Wall clock time and date at job start Tue Mar 31 2020 23:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.99592 * 2 1 4 4 C 1.54321 * 109.88008 * 121.09379 * 2 1 3 5 5 H 1.09007 * 110.72222 * 215.76732 * 4 2 1 6 6 N 1.46902 * 110.72325 * 338.86051 * 4 2 1 7 7 C 1.46896 * 111.00251 * 198.18381 * 6 4 2 8 8 C 1.50702 * 109.47120 * 180.02562 * 7 6 4 9 9 O 1.21288 * 120.00183 * 0.02562 * 8 7 6 10 10 N 1.34784 * 119.99924 * 179.97438 * 8 7 6 11 11 C 1.37095 * 119.99867 * 179.97438 * 10 8 7 12 12 H 1.07998 * 120.00062 * 359.97438 * 11 10 8 13 13 C 1.38948 * 119.99915 * 179.97438 * 11 10 8 14 14 N 1.31415 * 119.99687 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 119.99987 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47312 * 179.97438 * 15 13 11 17 17 H 1.48499 * 109.47392 * 300.00381 * 15 13 11 18 18 H 1.48499 * 109.47194 * 60.00481 * 15 13 11 19 19 C 1.55161 * 102.94359 * 97.22634 * 4 2 1 20 20 C 1.54909 * 101.57891 * 35.50015 * 19 4 2 21 21 N 1.47019 * 109.88478 * 238.90219 * 2 1 3 22 22 C 1.34772 * 125.64752 * 59.55610 * 21 2 1 23 23 O 1.21622 * 120.00089 * 0.02562 * 22 21 2 24 24 C 1.47178 * 120.00041 * 180.02562 * 22 21 2 25 25 C 1.38242 * 128.47263 * 179.70436 * 24 22 21 26 26 N 1.31246 * 111.88255 * 179.80913 * 25 24 22 27 27 N 1.27330 * 120.04224 * 0.53952 * 26 25 24 28 28 S 1.56643 * 109.73746 * 359.68528 * 27 26 25 29 29 H 1.08993 * 109.47296 * 305.17981 * 1 2 3 30 30 H 1.09000 * 109.47070 * 65.18009 * 1 2 3 31 31 H 1.09002 * 109.46803 * 185.17982 * 1 2 3 32 32 H 1.00899 * 110.99930 * 322.14364 * 6 4 2 33 33 H 1.08997 * 109.47470 * 59.99908 * 7 6 4 34 34 H 1.09005 * 109.47212 * 300.00181 * 7 6 4 35 35 H 0.96996 * 119.99980 * 0.02562 * 10 8 7 36 36 H 0.97006 * 119.99562 * 179.97438 * 14 13 11 37 37 H 1.09003 * 111.00336 * 153.57791 * 19 4 2 38 38 H 1.09001 * 110.99981 * 277.42514 * 19 4 2 39 39 H 1.08996 * 110.36213 * 204.15298 * 20 19 4 40 40 H 1.09001 * 110.45962 * 81.88177 * 20 19 4 41 41 H 1.07994 * 124.06211 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7495 1.2427 5 1 2.9639 -0.2812 1.6202 6 7 1.0264 -0.8027 2.2904 7 6 1.6218 -1.1115 3.5973 8 6 0.5388 -1.1582 4.6443 9 8 -0.6155 -0.9547 4.3323 10 7 0.8528 -1.4271 5.9271 11 6 -0.1324 -1.4690 6.8796 12 1 -1.1599 -1.2862 6.6021 13 6 0.1912 -1.7467 8.2020 14 7 1.4417 -1.9687 8.5398 15 14 -1.1509 -1.8032 9.5000 16 1 -0.5494 -2.1174 10.8208 17 1 -1.8312 -0.4848 9.5663 18 1 -2.1394 -2.8528 9.1446 19 6 2.3519 -2.1695 0.6925 20 6 2.8569 -1.8498 -0.7367 21 7 2.0301 -0.7141 -1.1838 22 6 1.7754 -0.3846 -2.4656 23 8 1.0773 0.5786 -2.7187 24 6 2.3421 -1.1903 -3.5591 25 6 2.1920 -1.0168 -4.9224 26 7 2.8463 -1.9261 -5.6062 27 7 3.5053 -2.8297 -4.9976 28 16 3.3780 -2.6254 -3.4497 29 1 -0.3633 0.5920 0.8399 30 1 -0.3633 0.4314 -0.9327 31 1 -0.3633 -1.0235 0.0928 32 1 0.5020 0.0586 2.3263 33 1 2.3465 -0.3402 3.8579 34 1 2.1221 -2.0788 3.5493 35 1 1.7758 -1.5902 6.1766 36 1 1.6677 -2.1622 9.4631 37 1 3.1270 -2.6618 1.2798 38 1 1.4452 -2.7736 0.6605 39 1 2.7088 -2.7080 -1.3921 40 1 3.9094 -1.5674 -0.7146 41 1 1.6088 -0.2263 -5.3709 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178188688.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:02 Heat of formation + Delta-G solvation = -2.056569 kcal Electronic energy + Delta-G solvation = -26402.762342 eV Core-core repulsion = 22444.975905 eV Total energy + Delta-G solvation = -3957.786438 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.94738 -41.40345 -40.09770 -38.95356 -36.22510 -35.60841 -33.51298 -33.20375 -32.20474 -31.72896 -28.77037 -28.01778 -26.62289 -25.59020 -24.66400 -23.37051 -21.16602 -20.94971 -20.73088 -19.97594 -19.87302 -18.40888 -17.75047 -17.37255 -17.24652 -16.88333 -16.73516 -16.31761 -16.09653 -15.79847 -15.55577 -15.31180 -14.90167 -14.45079 -14.41702 -14.05030 -13.82937 -13.55443 -13.40301 -13.35806 -13.19196 -13.03858 -12.87004 -12.66956 -12.57458 -12.40338 -12.11828 -11.92372 -11.65728 -11.47030 -11.33140 -11.19608 -11.06365 -10.87046 -10.29430 -9.97713 -9.90034 -9.31231 -8.44040 -5.91850 -1.37568 -0.27202 0.41079 0.86127 1.41355 1.43676 1.53381 1.56338 1.79393 2.10804 2.31185 2.89142 2.93527 3.19671 3.24212 3.51648 3.53386 3.60062 3.65527 4.03429 4.19803 4.25590 4.32876 4.41732 4.51838 4.53213 4.55883 4.61028 4.65652 4.71408 5.01814 5.04006 5.18719 5.26976 5.39897 5.43948 5.92083 6.12785 6.18559 6.38051 6.56578 6.64193 6.77496 7.16568 7.61417 8.17099 8.72879 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.032293 B = 0.001991 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.850834 B =14060.708517 C =14590.846504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.142 3.858 3 H 0.084 0.916 4 C 0.080 3.920 5 H 0.087 0.913 6 N -0.669 5.669 7 C 0.066 3.934 8 C 0.437 3.563 9 O -0.625 6.625 10 N -0.574 5.574 11 C -0.332 4.332 12 H 0.077 0.923 13 C -0.012 4.012 14 N -0.919 5.919 15 Si 0.989 3.011 16 H -0.272 1.272 17 H -0.273 1.273 18 H -0.273 1.273 19 C -0.116 4.116 20 C 0.084 3.916 21 N -0.601 5.601 22 C 0.615 3.385 23 O -0.551 6.551 24 C -0.303 4.303 25 C 0.075 3.925 26 N -0.277 5.277 27 N -0.305 5.305 28 S 0.517 5.483 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.347 0.653 33 H 0.071 0.929 34 H 0.112 0.888 35 H 0.397 0.603 36 H 0.277 0.723 37 H 0.115 0.885 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.115 0.885 41 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.843 -0.893 -20.292 23.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.039 3.961 3 H 0.102 0.898 4 C -0.031 4.031 5 H 0.104 0.896 6 N -0.303 5.303 7 C -0.066 4.066 8 C 0.225 3.775 9 O -0.511 6.511 10 N -0.211 5.211 11 C -0.462 4.462 12 H 0.095 0.905 13 C -0.212 4.212 14 N -0.560 5.560 15 Si 0.813 3.187 16 H -0.196 1.196 17 H -0.199 1.199 18 H -0.199 1.199 19 C -0.155 4.155 20 C -0.040 4.040 21 N -0.334 5.334 22 C 0.402 3.598 23 O -0.430 6.430 24 C -0.444 4.444 25 C -0.093 4.093 26 N -0.140 5.140 27 N -0.285 5.285 28 S 0.653 5.347 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.169 0.831 33 H 0.089 0.911 34 H 0.130 0.870 35 H 0.231 0.769 36 H 0.086 0.914 37 H 0.133 0.867 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.132 0.868 41 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 10.763 -2.502 -21.066 23.789 hybrid contribution -0.972 1.997 1.031 2.449 sum 9.791 -0.505 -20.035 22.305 Atomic orbital electron populations 1.21893 0.94677 1.02592 1.01618 1.21631 0.94944 0.95954 0.83596 0.89766 1.22661 0.93866 0.96905 0.89641 0.89571 1.60298 1.24722 1.42190 1.03123 1.21583 0.93687 1.03741 0.87594 1.20975 0.90660 0.82102 0.83776 1.90507 1.23138 1.55993 1.81458 1.41921 1.10255 1.62530 1.06440 1.19588 0.90808 1.47184 0.88586 0.90482 1.25972 0.99343 0.96379 0.99537 1.69656 1.18034 1.48056 1.20241 0.85043 0.77796 0.78786 0.77060 1.19607 1.19851 1.19871 1.22885 1.03121 0.96090 0.93375 1.22959 0.96730 0.87887 0.96437 1.48357 1.50080 1.30957 1.04024 1.16200 0.79950 0.83146 0.80499 1.90841 1.39595 1.29284 1.83329 1.27887 1.11433 1.06515 0.98557 1.24730 0.97510 0.98466 0.88595 1.70860 1.08718 1.01645 1.32767 1.78508 1.20359 1.21274 1.08361 1.82475 1.30181 1.13384 1.08662 0.91467 0.92905 0.92432 0.83135 0.91092 0.87017 0.76871 0.91370 0.86708 0.90484 0.89632 0.86753 0.75612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 8.31 71.98 0.60 -2.94 16 2 C 0.14 2.64 3.41 45.34 0.15 2.79 16 3 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 4 C 0.08 1.32 3.10 46.10 0.14 1.46 16 5 H 0.09 1.11 7.93 -2.38 -0.02 1.09 16 6 N -0.67 -17.08 5.14 -489.43 -2.52 -19.60 16 7 C 0.07 1.87 6.02 85.56 0.52 2.39 16 8 C 0.44 19.14 7.82 87.66 0.69 19.83 16 9 O -0.62 -32.75 15.78 -3.05 -0.05 -32.80 16 10 N -0.57 -27.73 5.29 -306.98 -1.62 -29.36 16 11 C -0.33 -18.21 9.68 84.04 0.81 -17.40 16 12 H 0.08 4.54 7.16 -2.91 -0.02 4.52 16 13 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 14 N -0.92 -47.93 13.05 21.66 0.28 -47.65 16 15 Si 0.99 41.93 29.55 68.60 2.03 43.96 16 16 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 17 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 18 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 19 C -0.12 -1.44 6.62 31.99 0.21 -1.23 16 20 C 0.08 0.79 5.76 86.86 0.50 1.29 16 21 N -0.60 -9.87 3.08 -792.21 -2.44 -12.31 16 22 C 0.62 12.33 7.61 86.59 0.66 12.99 16 23 O -0.55 -14.93 15.81 -4.10 -0.06 -15.00 16 24 C -0.30 -4.82 6.66 24.62 0.16 -4.66 16 25 C 0.07 1.23 11.55 84.78 0.98 2.21 16 26 N -0.28 -5.40 11.54 -57.87 -0.67 -6.07 16 27 N -0.30 -5.47 12.51 37.02 0.46 -5.01 16 28 S 0.52 5.70 19.60 -56.49 -1.11 4.59 16 29 H 0.07 1.65 6.61 -2.39 -0.02 1.63 16 30 H 0.05 1.38 6.59 -2.39 -0.02 1.37 16 31 H 0.06 1.49 8.11 -2.39 -0.02 1.47 16 32 H 0.35 9.86 6.38 -89.69 -0.57 9.29 16 33 H 0.07 1.69 8.09 -2.39 -0.02 1.67 16 34 H 0.11 2.67 8.07 -2.38 -0.02 2.65 16 35 H 0.40 18.02 7.90 -92.71 -0.73 17.29 16 36 H 0.28 13.60 8.31 -92.70 -0.77 12.83 16 37 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.09 0.60 5.16 -13.92 -0.07 0.53 16 40 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.23 2.88 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -73.04 355.63 -0.06 -73.10 By element: Atomic # 1 Polarization: 29.85 SS G_CDS: -0.26 Total: 29.59 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: 5.89 Total: 16.55 kcal Atomic # 7 Polarization: -113.49 SS G_CDS: -6.50 Total: -119.99 kcal Atomic # 8 Polarization: -47.68 SS G_CDS: -0.11 Total: -47.79 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Atomic # 16 Polarization: 5.70 SS G_CDS: -1.11 Total: 4.59 kcal Total: -73.04 -0.06 -73.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178188688.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.041 kcal (2) G-P(sol) polarization free energy of solvation -73.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds