1.36160 * 120.94290 * 359.97438 * 17 16 15 19 19 C 1.40493 * 119.75579 * 359.97438 * 18 17 16 20 20 N 1.33933 * 120.90928 * 180.22804 * 19 18 17 21 21 C 1.31594 * 119.80526 * 180.27401 * 20 19 18 22 22 N 1.39663 * 119.77170 * 179.77344 * 21 20 19 23 23 N 1.40319 * 126.86730 * 174.19711 * 22 21 20 24 24 N 1.28765 * 108.01006 * 179.97438 * 23 22 21 25 25 C 1.33392 * 109.93239 * 359.75028 * 24 23 22 26 26 C 1.34942 * 109.01757 * 0.40949 * 25 24 23 27 27 C 1.50697 * 126.61228 * 179.86823 * 26 25 24 28 28 N 1.46904 * 109.47283 * 94.68529 * 27 26 25 29 29 H 0.96998 * 119.99885 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00326 * 0.02562 * 11 9 7 31 31 H 1.08001 * 120.12664 * 0.02562 * 15 14 13 32 32 H 1.07996 * 119.53209 * 180.02562 * 16 15 14 33 33 H 1.08001 * 119.52878 * 180.02562 * 17 16 15 34 34 H 1.07994 * 120.12313 * 180.02562 * 18 17 16 35 35 H 1.08001 * 125.48921 * 180.29517 * 25 24 23 36 36 H 1.09002 * 109.47074 * 214.68782 * 27 26 25 37 37 H 1.09002 * 109.46877 * 334.68320 * 27 26 25 38 38 H 1.00896 * 110.99532 * 56.04538 * 28 27 26 39 39 H 1.00902 * 110.99762 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0940 1.6965 -1.2124 5 1 1.2753 2.7465 0.0006 6 1 3.0941 1.6965 1.2126 7 6 2.0071 -1.2136 0.0005 8 1 3.0871 -1.2135 0.0001 9 6 1.2762 -2.4794 0.0005 10 8 0.0590 -2.4795 -0.0004 11 7 1.9502 -3.6466 0.0005 12 6 1.2564 -4.8482 0.0011 13 7 -0.0573 -4.8460 -0.1098 14 6 -0.7259 -6.0060 -0.1097 15 6 -2.1263 -6.0318 -0.2260 16 6 -2.7824 -7.2246 -0.2227 17 6 -2.0852 -8.4251 -0.1049 18 6 -0.7285 -8.4385 0.0096 19 6 -0.0167 -7.2272 0.0090 20 7 1.3183 -7.2136 0.1158 21 6 1.9626 -6.0662 0.1183 22 7 3.3543 -6.0526 0.2345 23 7 4.1961 -4.9338 0.1408 24 7 5.4092 -5.3337 0.3034 25 6 5.4303 -6.6520 0.5056 26 6 4.1668 -7.1238 0.4621 27 6 3.7361 -8.5572 0.6379 28 7 3.3654 -8.7887 2.0404 29 1 -0.4850 0.8400 0.0004 30 1 2.9202 -3.6466 0.0009 31 1 -2.6798 -5.1089 -0.3175 32 1 -3.8585 -7.2405 -0.3126 33 1 -2.6285 -9.3585 -0.1053 34 1 -0.2014 -9.3767 0.0997 35 1 6.3161 -7.2463 0.6749 36 1 2.8781 -8.7599 -0.0030 37 1 4.5578 -9.2194 0.3651 38 1 2.6494 -8.1425 2.3364 39 1 3.0731 -9.7437 2.1841 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169308467.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:20 Heat of formation + Delta-G solvation = 142.750444 kcal Electronic energy + Delta-G solvation = -28979.718706 eV Core-core repulsion = 24925.060372 eV Total energy + Delta-G solvation = -4054.658334 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.68136 -42.46212 -40.03258 -38.53635 -36.78808 -35.80465 -35.55113 -34.72875 -34.10163 -31.67949 -31.29099 -30.78596 -28.66963 -27.12023 -26.03206 -25.51413 -23.82796 -23.04241 -22.43597 -22.18363 -20.28554 -19.82414 -18.91287 -18.53994 -17.75639 -17.53076 -17.32520 -16.91595 -16.58875 -16.37010 -15.98850 -15.67564 -15.43300 -15.30966 -14.98933 -14.96503 -14.83534 -14.55319 -13.75039 -13.57947 -13.36971 -13.15636 -13.03343 -12.94882 -12.78680 -12.72270 -12.60356 -12.58365 -12.37097 -12.08694 -11.90930 -11.18028 -10.92874 -10.73487 -10.48699 -9.75751 -9.64207 -9.57865 -9.05791 -8.43010 -7.04206 -1.26171 -0.61395 0.15819 0.48795 0.88196 1.34835 1.35378 1.38240 1.50960 1.70857 2.02063 2.27933 2.36910 2.58812 2.77848 2.90839 3.18745 3.36754 3.47823 3.48679 3.67240 3.74642 3.95188 3.99803 4.04604 4.20867 4.35849 4.55542 4.62979 4.77662 4.89425 4.94415 5.09409 5.13974 5.17167 5.31149 5.37582 5.57477 5.64052 5.78579 5.94540 5.95729 6.02611 6.48285 6.51754 6.68400 6.82660 7.20867 8.23263 8.48362 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009740 B = 0.004728 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.976982 B = 5920.729522 C = 8640.884682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.032 3.968 3 Si 1.003 2.997 4 H -0.253 1.253 5 H -0.265 1.265 6 H -0.254 1.254 7 C -0.562 4.562 8 H 0.086 0.914 9 C 0.511 3.489 10 O -0.556 6.556 11 N -0.656 5.656 12 C 0.348 3.652 13 N -0.461 5.461 14 C 0.095 3.905 15 C -0.126 4.126 16 C -0.059 4.059 17 C -0.095 4.095 18 C -0.066 4.066 19 C 0.040 3.960 20 N -0.391 5.391 21 C 0.274 3.726 22 N -0.311 5.311 23 N -0.122 5.122 24 N -0.227 5.227 25 C -0.054 4.054 26 C 0.086 3.914 27 C 0.130 3.870 28 N -0.837 5.837 29 H 0.281 0.719 30 H 0.421 0.579 31 H 0.120 0.880 32 H 0.174 0.826 33 H 0.188 0.812 34 H 0.171 0.829 35 H 0.239 0.761 36 H 0.068 0.932 37 H 0.137 0.863 38 H 0.331 0.669 39 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.524 -23.667 0.772 23.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.185 4.185 3 Si 0.821 3.179 4 H -0.177 1.177 5 H -0.190 1.190 6 H -0.178 1.178 7 C -0.597 4.597 8 H 0.104 0.896 9 C 0.317 3.683 10 O -0.436 6.436 11 N -0.310 5.310 12 C 0.096 3.904 13 N -0.185 5.185 14 C -0.033 4.033 15 C -0.147 4.147 16 C -0.078 4.078 17 C -0.115 4.115 18 C -0.085 4.085 19 C -0.088 4.088 20 N -0.108 5.108 21 C 0.025 3.975 22 N -0.096 5.096 23 N -0.099 5.099 24 N -0.095 5.095 25 C -0.211 4.211 26 C -0.047 4.047 27 C -0.002 4.002 28 N -0.369 5.369 29 H 0.091 0.909 30 H 0.269 0.731 31 H 0.138 0.862 32 H 0.191 0.809 33 H 0.205 0.795 34 H 0.189 0.811 35 H 0.255 0.745 36 H 0.086 0.914 37 H 0.155 0.845 38 H 0.142 0.858 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 1.302 -21.749 0.687 21.799 hybrid contribution -0.300 0.426 -0.296 0.599 sum 1.002 -21.324 0.391 21.351 Atomic orbital electron populations 1.70121 1.09452 1.29724 1.34237 1.27001 0.95666 1.04780 0.91010 0.84994 0.78288 0.74149 0.80474 1.17734 1.18960 1.17792 1.21331 0.94814 0.89381 1.54210 0.89571 1.19026 0.87777 0.83238 0.78261 1.90666 1.14461 1.86074 1.52363 1.45089 1.12192 1.03082 1.70647 1.19712 0.89587 0.87003 0.94131 1.69245 1.04928 1.28172 1.16128 1.20310 0.97129 0.88236 0.97588 1.20946 0.90226 1.00870 1.02617 1.21511 1.02505 0.90470 0.93360 1.21492 0.93158 0.99819 0.97036 1.21042 0.94635 0.94905 0.97922 1.19711 0.87553 0.95736 1.05789 1.67804 1.09089 1.23026 1.10919 1.18420 0.81836 0.90495 1.06761 1.47680 1.03810 1.08840 1.49224 1.81318 0.94542 1.06289 1.27754 1.74298 1.11153 1.14016 1.10025 1.23779 0.98586 0.89984 1.08789 1.23055 0.90522 0.92757 0.98382 1.20621 1.03007 0.85227 0.91380 1.58779 1.49164 1.10488 1.18447 0.90876 0.73093 0.86200 0.80868 0.79491 0.81137 0.74501 0.91386 0.84519 0.85812 0.81813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -49.94 11.82 21.85 0.26 -49.68 16 2 C 0.03 1.85 5.50 85.33 0.47 2.32 16 3 Si 1.00 42.25 29.56 68.60 2.03 44.28 16 4 H -0.25 -10.12 7.11 99.48 0.71 -9.42 16 5 H -0.27 -10.49 7.11 99.48 0.71 -9.79 16 6 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 7 C -0.56 -34.00 9.53 24.79 0.24 -33.76 16 8 H 0.09 4.81 7.85 -2.91 -0.02 4.79 16 9 C 0.51 32.38 7.70 86.30 0.66 33.04 16 10 O -0.56 -38.74 13.27 -4.42 -0.06 -38.79 16 11 N -0.66 -35.66 5.30 -311.52 -1.65 -37.31 16 12 C 0.35 17.16 7.44 133.85 1.00 18.16 16 13 N -0.46 -23.47 7.97 -185.09 -1.48 -24.94 16 14 C 0.09 3.70 6.59 40.25 0.27 3.97 16 15 C -0.13 -4.00 9.98 22.34 0.22 -3.78 16 16 C -0.06 -1.09 9.95 22.04 0.22 -0.87 16 17 C -0.09 -1.28 9.95 22.05 0.22 -1.06 16 18 C -0.07 -1.19 9.98 22.34 0.22 -0.97 16 19 C 0.04 1.22 6.59 40.23 0.27 1.48 16 20 N -0.39 -12.13 7.68 -184.54 -1.42 -13.54 16 21 C 0.27 10.71 7.60 133.61 1.02 11.73 16 22 N -0.31 -11.09 3.84 -179.08 -0.69 -11.78 16 23 N -0.12 -4.88 10.30 37.02 0.38 -4.50 16 24 N -0.23 -7.72 12.33 -58.72 -0.72 -8.44 16 25 C -0.05 -1.33 11.78 83.70 0.99 -0.34 16 26 C 0.09 2.24 6.49 41.10 0.27 2.51 16 27 C 0.13 2.18 6.52 85.56 0.56 2.73 16 28 N -0.84 -13.65 9.61 -190.00 -1.83 -15.48 16 29 H 0.28 15.62 8.29 -92.71 -0.77 14.85 16 30 H 0.42 21.35 4.95 -92.76 -0.46 20.89 16 31 H 0.12 4.23 8.06 -2.91 -0.02 4.21 16 32 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 33 H 0.19 0.67 8.06 -2.91 -0.02 0.64 16 34 H 0.17 1.85 8.06 -2.91 -0.02 1.82 16 35 H 0.24 3.34 8.06 -2.91 -0.02 3.32 16 36 H 0.07 1.22 6.37 -2.39 -0.02 1.20 16 37 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.33 7.08 8.98 -89.70 -0.81 6.27 16 39 H 0.37 3.69 9.08 -89.69 -0.81 2.88 16 Total: -1.00 -90.27 342.56 0.53 -89.73 By element: Atomic # 1 Polarization: 36.21 SS G_CDS: -0.90 Total: 35.31 kcal Atomic # 6 Polarization: 28.56 SS G_CDS: 6.61 Total: 35.16 kcal Atomic # 7 Polarization: -158.54 SS G_CDS: -7.14 Total: -165.69 kcal Atomic # 8 Polarization: -38.74 SS G_CDS: -0.06 Total: -38.79 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -90.27 0.53 -89.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169308467.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 232.485 kcal (2) G-P(sol) polarization free energy of solvation -90.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds