Wall clock time and date at job start Tue Mar 31 2020 23:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.99592 * 2 1 4 4 C 1.54321 * 109.88008 * 121.09379 * 2 1 3 5 5 H 1.09007 * 110.72222 * 215.76732 * 4 2 1 6 6 N 1.46902 * 110.72325 * 338.86051 * 4 2 1 7 7 C 1.46896 * 111.00251 * 198.18381 * 6 4 2 8 8 C 1.50702 * 109.47120 * 180.02562 * 7 6 4 9 9 O 1.21288 * 120.00183 * 0.02562 * 8 7 6 10 10 N 1.34784 * 119.99924 * 179.97438 * 8 7 6 11 11 C 1.37095 * 119.99867 * 179.97438 * 10 8 7 12 12 H 1.07998 * 120.00062 * 359.97438 * 11 10 8 13 13 C 1.38948 * 119.99915 * 179.97438 * 11 10 8 14 14 N 1.31415 * 119.99687 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 119.99987 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47312 * 179.97438 * 15 13 11 17 17 H 1.48499 * 109.47392 * 300.00381 * 15 13 11 18 18 H 1.48499 * 109.47194 * 60.00481 * 15 13 11 19 19 C 1.55161 * 102.94359 * 97.22634 * 4 2 1 20 20 C 1.54909 * 101.57891 * 35.50015 * 19 4 2 21 21 N 1.47019 * 109.88478 * 238.90219 * 2 1 3 22 22 C 1.34772 * 125.64752 * 59.55610 * 21 2 1 23 23 O 1.21622 * 120.00089 * 0.02562 * 22 21 2 24 24 C 1.47178 * 120.00041 * 180.02562 * 22 21 2 25 25 C 1.38242 * 128.47263 * 179.70436 * 24 22 21 26 26 N 1.31246 * 111.88255 * 179.80913 * 25 24 22 27 27 N 1.27330 * 120.04224 * 0.53952 * 26 25 24 28 28 S 1.56643 * 109.73746 * 359.68528 * 27 26 25 29 29 H 1.08993 * 109.47296 * 305.17981 * 1 2 3 30 30 H 1.09000 * 109.47070 * 65.18009 * 1 2 3 31 31 H 1.09002 * 109.46803 * 185.17982 * 1 2 3 32 32 H 1.00899 * 110.99930 * 322.14364 * 6 4 2 33 33 H 1.08997 * 109.47470 * 59.99908 * 7 6 4 34 34 H 1.09005 * 109.47212 * 300.00181 * 7 6 4 35 35 H 0.96996 * 119.99980 * 0.02562 * 10 8 7 36 36 H 0.97006 * 119.99562 * 179.97438 * 14 13 11 37 37 H 1.09003 * 111.00336 * 153.57791 * 19 4 2 38 38 H 1.09001 * 110.99981 * 277.42514 * 19 4 2 39 39 H 1.08996 * 110.36213 * 204.15298 * 20 19 4 40 40 H 1.09001 * 110.45962 * 81.88177 * 20 19 4 41 41 H 1.07994 * 124.06211 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7495 1.2427 5 1 2.9639 -0.2812 1.6202 6 7 1.0264 -0.8027 2.2904 7 6 1.6218 -1.1115 3.5973 8 6 0.5388 -1.1582 4.6443 9 8 -0.6155 -0.9547 4.3323 10 7 0.8528 -1.4271 5.9271 11 6 -0.1324 -1.4690 6.8796 12 1 -1.1599 -1.2862 6.6021 13 6 0.1912 -1.7467 8.2020 14 7 1.4417 -1.9687 8.5398 15 14 -1.1509 -1.8032 9.5000 16 1 -0.5494 -2.1174 10.8208 17 1 -1.8312 -0.4848 9.5663 18 1 -2.1394 -2.8528 9.1446 19 6 2.3519 -2.1695 0.6925 20 6 2.8569 -1.8498 -0.7367 21 7 2.0301 -0.7141 -1.1838 22 6 1.7754 -0.3846 -2.4656 23 8 1.0773 0.5786 -2.7187 24 6 2.3421 -1.1903 -3.5591 25 6 2.1920 -1.0168 -4.9224 26 7 2.8463 -1.9261 -5.6062 27 7 3.5053 -2.8297 -4.9976 28 16 3.3780 -2.6254 -3.4497 29 1 -0.3633 0.5920 0.8399 30 1 -0.3633 0.4314 -0.9327 31 1 -0.3633 -1.0235 0.0928 32 1 0.5020 0.0586 2.3263 33 1 2.3465 -0.3402 3.8579 34 1 2.1221 -2.0788 3.5493 35 1 1.7758 -1.5902 6.1766 36 1 1.6677 -2.1622 9.4631 37 1 3.1270 -2.6618 1.2798 38 1 1.4452 -2.7736 0.6605 39 1 2.7088 -2.7080 -1.3921 40 1 3.9094 -1.5674 -0.7146 41 1 1.6088 -0.2263 -5.3709 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178188688.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:03 Heat of formation + Delta-G solvation = 23.419309 kcal Electronic energy + Delta-G solvation = -26401.657625 eV Core-core repulsion = 22444.975905 eV Total energy + Delta-G solvation = -3956.681721 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.25520 -40.63840 -38.58781 -37.85762 -35.00223 -33.89114 -32.73073 -31.46741 -31.30847 -30.79036 -27.94053 -26.75567 -25.52221 -24.25630 -23.78749 -22.64544 -20.32752 -20.01742 -19.38117 -19.22966 -17.98292 -17.62985 -16.69807 -16.51061 -16.23621 -15.92868 -15.49857 -15.23026 -14.97100 -14.55017 -14.22628 -14.00616 -13.84414 -13.58231 -13.34640 -13.10785 -12.65268 -12.58667 -12.41804 -12.32722 -12.08018 -11.79526 -11.62262 -11.54447 -11.18362 -11.02919 -10.84966 -10.54635 -10.51564 -10.47928 -10.36285 -10.25888 -10.24263 -9.54917 -9.15519 -8.55962 -8.22133 -8.01713 -6.46630 -3.87569 -0.71031 0.34513 1.04057 1.54898 2.29961 2.54809 3.16778 3.23065 3.27239 3.54683 3.83962 3.85423 3.96683 4.16913 4.22454 4.25444 4.33421 4.72774 4.80975 4.96297 4.98979 5.11144 5.13986 5.20919 5.28320 5.37482 5.42363 5.63157 5.70771 5.86710 5.89275 5.96806 6.06250 6.19493 6.37400 6.90322 7.05545 7.21283 7.47300 7.50545 7.55150 8.00646 8.55457 9.12776 9.48477 9.99519 10.70853 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.032293 B = 0.001991 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.850834 B =14060.708517 C =14590.846504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.140 3.860 3 H 0.081 0.919 4 C 0.077 3.923 5 H 0.062 0.938 6 N -0.654 5.654 7 C 0.049 3.951 8 C 0.439 3.561 9 O -0.583 6.583 10 N -0.562 5.562 11 C -0.300 4.300 12 H 0.103 0.897 13 C 0.023 3.977 14 N -0.901 5.901 15 Si 0.931 3.069 16 H -0.284 1.284 17 H -0.274 1.274 18 H -0.273 1.273 19 C -0.119 4.119 20 C 0.086 3.914 21 N -0.602 5.602 22 C 0.616 3.384 23 O -0.513 6.513 24 C -0.284 4.284 25 C 0.073 3.927 26 N -0.252 5.252 27 N -0.272 5.272 28 S 0.432 5.568 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.355 0.645 33 H 0.045 0.955 34 H 0.087 0.913 35 H 0.392 0.608 36 H 0.272 0.728 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.804 -0.079 -20.438 22.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.037 3.963 3 H 0.099 0.901 4 C -0.035 4.035 5 H 0.080 0.920 6 N -0.289 5.289 7 C -0.083 4.083 8 C 0.225 3.775 9 O -0.467 6.467 10 N -0.199 5.199 11 C -0.430 4.430 12 H 0.121 0.879 13 C -0.179 4.179 14 N -0.543 5.543 15 Si 0.758 3.242 16 H -0.210 1.210 17 H -0.199 1.199 18 H -0.199 1.199 19 C -0.157 4.157 20 C -0.039 4.039 21 N -0.337 5.337 22 C 0.402 3.598 23 O -0.389 6.389 24 C -0.425 4.425 25 C -0.094 4.094 26 N -0.116 5.116 27 N -0.252 5.252 28 S 0.568 5.432 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.178 0.822 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.225 0.775 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 8.672 -1.653 -21.197 22.962 hybrid contribution -0.337 1.772 1.084 2.104 sum 8.335 0.118 -20.112 21.771 Atomic orbital electron populations 1.22017 0.92964 1.03877 1.02700 1.21708 0.96359 0.95366 0.82826 0.90101 1.22573 0.94296 0.95425 0.91168 0.91985 1.60308 1.23203 1.42253 1.03139 1.21731 0.96040 1.01498 0.89046 1.19757 0.89616 0.84773 0.83378 1.90533 1.20586 1.54865 1.80708 1.41852 1.10588 1.61565 1.05882 1.19649 0.90998 1.45260 0.87072 0.87950 1.25266 0.97227 0.97128 0.98289 1.69603 1.16998 1.48031 1.19630 0.85913 0.80215 0.79007 0.79067 1.20978 1.19898 1.19865 1.22869 1.02996 0.97466 0.92418 1.22707 0.95622 0.88408 0.97181 1.48322 1.50207 1.30494 1.04634 1.16020 0.80438 0.83456 0.79936 1.90862 1.37828 1.27524 1.82693 1.28010 1.10193 1.05255 0.99028 1.24493 0.97918 0.98552 0.88432 1.70805 1.07782 1.01042 1.31956 1.78746 1.19563 1.20629 1.06245 1.82904 1.32988 1.16098 1.11192 0.90781 0.91536 0.91069 0.82227 0.93664 0.89466 0.77464 0.91789 0.89198 0.88696 0.90775 0.89927 0.76765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 8.31 37.16 0.31 -1.52 16 2 C 0.14 1.40 3.41 -66.95 -0.23 1.18 16 3 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 4 C 0.08 0.75 3.10 -65.88 -0.20 0.54 16 5 H 0.06 0.54 7.93 -51.92 -0.41 0.13 16 6 N -0.65 -8.86 5.14 -106.05 -0.55 -9.40 16 7 C 0.05 0.76 6.02 -4.98 -0.03 0.73 16 8 C 0.44 9.66 7.82 -10.98 -0.09 9.58 16 9 O -0.58 -14.98 15.78 5.55 0.09 -14.89 16 10 N -0.56 -13.55 5.29 -10.96 -0.06 -13.60 16 11 C -0.30 -8.10 9.68 -14.94 -0.14 -8.24 16 12 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 14 N -0.90 -23.79 13.05 55.50 0.72 -23.06 16 15 Si 0.93 20.55 29.55 -169.99 -5.02 15.52 16 16 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 17 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 18 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 19 C -0.12 -0.94 6.62 -24.58 -0.16 -1.11 16 20 C 0.09 0.56 5.76 -2.53 -0.01 0.55 16 21 N -0.60 -5.54 3.08 -164.37 -0.51 -6.05 16 22 C 0.62 6.48 7.61 -12.63 -0.10 6.39 16 23 O -0.51 -6.91 15.81 5.26 0.08 -6.82 16 24 C -0.28 -2.47 6.66 -35.95 -0.24 -2.71 16 25 C 0.07 0.63 11.55 -17.80 -0.21 0.42 16 26 N -0.25 -2.56 11.54 30.36 0.35 -2.21 16 27 N -0.27 -2.65 12.51 60.35 0.75 -1.90 16 28 S 0.43 2.96 19.60 -107.50 -2.11 0.85 16 29 H 0.07 0.88 6.61 -51.93 -0.34 0.53 16 30 H 0.07 0.84 6.59 -51.93 -0.34 0.50 16 31 H 0.07 0.90 8.11 -51.93 -0.42 0.48 16 32 H 0.36 5.12 6.38 -39.29 -0.25 4.87 16 33 H 0.05 0.62 8.09 -51.93 -0.42 0.20 16 34 H 0.09 1.20 8.07 -51.93 -0.42 0.78 16 35 H 0.39 8.98 7.90 -40.82 -0.32 8.66 16 36 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 0.40 5.16 -33.80 -0.17 0.23 16 40 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.22 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 355.63 15.07 5.36 5.36 Total: -1.00 -32.72 355.63 -6.81 -39.52 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -4.73 Total: 10.39 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -1.20 Total: 6.28 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: 0.72 Total: -56.22 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: 0.17 Total: -21.71 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 2.96 SS G_CDS: -2.11 Total: 0.85 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.72 -6.81 -39.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178188688.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.943 kcal (2) G-P(sol) polarization free energy of solvation -32.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds