Wall clock time and date at job start Tue Mar 31 2020 22:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46989 * 2 1 4 4 C 1.53002 * 109.46943 * 240.00160 * 2 1 3 5 5 O 1.45196 * 109.47120 * 119.99853 * 2 1 3 6 6 C 1.34644 * 116.99750 * 60.00078 * 5 2 1 7 7 O 1.21507 * 119.99930 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99827 * 179.97438 * 6 5 2 9 9 C 1.46496 * 120.00258 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.47135 * 325.00366 * 9 8 6 11 11 C 1.50702 * 109.46923 * 85.00020 * 9 8 6 12 12 H 1.08003 * 120.00073 * 239.99992 * 11 9 8 13 13 C 1.37877 * 119.99843 * 60.00425 * 11 9 8 14 14 N 1.31518 * 119.99969 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 120.00011 * 180.02562 * 13 11 9 16 16 H 1.48491 * 109.47177 * 59.99759 * 15 13 11 17 17 H 1.48503 * 109.47124 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46867 * 299.99714 * 15 13 11 19 19 C 1.50698 * 109.47526 * 205.00423 * 9 8 6 20 20 O 1.21257 * 119.99893 * 359.97438 * 19 9 8 21 21 N 1.34775 * 120.00039 * 180.02562 * 19 9 8 22 22 C 1.37902 * 119.99874 * 179.97438 * 21 19 9 23 23 C 1.39542 * 134.16868 * 179.97438 * 22 21 19 24 24 N 1.37108 * 134.17411 * 359.97438 * 23 22 21 25 25 C 1.46873 * 91.65620 * 180.02562 * 23 22 21 26 26 O 1.21608 * 135.89157 * 180.02562 * 25 23 22 27 27 C 1.46532 * 134.17127 * 359.64457 * 22 21 19 28 28 O 1.21659 * 135.75916 * 359.95063 * 27 22 21 29 29 H 1.09004 * 109.47306 * 299.99804 * 1 2 3 30 30 H 1.09003 * 109.47378 * 60.00136 * 1 2 3 31 31 H 1.09006 * 109.47255 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47084 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46954 * 299.99569 * 3 2 1 34 34 H 1.08998 * 109.47592 * 60.00181 * 3 2 1 35 35 H 1.09005 * 109.46853 * 299.99576 * 4 2 1 36 36 H 1.08994 * 109.47198 * 59.99893 * 4 2 1 37 37 H 1.08999 * 109.46961 * 179.97438 * 4 2 1 38 38 H 0.96999 * 120.00047 * 0.02562 * 8 6 5 39 39 H 0.97000 * 120.00124 * 179.97438 * 14 13 11 40 40 H 0.96993 * 120.00077 * 359.97438 * 21 19 9 41 41 H 0.96996 * 119.99820 * 359.97438 * 24 23 22 42 42 H 0.96991 * 120.00277 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9508 -2.5094 0.5040 8 7 2.0680 -2.6657 2.4166 9 6 1.6739 -4.0668 2.5832 10 1 0.6645 -4.2088 2.1970 11 6 2.6305 -4.9511 1.8256 12 1 2.2646 -5.5912 1.0364 13 6 3.9730 -4.9430 2.1400 14 7 4.4187 -4.1633 3.1007 15 14 5.1589 -6.0386 1.2004 16 1 5.1258 -5.6825 -0.2408 17 1 6.5339 -5.8458 1.7271 18 1 4.7596 -7.4591 1.3687 19 6 1.7074 -4.4276 4.0460 20 8 2.0292 -3.5966 4.8682 21 7 1.3807 -5.6744 4.4402 22 6 1.4118 -6.0047 5.7787 23 6 1.1402 -7.1681 6.4996 24 7 0.7368 -8.4327 6.1561 25 6 1.4552 -6.5045 7.7714 26 8 1.4727 -6.8272 8.9438 27 6 1.7490 -5.2738 7.0031 28 8 2.1133 -4.1445 7.2718 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6767 1.9564 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1392 37 1 3.1299 -0.7208 -1.2495 38 1 2.6275 -2.2368 3.0828 39 1 5.3630 -4.1578 3.3221 40 1 1.1237 -6.3393 3.7824 41 1 0.5816 -8.6561 5.2250 42 1 0.6065 -9.1039 6.8440 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180777906.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:37 Heat of formation + Delta-G solvation = -125.134352 kcal Electronic energy + Delta-G solvation = -30164.535666 eV Core-core repulsion = 25726.366553 eV Total energy + Delta-G solvation = -4438.169113 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.80355 -39.92157 -38.92353 -37.44556 -36.66813 -36.26205 -34.11687 -33.92670 -33.49300 -32.31161 -31.96868 -28.14721 -27.12740 -27.02951 -24.50637 -23.16247 -22.47113 -21.37108 -20.06561 -19.30077 -18.44259 -17.95631 -17.41099 -17.28485 -16.91819 -15.92166 -15.89001 -15.66282 -15.34257 -15.31722 -14.98484 -14.68181 -14.17304 -13.90192 -13.84773 -13.79607 -13.50289 -13.03461 -13.00630 -12.64869 -12.30632 -12.19849 -11.91165 -11.85792 -11.54063 -11.45395 -11.40592 -11.23020 -11.13181 -10.91479 -10.81469 -10.46024 -10.29444 -10.12166 -9.75833 -9.39613 -9.12690 -9.02732 -8.74815 -7.87197 -7.06530 -6.41731 -4.60098 0.84945 1.24367 2.84312 3.06821 3.15131 3.18410 3.18820 3.38981 3.62486 3.86413 3.89955 3.98581 4.06382 4.13981 4.83391 4.97251 5.07264 5.09850 5.11763 5.24247 5.34326 5.68771 5.79300 5.92828 5.95316 6.00189 6.08897 6.19502 6.23029 6.40486 6.62772 6.73121 6.76935 6.97568 7.20137 7.21253 7.37983 7.47825 7.49616 7.67595 7.84446 7.85978 8.44896 8.70792 8.93269 9.15060 9.49536 10.60453 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012768 B = 0.003626 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.409546 B = 7720.296502 C = 8874.478723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.137 3.863 3 C -0.139 4.139 4 C -0.181 4.181 5 O -0.372 6.372 6 C 0.649 3.351 7 O -0.589 6.589 8 N -0.664 5.664 9 C 0.275 3.725 10 H 0.076 0.924 11 C -0.548 4.548 12 H 0.076 0.924 13 C 0.078 3.922 14 N -0.853 5.853 15 Si 0.902 3.098 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.273 1.273 19 C 0.526 3.474 20 O -0.490 6.490 21 N -0.614 5.614 22 C 0.055 3.945 23 C 0.061 3.939 24 N -0.816 5.816 25 C 0.353 3.647 26 O -0.424 6.424 27 C 0.355 3.645 28 O -0.369 6.369 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.408 0.592 39 H 0.273 0.727 40 H 0.416 0.584 41 H 0.407 0.593 42 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.987 -2.494 -2.102 7.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.099 3.901 3 C -0.196 4.196 4 C -0.238 4.238 5 O -0.288 6.288 6 C 0.401 3.599 7 O -0.481 6.481 8 N -0.321 5.321 9 C 0.170 3.830 10 H 0.094 0.906 11 C -0.586 4.586 12 H 0.094 0.906 13 C -0.131 4.131 14 N -0.486 5.486 15 Si 0.729 3.271 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.199 1.199 19 C 0.315 3.685 20 O -0.360 6.360 21 N -0.256 5.256 22 C -0.061 4.061 23 C -0.057 4.057 24 N -0.359 5.359 25 C 0.229 3.771 26 O -0.299 6.299 27 C 0.225 3.775 28 O -0.238 6.238 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.111 0.889 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.245 0.755 39 H 0.083 0.917 40 H 0.254 0.746 41 H 0.238 0.762 42 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -6.661 -1.375 -1.092 6.889 hybrid contribution 0.940 -1.326 -1.048 1.934 sum -5.722 -2.701 -2.140 6.679 Atomic orbital electron populations 1.22500 0.94658 1.05082 1.01540 1.21825 0.93901 0.91223 0.83143 1.21828 1.02114 0.93305 1.02389 1.22490 1.01424 1.03874 0.96027 1.86312 1.72127 1.25012 1.45311 1.17977 0.79315 0.79578 0.83001 1.90761 1.43228 1.70388 1.43703 1.45017 1.52710 1.11939 1.22452 1.18161 0.97832 0.79560 0.87408 0.90596 1.21171 0.91972 1.25056 1.20408 0.90581 1.25164 0.98670 0.94989 0.94320 1.69895 1.16098 1.35521 1.27102 0.86478 0.79692 0.80512 0.80416 1.19793 1.21072 1.19869 1.21808 0.74031 0.79937 0.92758 1.90740 1.42482 1.48167 1.54588 1.42471 1.65262 1.15005 1.02833 1.22197 1.01671 0.94245 0.87943 1.21800 1.01426 0.86681 0.95756 1.40776 1.75184 1.08292 1.11612 1.24106 0.75491 0.89855 0.87610 1.90672 1.44317 1.77531 1.17347 1.23293 0.77705 0.88773 0.87697 1.90768 1.33836 1.18416 1.80758 0.92611 0.91990 0.89116 0.91721 0.90833 0.91789 0.88895 0.92122 0.92495 0.75550 0.91705 0.74647 0.76217 0.75978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.68 8.37 37.16 0.31 -2.37 16 2 C 0.14 2.20 1.13 -90.62 -0.10 2.09 16 3 C -0.14 -1.75 8.85 37.16 0.33 -1.42 16 4 C -0.18 -2.87 8.37 37.16 0.31 -2.56 16 5 O -0.37 -7.50 9.94 -40.34 -0.40 -7.90 16 6 C 0.65 14.44 8.01 54.06 0.43 14.88 16 7 O -0.59 -13.45 11.54 -19.28 -0.22 -13.68 16 8 N -0.66 -15.33 4.36 -61.01 -0.27 -15.59 16 9 C 0.27 6.08 2.57 -70.24 -0.18 5.90 16 10 H 0.08 1.60 7.58 -51.93 -0.39 1.21 16 11 C -0.55 -12.74 8.66 -34.44 -0.30 -13.04 16 12 H 0.08 1.74 7.81 -52.48 -0.41 1.33 16 13 C 0.08 1.88 5.23 -17.82 -0.09 1.79 16 14 N -0.85 -21.81 11.58 55.43 0.64 -21.17 16 15 Si 0.90 19.21 29.54 -169.99 -5.02 14.19 16 16 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 17 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 19 C 0.53 11.27 5.96 -10.99 -0.07 11.20 16 20 O -0.49 -12.03 13.19 -16.83 -0.22 -12.25 16 21 N -0.61 -10.42 5.26 -10.17 -0.05 -10.47 16 22 C 0.05 0.88 7.93 -84.38 -0.67 0.21 16 23 C 0.06 0.77 8.73 -84.92 -0.74 0.03 16 24 N -0.82 -6.62 9.00 31.97 0.29 -6.33 16 25 C 0.35 5.43 9.15 -35.14 -0.32 5.11 16 26 O -0.42 -7.19 18.05 5.27 0.10 -7.10 16 27 C 0.35 6.56 8.42 -35.61 -0.30 6.26 16 28 O -0.37 -8.29 16.04 -17.18 -0.28 -8.56 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.09 1.57 5.88 -51.93 -0.31 1.27 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.09 1.74 5.88 -51.93 -0.31 1.44 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.41 9.97 7.58 -40.82 -0.31 9.66 16 39 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 40 H 0.42 5.74 8.70 -40.82 -0.36 5.39 16 41 H 0.41 2.50 8.95 -40.82 -0.37 2.13 16 42 H 0.41 2.54 8.95 -40.82 -0.37 2.17 16 LS Contribution 367.83 15.07 5.54 5.54 Total: -1.00 -31.86 367.83 -6.18 -38.04 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: -4.90 Total: 17.20 kcal Atomic # 6 Polarization: 29.46 SS G_CDS: -1.39 Total: 28.07 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 0.61 Total: -53.57 kcal Atomic # 8 Polarization: -48.46 SS G_CDS: -1.03 Total: -49.48 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.19 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.86 -6.18 -38.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180777906.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.094 kcal (2) G-P(sol) polarization free energy of solvation -31.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds