Wall clock time and date at job start Tue Mar 31 2020 23:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.87254 * 2 1 4 4 C 1.54319 * 110.00816 * 121.09610 * 2 1 3 5 5 H 1.09002 * 110.72064 * 215.65983 * 4 2 1 6 6 N 1.46895 * 110.72720 * 338.93464 * 4 2 1 7 7 C 1.46897 * 111.00649 * 198.64420 * 6 4 2 8 8 C 1.50697 * 109.47394 * 179.97438 * 7 6 4 9 9 O 1.21293 * 120.00285 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99913 * 179.97438 * 8 7 6 11 11 C 1.37103 * 119.99965 * 179.97438 * 10 8 7 12 12 H 1.08001 * 119.99576 * 0.02562 * 11 10 8 13 13 C 1.38945 * 120.00082 * 180.02562 * 11 10 8 14 14 N 1.31417 * 119.99746 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00180 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47566 * 89.99505 * 15 13 11 17 17 H 1.48504 * 109.47288 * 209.99965 * 15 13 11 18 18 H 1.48502 * 109.47002 * 329.99662 * 15 13 11 19 19 C 1.55275 * 103.00726 * 97.37930 * 4 2 1 20 20 C 1.54903 * 101.52860 * 35.35756 * 19 4 2 21 21 N 1.47017 * 109.88220 * 238.98415 * 2 1 3 22 22 C 1.34775 * 125.64903 * 59.35205 * 21 2 1 23 23 O 1.21601 * 119.99881 * 359.97438 * 22 21 2 24 24 C 1.47446 * 119.99847 * 179.97438 * 22 21 2 25 25 C 1.37984 * 124.15414 * 179.97438 * 24 22 21 26 26 S 1.72101 * 104.03404 * 179.97438 * 25 24 22 27 27 N 1.56404 * 96.15446 * 0.02562 * 26 25 24 28 28 N 1.27425 * 109.87602 * 359.72212 * 27 26 25 29 29 H 1.09001 * 109.46952 * 187.09036 * 1 2 3 30 30 H 1.08999 * 109.47083 * 307.08995 * 1 2 3 31 31 H 1.08994 * 109.47169 * 67.08894 * 1 2 3 32 32 H 1.00904 * 110.99944 * 322.59983 * 6 4 2 33 33 H 1.08997 * 109.46821 * 299.99955 * 7 6 4 34 34 H 1.09002 * 109.47071 * 59.99871 * 7 6 4 35 35 H 0.96994 * 120.00095 * 0.02562 * 10 8 7 36 36 H 0.97001 * 119.99343 * 180.02562 * 14 13 11 37 37 H 1.09000 * 110.95958 * 277.33104 * 19 4 2 38 38 H 1.09001 * 111.09954 * 153.44591 * 19 4 2 39 39 H 1.09000 * 110.37132 * 204.23814 * 20 19 4 40 40 H 1.08998 * 110.36795 * 82.02345 * 20 19 4 41 41 H 1.08002 * 127.98460 * 359.95908 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0581 -0.7489 1.2417 5 1 2.9684 -0.2808 1.6163 6 7 1.0313 -0.8049 2.2907 7 6 1.6303 -1.1023 3.5986 8 6 0.5489 -1.1510 4.6470 9 8 -0.6072 -0.9575 4.3354 10 7 0.8664 -1.4106 5.9309 11 6 -0.1174 -1.4543 6.8849 12 1 -1.1467 -1.2812 6.6075 13 6 0.2099 -1.7214 8.2086 14 7 1.4625 -1.9316 8.5462 15 14 -1.1304 -1.7817 9.5083 16 1 -1.6523 -3.1678 9.6174 17 1 -0.5703 -1.3592 10.8171 18 1 -2.2345 -0.8661 9.1236 19 6 2.3602 -2.1690 0.6910 20 6 2.8599 -1.8465 -0.7393 21 7 2.0300 -0.7124 -1.1849 22 6 1.7722 -0.3834 -2.4661 23 8 1.0702 0.5772 -2.7177 24 6 2.3412 -1.1881 -3.5628 25 6 2.1331 -0.9295 -4.9021 26 16 3.0203 -2.1643 -5.7083 27 7 3.5483 -2.8643 -4.4132 28 7 3.1216 -2.2478 -3.3828 29 1 -0.3633 -1.0198 0.1269 30 1 -0.3633 0.6197 0.8198 31 1 -0.3633 0.4000 -0.9465 32 1 0.5000 0.0524 2.3228 33 1 2.1381 -2.0657 3.5549 34 1 2.3491 -0.3239 3.8544 35 1 1.7908 -1.5657 6.1801 36 1 1.6908 -2.1184 9.4702 37 1 1.4556 -2.7762 0.6612 38 1 3.1388 -2.6591 1.2757 39 1 2.7129 -2.7047 -1.3950 40 1 3.9118 -1.5618 -0.7185 41 1 1.5482 -0.1357 -5.3428 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179244655.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:28 Heat of formation + Delta-G solvation = -2.040749 kcal Electronic energy + Delta-G solvation = -26470.397341 eV Core-core repulsion = 22512.611590 eV Total energy + Delta-G solvation = -3957.785752 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.28355 -41.03146 -40.08946 -38.94805 -36.21796 -35.58584 -33.42331 -33.22009 -32.22013 -31.67508 -28.40033 -28.05291 -26.51934 -25.72894 -25.01450 -23.26754 -21.61160 -21.06494 -20.79650 -19.90074 -19.61287 -17.91113 -17.67842 -17.33346 -17.19502 -16.92986 -16.67878 -16.33303 -16.19015 -15.89649 -15.50983 -15.33759 -14.78910 -14.45462 -14.36860 -14.08549 -13.66062 -13.50579 -13.41968 -13.34121 -13.17997 -13.04059 -12.88576 -12.70125 -12.41233 -12.37961 -12.11920 -11.89207 -11.67663 -11.49172 -11.34610 -11.17046 -11.15830 -10.88631 -10.32092 -9.99570 -9.82592 -9.34402 -8.45414 -5.93647 -0.94633 -0.05913 0.29787 0.53225 1.38707 1.42507 1.54889 1.72989 1.95485 2.07905 2.30147 2.67124 2.91603 3.22259 3.33821 3.52248 3.62691 3.64429 3.76307 4.02882 4.25241 4.28674 4.31388 4.33614 4.43382 4.52938 4.60361 4.64437 4.68741 4.90702 5.01086 5.02486 5.22180 5.28311 5.37812 5.42605 5.89833 6.10954 6.24018 6.36546 6.41736 6.62100 6.85966 7.14559 7.58745 8.14223 8.71894 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.034795 B = 0.001905 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.518603 B =14696.596006 C =15152.810364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.139 3.861 3 H 0.082 0.918 4 C 0.081 3.919 5 H 0.081 0.919 6 N -0.667 5.667 7 C 0.065 3.935 8 C 0.438 3.562 9 O -0.623 6.623 10 N -0.574 5.574 11 C -0.332 4.332 12 H 0.078 0.922 13 C -0.014 4.014 14 N -0.920 5.920 15 Si 0.992 3.008 16 H -0.272 1.272 17 H -0.271 1.271 18 H -0.274 1.274 19 C -0.120 4.120 20 C 0.105 3.895 21 N -0.593 5.593 22 C 0.613 3.387 23 O -0.556 6.556 24 C -0.043 4.043 25 C -0.238 4.238 26 S 0.565 5.435 27 N -0.332 5.332 28 N -0.226 5.226 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.348 0.652 33 H 0.108 0.892 34 H 0.071 0.929 35 H 0.397 0.603 36 H 0.277 0.723 37 H 0.071 0.929 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.488 0.345 -28.802 30.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.036 3.964 3 H 0.100 0.900 4 C -0.029 4.029 5 H 0.099 0.901 6 N -0.301 5.301 7 C -0.067 4.067 8 C 0.226 3.774 9 O -0.510 6.510 10 N -0.211 5.211 11 C -0.462 4.462 12 H 0.096 0.904 13 C -0.213 4.213 14 N -0.561 5.561 15 Si 0.816 3.184 16 H -0.197 1.197 17 H -0.196 1.196 18 H -0.199 1.199 19 C -0.158 4.158 20 C -0.017 4.017 21 N -0.325 5.325 22 C 0.398 3.602 23 O -0.434 6.434 24 C -0.191 4.191 25 C -0.395 4.395 26 S 0.700 5.300 27 N -0.313 5.313 28 N -0.096 5.096 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.169 0.831 33 H 0.126 0.874 34 H 0.088 0.912 35 H 0.231 0.769 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.121 0.879 39 H 0.115 0.885 40 H 0.104 0.896 41 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 9.368 -1.197 -29.575 31.046 hybrid contribution -0.745 1.884 1.967 2.824 sum 8.623 0.687 -27.608 28.931 Atomic orbital electron populations 1.21875 0.94400 1.02521 1.01732 1.21642 0.95146 0.95805 0.83835 0.89963 1.22629 0.93673 0.96802 0.89775 0.90140 1.60282 1.24277 1.42652 1.02921 1.21578 0.93845 1.03557 0.87692 1.20894 0.90561 0.82189 0.83769 1.90501 1.22859 1.56089 1.81519 1.41924 1.10210 1.62672 1.06289 1.19645 0.90695 1.47405 0.88427 0.90412 1.26017 0.99418 0.96326 0.99579 1.69671 1.17940 1.48248 1.20202 0.84946 0.77670 0.78690 0.77142 1.19737 1.19559 1.19859 1.22925 1.02446 0.96034 0.94432 1.22677 0.94714 0.88900 0.95434 1.48346 1.49205 1.30833 1.04093 1.16533 0.79975 0.83037 0.80704 1.90808 1.39746 1.29338 1.83514 1.22442 1.03617 0.97932 0.95096 1.29261 1.05973 1.08283 0.95941 1.81200 1.25853 1.07454 1.15496 1.78368 1.25551 1.26841 1.00495 1.71738 1.10023 1.05832 1.21969 0.92644 0.91319 0.92621 0.83097 0.87413 0.91158 0.76911 0.91344 0.91057 0.87857 0.88474 0.89622 0.75620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.99 8.30 71.98 0.60 -3.39 16 2 C 0.14 3.28 3.41 45.34 0.15 3.44 16 3 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 4 C 0.08 1.82 3.10 46.14 0.14 1.97 16 5 H 0.08 1.53 7.92 -2.39 -0.02 1.51 16 6 N -0.67 -19.88 5.13 -489.26 -2.51 -22.39 16 7 C 0.07 2.11 6.02 85.56 0.52 2.62 16 8 C 0.44 20.41 7.82 87.66 0.69 21.10 16 9 O -0.62 -34.19 15.78 -3.07 -0.05 -34.23 16 10 N -0.57 -29.04 5.29 -306.98 -1.62 -30.66 16 11 C -0.33 -18.80 9.68 84.04 0.81 -17.99 16 12 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 13 C -0.01 -0.73 5.50 84.92 0.47 -0.26 16 14 N -0.92 -49.37 13.05 21.66 0.28 -49.09 16 15 Si 0.99 43.02 29.55 68.60 2.03 45.05 16 16 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 17 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 19 C -0.12 -2.43 6.66 32.03 0.21 -2.22 16 20 C 0.11 2.02 6.06 86.85 0.53 2.55 16 21 N -0.59 -13.64 3.08 -791.90 -2.44 -16.08 16 22 C 0.61 15.07 7.61 86.67 0.66 15.73 16 23 O -0.56 -16.29 15.59 -4.03 -0.06 -16.36 16 24 C -0.04 -0.84 6.76 41.36 0.28 -0.56 16 25 C -0.24 -2.83 11.21 67.76 0.76 -2.07 16 26 S 0.56 4.34 23.38 -56.49 -1.32 3.02 16 27 N -0.33 -5.48 12.49 37.02 0.46 -5.02 16 28 N -0.23 -4.46 8.52 -50.34 -0.43 -4.88 16 29 H 0.05 1.66 8.05 -2.39 -0.02 1.64 16 30 H 0.07 1.87 6.72 -2.39 -0.02 1.85 16 31 H 0.05 1.61 6.52 -2.39 -0.02 1.59 16 32 H 0.35 11.09 6.41 -89.69 -0.57 10.51 16 33 H 0.11 3.08 8.08 -2.39 -0.02 3.06 16 34 H 0.07 1.95 8.09 -2.39 -0.02 1.93 16 35 H 0.40 18.97 7.90 -92.71 -0.73 18.24 16 36 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 37 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.10 1.96 6.09 -2.39 -0.01 1.95 16 40 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.23 1.68 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -73.64 357.19 -0.05 -73.69 By element: Atomic # 1 Polarization: 36.26 SS G_CDS: -0.20 Total: 36.06 kcal Atomic # 6 Polarization: 15.09 SS G_CDS: 5.81 Total: 20.90 kcal Atomic # 7 Polarization: -121.87 SS G_CDS: -6.26 Total: -128.13 kcal Atomic # 8 Polarization: -50.48 SS G_CDS: -0.11 Total: -50.59 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 16 Polarization: 4.34 SS G_CDS: -1.32 Total: 3.02 kcal Total: -73.64 -0.05 -73.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179244655.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.647 kcal (2) G-P(sol) polarization free energy of solvation -73.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds