Wall clock time and date at job start Tue Mar 31 2020 23:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.00292 * 2 1 4 4 C 1.54329 * 109.88272 * 121.09810 * 2 1 3 5 5 H 1.09002 * 110.72032 * 215.58441 * 4 2 1 6 6 N 1.46901 * 110.86959 * 338.78853 * 4 2 1 7 7 C 1.46902 * 110.99746 * 202.45261 * 6 4 2 8 8 C 1.50697 * 109.47091 * 179.97438 * 7 6 4 9 9 O 1.21290 * 120.00022 * 0.02562 * 8 7 6 10 10 N 1.34785 * 119.99704 * 179.97438 * 8 7 6 11 11 C 1.37093 * 119.99596 * 180.02562 * 10 8 7 12 12 H 1.08003 * 120.00108 * 0.02562 * 11 10 8 13 13 C 1.38950 * 120.00041 * 180.02562 * 11 10 8 14 14 N 1.31409 * 120.00029 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00247 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46965 * 60.00309 * 15 13 11 17 17 H 1.48497 * 109.46922 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47121 * 300.00232 * 15 13 11 19 19 C 1.55162 * 102.94140 * 97.22106 * 4 2 1 20 20 C 1.54904 * 101.58121 * 35.50310 * 19 4 2 21 21 N 1.47024 * 109.88108 * 238.90148 * 2 1 3 22 22 C 1.34774 * 125.64350 * 59.48913 * 21 2 1 23 23 O 1.21572 * 120.00435 * 0.02562 * 22 21 2 24 24 C 1.47754 * 120.00036 * 180.02562 * 22 21 2 25 25 C 1.39354 * 124.11781 * 179.72436 * 24 22 21 26 26 N 1.30093 * 112.14374 * 179.82365 * 25 24 22 27 27 S 1.55924 * 108.75357 * 0.42767 * 26 25 24 28 28 N 1.31489 * 124.11164 * 0.02996 * 24 22 21 29 29 H 1.09001 * 109.46858 * 298.90106 * 1 2 3 30 30 H 1.08999 * 109.47027 * 58.90393 * 1 2 3 31 31 H 1.09000 * 109.47467 * 178.90865 * 1 2 3 32 32 H 1.00894 * 111.00335 * 78.50055 * 6 4 2 33 33 H 1.09003 * 109.47241 * 300.00265 * 7 6 4 34 34 H 1.09009 * 109.46890 * 59.99819 * 7 6 4 35 35 H 0.96993 * 119.99883 * 0.02562 * 10 8 7 36 36 H 0.96997 * 120.00672 * 179.97438 * 14 13 11 37 37 H 1.09000 * 110.99946 * 153.57687 * 19 4 2 38 38 H 1.09000 * 111.00168 * 277.42785 * 19 4 2 39 39 H 1.08998 * 110.36955 * 81.82737 * 20 19 4 40 40 H 1.09001 * 110.36825 * 204.15266 * 20 19 4 41 41 H 1.07993 * 123.92649 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0549 -0.7496 1.2427 5 1 2.9658 -0.2833 1.6182 6 7 1.0295 -0.8033 2.2933 7 6 1.6390 -1.0123 3.6135 8 6 0.5589 -1.0612 4.6633 9 8 -0.6041 -0.9349 4.3431 10 7 0.8853 -1.2464 5.9578 11 6 -0.0973 -1.2914 6.9128 12 1 -1.1329 -1.1789 6.6277 13 6 0.2392 -1.4818 8.2474 14 7 1.4993 -1.6181 8.5944 15 14 -1.0997 -1.5438 9.5486 16 1 -2.0289 -2.6630 9.2497 17 1 -0.4836 -1.7543 10.8832 18 1 -1.8511 -0.2629 9.5472 19 6 2.3518 -2.1696 0.6923 20 6 2.8567 -1.8499 -0.7368 21 7 2.0300 -0.7141 -1.1839 22 6 1.7742 -0.3853 -2.4656 23 8 1.0753 0.5768 -2.7186 24 6 2.3431 -1.1941 -3.5635 25 6 2.1302 -0.9355 -4.9162 26 7 2.7435 -1.7905 -5.6813 27 16 3.4976 -2.8171 -4.7820 28 7 3.1072 -2.2488 -3.3830 29 1 -0.3633 0.4967 0.8997 30 1 -0.3633 0.5308 -0.8800 31 1 -0.3634 -1.0275 -0.0196 32 1 0.3447 -1.5170 2.0941 33 1 2.1900 -1.9528 3.6145 34 1 2.3214 -0.1911 3.8327 35 1 1.8154 -1.3478 6.2137 36 1 1.7343 -1.7507 9.5260 37 1 3.1270 -2.6619 1.2795 38 1 1.4451 -2.7737 0.6603 39 1 3.9091 -1.5668 -0.7129 40 1 2.7087 -2.7081 -1.3923 41 1 1.5290 -0.1184 -5.2863 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178210973.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:14 Heat of formation + Delta-G solvation = -15.108533 kcal Electronic energy + Delta-G solvation = -26482.674258 eV Core-core repulsion = 22524.321845 eV Total energy + Delta-G solvation = -3958.352413 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.29751 -40.93812 -40.04565 -38.84777 -36.21832 -35.63360 -34.63777 -33.24305 -32.19775 -31.66703 -28.69440 -27.98573 -26.50177 -25.59166 -24.57498 -23.24550 -21.44662 -21.10739 -20.44097 -20.13939 -19.90753 -18.54241 -17.68615 -17.33378 -17.08561 -16.92528 -16.56283 -16.29404 -16.14200 -15.83590 -15.48612 -15.17481 -14.80926 -14.42283 -14.12912 -14.04298 -13.68605 -13.50179 -13.41301 -13.25030 -13.11346 -12.96842 -12.70934 -12.63086 -12.41075 -12.39501 -12.27545 -12.11873 -12.03048 -11.81387 -11.53158 -11.47452 -11.12515 -10.31297 -10.26584 -9.98707 -9.73917 -9.25986 -8.44559 -5.92678 -0.66433 0.33995 0.43892 0.62624 1.40942 1.43003 1.53361 1.75675 1.96678 2.09377 2.30805 2.91695 3.22198 3.23613 3.44152 3.52103 3.63470 3.80514 4.02187 4.07382 4.16974 4.31884 4.36540 4.46840 4.46982 4.55186 4.64501 4.67302 4.73878 4.87990 5.00191 5.08760 5.10019 5.26141 5.41289 5.43057 5.44479 5.91221 6.12252 6.33330 6.37312 6.63224 6.88473 7.15528 7.60055 8.15701 8.72434 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.033975 B = 0.001929 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.935614 B =14512.109238 C =14991.572484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.146 3.854 3 H 0.078 0.922 4 C 0.087 3.913 5 H 0.113 0.887 6 N -0.667 5.667 7 C 0.067 3.933 8 C 0.437 3.563 9 O -0.624 6.624 10 N -0.574 5.574 11 C -0.333 4.333 12 H 0.078 0.922 13 C -0.013 4.013 14 N -0.919 5.919 15 Si 0.990 3.010 16 H -0.272 1.272 17 H -0.271 1.271 18 H -0.274 1.274 19 C -0.160 4.160 20 C 0.109 3.891 21 N -0.594 5.594 22 C 0.612 3.388 23 O -0.555 6.555 24 C -0.001 4.001 25 C 0.088 3.912 26 N -0.600 5.600 27 S 0.791 5.209 28 N -0.553 5.553 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.348 0.652 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.397 0.603 36 H 0.277 0.723 37 H 0.107 0.893 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.277 -4.658 -25.101 27.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.043 3.957 3 H 0.096 0.904 4 C -0.024 4.024 5 H 0.131 0.869 6 N -0.299 5.299 7 C -0.065 4.065 8 C 0.225 3.775 9 O -0.511 6.511 10 N -0.211 5.211 11 C -0.462 4.462 12 H 0.096 0.904 13 C -0.213 4.213 14 N -0.560 5.560 15 Si 0.814 3.186 16 H -0.197 1.197 17 H -0.195 1.195 18 H -0.199 1.199 19 C -0.200 4.200 20 C -0.014 4.014 21 N -0.327 5.327 22 C 0.396 3.604 23 O -0.433 6.433 24 C -0.174 4.174 25 C -0.103 4.103 26 N -0.442 5.442 27 S 0.832 5.168 28 N -0.405 5.405 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.168 0.832 33 H 0.092 0.908 34 H 0.126 0.874 35 H 0.231 0.769 36 H 0.087 0.913 37 H 0.126 0.874 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.118 0.882 41 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 11.356 -5.025 -25.796 28.629 hybrid contribution -1.166 0.588 1.301 1.843 sum 10.190 -4.437 -24.494 26.898 Atomic orbital electron populations 1.21811 0.94726 1.01528 1.02049 1.21515 0.94947 0.95847 0.83438 0.90406 1.22629 0.94564 0.95381 0.89799 0.86886 1.59975 1.14774 1.55213 0.99930 1.21560 0.94302 1.02905 0.87723 1.20947 0.90632 0.81983 0.83939 1.90504 1.22447 1.56343 1.81760 1.41918 1.09711 1.63941 1.05535 1.19601 0.90251 1.48660 0.87714 0.90447 1.25996 0.99343 0.96400 0.99532 1.69653 1.17415 1.49380 1.19584 0.85026 0.77730 0.78836 0.76978 1.19735 1.19546 1.19911 1.23588 1.03037 0.97310 0.96062 1.22590 0.94822 0.88963 0.94988 1.48399 1.49434 1.30760 1.04080 1.16617 0.80004 0.83040 0.80755 1.90818 1.39812 1.29301 1.83354 1.22146 1.02960 0.96483 0.95782 1.23813 0.99225 0.99906 0.87398 1.72171 1.18328 1.12973 1.40703 1.78876 1.33583 1.24484 0.79820 1.72532 1.18170 1.14685 1.35115 0.90909 0.93259 0.93434 0.83213 0.90783 0.87444 0.76890 0.91345 0.87449 0.91032 0.89591 0.88177 0.76281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 8.23 71.98 0.59 -3.31 16 2 C 0.15 3.38 3.48 45.34 0.16 3.54 16 3 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 4 C 0.09 1.78 3.12 46.11 0.14 1.92 16 5 H 0.11 1.96 7.86 -2.39 -0.02 1.94 16 6 N -0.67 -18.85 4.46 -489.41 -2.18 -21.03 16 7 C 0.07 2.05 6.04 85.56 0.52 2.57 16 8 C 0.44 19.89 7.82 87.65 0.69 20.58 16 9 O -0.62 -33.68 15.78 -3.06 -0.05 -33.73 16 10 N -0.57 -28.52 5.29 -306.98 -1.62 -30.14 16 11 C -0.33 -18.61 9.68 84.04 0.81 -17.80 16 12 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 13 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 14 N -0.92 -48.81 13.05 21.66 0.28 -48.53 16 15 Si 0.99 42.60 29.55 68.60 2.03 44.63 16 16 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 17 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 18 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 19 C -0.16 -2.57 6.66 31.99 0.21 -2.35 16 20 C 0.11 1.70 6.08 86.85 0.53 2.23 16 21 N -0.59 -12.56 3.08 -791.53 -2.44 -15.00 16 22 C 0.61 14.39 7.63 86.76 0.66 15.05 16 23 O -0.55 -16.23 15.71 -3.94 -0.06 -16.29 16 24 C 0.00 -0.02 6.71 41.98 0.28 0.26 16 25 C 0.09 1.43 11.22 85.22 0.96 2.38 16 26 N -0.60 -8.89 11.41 -92.45 -1.05 -9.94 16 27 S 0.79 7.65 23.69 -56.49 -1.34 6.31 16 28 N -0.55 -8.11 8.29 -80.59 -0.67 -8.78 16 29 H 0.07 2.24 7.41 -2.39 -0.02 2.22 16 30 H 0.05 1.45 6.76 -2.39 -0.02 1.43 16 31 H 0.05 1.28 7.94 -2.39 -0.02 1.26 16 32 H 0.35 10.66 7.37 -89.70 -0.66 10.00 16 33 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.11 2.92 8.08 -2.38 -0.02 2.90 16 35 H 0.40 18.59 7.90 -92.71 -0.73 17.86 16 36 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 37 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.07 1.30 7.79 -2.39 -0.02 1.28 16 39 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.10 1.52 6.09 -2.39 -0.01 1.51 16 41 H 0.22 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -71.21 357.08 -1.37 -72.59 By element: Atomic # 1 Polarization: 35.36 SS G_CDS: -0.29 Total: 35.07 kcal Atomic # 6 Polarization: 18.84 SS G_CDS: 6.02 Total: 24.86 kcal Atomic # 7 Polarization: -125.75 SS G_CDS: -7.68 Total: -133.43 kcal Atomic # 8 Polarization: -49.91 SS G_CDS: -0.11 Total: -50.02 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: 7.65 SS G_CDS: -1.34 Total: 6.31 kcal Total: -71.21 -1.37 -72.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178210973.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.479 kcal (2) G-P(sol) polarization free energy of solvation -71.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds