Wall clock time and date at job start Tue Mar 31 2020 23:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.87254 * 2 1 4 4 C 1.54319 * 110.00816 * 121.09610 * 2 1 3 5 5 H 1.09002 * 110.72064 * 215.65983 * 4 2 1 6 6 N 1.46895 * 110.72720 * 338.93464 * 4 2 1 7 7 C 1.46897 * 111.00649 * 198.64420 * 6 4 2 8 8 C 1.50697 * 109.47394 * 179.97438 * 7 6 4 9 9 O 1.21293 * 120.00285 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99913 * 179.97438 * 8 7 6 11 11 C 1.37103 * 119.99965 * 179.97438 * 10 8 7 12 12 H 1.08001 * 119.99576 * 0.02562 * 11 10 8 13 13 C 1.38945 * 120.00082 * 180.02562 * 11 10 8 14 14 N 1.31417 * 119.99746 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00180 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47566 * 89.99505 * 15 13 11 17 17 H 1.48504 * 109.47288 * 209.99965 * 15 13 11 18 18 H 1.48502 * 109.47002 * 329.99662 * 15 13 11 19 19 C 1.55275 * 103.00726 * 97.37930 * 4 2 1 20 20 C 1.54903 * 101.52860 * 35.35756 * 19 4 2 21 21 N 1.47017 * 109.88220 * 238.98415 * 2 1 3 22 22 C 1.34775 * 125.64903 * 59.35205 * 21 2 1 23 23 O 1.21601 * 119.99881 * 359.97438 * 22 21 2 24 24 C 1.47446 * 119.99847 * 179.97438 * 22 21 2 25 25 C 1.37984 * 124.15414 * 179.97438 * 24 22 21 26 26 S 1.72101 * 104.03404 * 179.97438 * 25 24 22 27 27 N 1.56404 * 96.15446 * 0.02562 * 26 25 24 28 28 N 1.27425 * 109.87602 * 359.72212 * 27 26 25 29 29 H 1.09001 * 109.46952 * 187.09036 * 1 2 3 30 30 H 1.08999 * 109.47083 * 307.08995 * 1 2 3 31 31 H 1.08994 * 109.47169 * 67.08894 * 1 2 3 32 32 H 1.00904 * 110.99944 * 322.59983 * 6 4 2 33 33 H 1.08997 * 109.46821 * 299.99955 * 7 6 4 34 34 H 1.09002 * 109.47071 * 59.99871 * 7 6 4 35 35 H 0.96994 * 120.00095 * 0.02562 * 10 8 7 36 36 H 0.97001 * 119.99343 * 180.02562 * 14 13 11 37 37 H 1.09000 * 110.95958 * 277.33104 * 19 4 2 38 38 H 1.09001 * 111.09954 * 153.44591 * 19 4 2 39 39 H 1.09000 * 110.37132 * 204.23814 * 20 19 4 40 40 H 1.08998 * 110.36795 * 82.02345 * 20 19 4 41 41 H 1.08002 * 127.98460 * 359.95908 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0581 -0.7489 1.2417 5 1 2.9684 -0.2808 1.6163 6 7 1.0313 -0.8049 2.2907 7 6 1.6303 -1.1023 3.5986 8 6 0.5489 -1.1510 4.6470 9 8 -0.6072 -0.9575 4.3354 10 7 0.8664 -1.4106 5.9309 11 6 -0.1174 -1.4543 6.8849 12 1 -1.1467 -1.2812 6.6075 13 6 0.2099 -1.7214 8.2086 14 7 1.4625 -1.9316 8.5462 15 14 -1.1304 -1.7817 9.5083 16 1 -1.6523 -3.1678 9.6174 17 1 -0.5703 -1.3592 10.8171 18 1 -2.2345 -0.8661 9.1236 19 6 2.3602 -2.1690 0.6910 20 6 2.8599 -1.8465 -0.7393 21 7 2.0300 -0.7124 -1.1849 22 6 1.7722 -0.3834 -2.4661 23 8 1.0702 0.5772 -2.7177 24 6 2.3412 -1.1881 -3.5628 25 6 2.1331 -0.9295 -4.9021 26 16 3.0203 -2.1643 -5.7083 27 7 3.5483 -2.8643 -4.4132 28 7 3.1216 -2.2478 -3.3828 29 1 -0.3633 -1.0198 0.1269 30 1 -0.3633 0.6197 0.8198 31 1 -0.3633 0.4000 -0.9465 32 1 0.5000 0.0524 2.3228 33 1 2.1381 -2.0657 3.5549 34 1 2.3491 -0.3239 3.8544 35 1 1.7908 -1.5657 6.1801 36 1 1.6908 -2.1184 9.4702 37 1 1.4556 -2.7762 0.6612 38 1 3.1388 -2.6591 1.2757 39 1 2.7129 -2.7047 -1.3950 40 1 3.9118 -1.5618 -0.7185 41 1 1.5482 -0.1357 -5.3428 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179244655.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:28 Heat of formation + Delta-G solvation = 23.487012 kcal Electronic energy + Delta-G solvation = -26469.290374 eV Core-core repulsion = 22512.611590 eV Total energy + Delta-G solvation = -3956.678785 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.57472 -40.14290 -38.46507 -37.75293 -34.81715 -33.81031 -32.66750 -31.33952 -31.19100 -30.61602 -27.57782 -26.73075 -25.22942 -24.60357 -23.71706 -22.44932 -20.91182 -19.84727 -19.28444 -18.78395 -17.90737 -16.98735 -16.54423 -16.49909 -16.17116 -15.82128 -15.48717 -15.23935 -14.85839 -14.46376 -13.99936 -13.89168 -13.70323 -13.38244 -13.24223 -12.95050 -12.55400 -12.44743 -12.30834 -12.23157 -11.93470 -11.59037 -11.53792 -11.38234 -11.07803 -10.90543 -10.71049 -10.58182 -10.52893 -10.39338 -10.36010 -10.33200 -10.21713 -9.50934 -8.90390 -8.47252 -8.11632 -7.96231 -6.41830 -3.82579 -0.39912 0.45213 1.03834 1.07469 2.57898 2.80063 3.18136 3.26813 3.32622 3.37967 3.90538 4.05593 4.15476 4.26724 4.32616 4.51433 4.55741 4.82732 4.99858 5.09454 5.17083 5.22647 5.28099 5.42305 5.54604 5.59726 5.72297 5.81028 5.90266 5.96887 6.07108 6.12582 6.23584 6.27930 6.47875 7.01013 7.15530 7.19664 7.55322 7.59564 7.74484 8.06210 8.61015 9.17868 9.54155 10.05447 10.75872 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.034795 B = 0.001905 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.518603 B =14696.596006 C =15152.810364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.138 3.862 3 H 0.077 0.923 4 C 0.077 3.923 5 H 0.060 0.940 6 N -0.654 5.654 7 C 0.050 3.950 8 C 0.441 3.559 9 O -0.583 6.583 10 N -0.564 5.564 11 C -0.299 4.299 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.930 3.070 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.270 1.270 19 C -0.124 4.124 20 C 0.097 3.903 21 N -0.591 5.591 22 C 0.617 3.383 23 O -0.525 6.525 24 C -0.016 4.016 25 C -0.237 4.237 26 S 0.461 5.539 27 N -0.291 5.291 28 N -0.207 5.207 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.353 0.647 33 H 0.087 0.913 34 H 0.045 0.955 35 H 0.392 0.608 36 H 0.271 0.729 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.071 0.929 41 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.021 0.687 -27.542 28.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.035 3.965 3 H 0.095 0.905 4 C -0.034 4.034 5 H 0.077 0.923 6 N -0.289 5.289 7 C -0.083 4.083 8 C 0.226 3.774 9 O -0.467 6.467 10 N -0.200 5.200 11 C -0.428 4.428 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.543 5.543 15 Si 0.757 3.243 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.194 1.194 19 C -0.163 4.163 20 C -0.025 4.025 21 N -0.323 5.323 22 C 0.400 3.600 23 O -0.401 6.401 24 C -0.163 4.163 25 C -0.394 4.394 26 S 0.597 5.403 27 N -0.271 5.271 28 N -0.077 5.077 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.176 0.824 33 H 0.105 0.895 34 H 0.063 0.937 35 H 0.225 0.775 36 H 0.081 0.919 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.117 0.883 40 H 0.089 0.911 41 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 7.853 -0.829 -28.312 29.393 hybrid contribution -0.286 1.788 1.793 2.548 sum 7.567 0.959 -26.519 27.594 Atomic orbital electron populations 1.22007 0.93165 1.03836 1.02490 1.21698 0.96191 0.95316 0.83299 0.90453 1.22590 0.93993 0.95900 0.90966 0.92264 1.60304 1.22970 1.42623 1.02966 1.21724 0.95978 1.01511 0.89079 1.19781 0.89631 0.84581 0.83377 1.90529 1.20448 1.54888 1.80805 1.41861 1.10500 1.61890 1.05778 1.19701 0.90942 1.45256 0.86928 0.87915 1.25265 0.97196 0.97251 0.98285 1.69616 1.16808 1.48430 1.19462 0.85853 0.80348 0.78674 0.79387 1.20395 1.20959 1.19432 1.22940 1.02638 0.96907 0.93783 1.22667 0.94345 0.89389 0.96147 1.48270 1.49210 1.30602 1.04207 1.16203 0.80443 0.83193 0.80174 1.90839 1.38318 1.27941 1.82966 1.22646 1.01941 0.97065 0.94694 1.28889 1.06419 1.07529 0.96557 1.81571 1.29121 1.10530 1.19087 1.78705 1.24040 1.25387 0.99005 1.71714 1.09454 1.05595 1.20953 0.91033 0.91016 0.91617 0.82439 0.89470 0.93747 0.77462 0.91886 0.89214 0.89737 0.88329 0.91058 0.77415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 8.30 37.16 0.31 -1.76 16 2 C 0.14 1.66 3.41 -66.96 -0.23 1.43 16 3 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 4 C 0.08 0.91 3.10 -65.82 -0.20 0.71 16 5 H 0.06 0.65 7.92 -51.93 -0.41 0.24 16 6 N -0.65 -9.98 5.13 -106.00 -0.54 -10.52 16 7 C 0.05 0.84 6.02 -4.98 -0.03 0.81 16 8 C 0.44 10.20 7.82 -10.99 -0.09 10.11 16 9 O -0.58 -15.58 15.78 5.55 0.09 -15.49 16 10 N -0.56 -14.12 5.29 -10.96 -0.06 -14.18 16 11 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 12 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 13 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 14 N -0.90 -24.43 13.05 55.50 0.72 -23.70 16 15 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 19 C -0.12 -1.35 6.66 -24.52 -0.16 -1.51 16 20 C 0.10 0.99 6.06 -2.53 -0.02 0.98 16 21 N -0.59 -6.92 3.08 -164.27 -0.51 -7.43 16 22 C 0.62 7.62 7.61 -12.51 -0.10 7.52 16 23 O -0.52 -7.61 15.59 5.28 0.08 -7.53 16 24 C -0.02 -0.17 6.76 -83.78 -0.57 -0.73 16 25 C -0.24 -1.62 11.21 30.64 0.34 -1.28 16 26 S 0.46 2.38 23.38 -107.50 -2.51 -0.13 16 27 N -0.29 -2.64 12.49 60.35 0.75 -1.89 16 28 N -0.21 -2.14 8.52 32.74 0.28 -1.86 16 29 H 0.07 1.03 8.05 -51.93 -0.42 0.61 16 30 H 0.07 0.94 6.72 -51.93 -0.35 0.59 16 31 H 0.06 0.91 6.52 -51.93 -0.34 0.57 16 32 H 0.35 5.63 6.41 -39.29 -0.25 5.38 16 33 H 0.09 1.35 8.08 -51.93 -0.42 0.93 16 34 H 0.04 0.67 8.09 -51.93 -0.42 0.25 16 35 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 36 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.10 1.03 6.09 -51.93 -0.32 0.71 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.21 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 357.19 15.07 5.38 5.38 Total: -1.00 -33.26 357.19 -7.18 -40.44 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -4.87 Total: 12.56 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: -0.98 Total: 8.32 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: 0.65 Total: -59.58 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: 0.17 Total: -23.02 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -2.51 Total: -0.13 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.26 -7.18 -40.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179244655.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.929 kcal (2) G-P(sol) polarization free energy of solvation -33.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds