Wall clock time and date at job start Tue Mar 31 2020 22:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46989 * 2 1 4 4 C 1.53002 * 109.46943 * 240.00160 * 2 1 3 5 5 O 1.45196 * 109.47120 * 119.99853 * 2 1 3 6 6 C 1.34644 * 116.99750 * 60.00078 * 5 2 1 7 7 O 1.21507 * 119.99930 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99827 * 179.97438 * 6 5 2 9 9 C 1.46496 * 120.00258 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.47135 * 325.00366 * 9 8 6 11 11 C 1.50702 * 109.46923 * 85.00020 * 9 8 6 12 12 H 1.08003 * 120.00073 * 239.99992 * 11 9 8 13 13 C 1.37877 * 119.99843 * 60.00425 * 11 9 8 14 14 N 1.31518 * 119.99969 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 120.00011 * 180.02562 * 13 11 9 16 16 H 1.48491 * 109.47177 * 59.99759 * 15 13 11 17 17 H 1.48503 * 109.47124 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46867 * 299.99714 * 15 13 11 19 19 C 1.50698 * 109.47526 * 205.00423 * 9 8 6 20 20 O 1.21257 * 119.99893 * 359.97438 * 19 9 8 21 21 N 1.34775 * 120.00039 * 180.02562 * 19 9 8 22 22 C 1.37902 * 119.99874 * 179.97438 * 21 19 9 23 23 C 1.39542 * 134.16868 * 179.97438 * 22 21 19 24 24 N 1.37108 * 134.17411 * 359.97438 * 23 22 21 25 25 C 1.46873 * 91.65620 * 180.02562 * 23 22 21 26 26 O 1.21608 * 135.89157 * 180.02562 * 25 23 22 27 27 C 1.46532 * 134.17127 * 359.64457 * 22 21 19 28 28 O 1.21659 * 135.75916 * 359.95063 * 27 22 21 29 29 H 1.09004 * 109.47306 * 299.99804 * 1 2 3 30 30 H 1.09003 * 109.47378 * 60.00136 * 1 2 3 31 31 H 1.09006 * 109.47255 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47084 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46954 * 299.99569 * 3 2 1 34 34 H 1.08998 * 109.47592 * 60.00181 * 3 2 1 35 35 H 1.09005 * 109.46853 * 299.99576 * 4 2 1 36 36 H 1.08994 * 109.47198 * 59.99893 * 4 2 1 37 37 H 1.08999 * 109.46961 * 179.97438 * 4 2 1 38 38 H 0.96999 * 120.00047 * 0.02562 * 8 6 5 39 39 H 0.97000 * 120.00124 * 179.97438 * 14 13 11 40 40 H 0.96993 * 120.00077 * 359.97438 * 21 19 9 41 41 H 0.96996 * 119.99820 * 359.97438 * 24 23 22 42 42 H 0.96991 * 120.00277 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9508 -2.5094 0.5040 8 7 2.0680 -2.6657 2.4166 9 6 1.6739 -4.0668 2.5832 10 1 0.6645 -4.2088 2.1970 11 6 2.6305 -4.9511 1.8256 12 1 2.2646 -5.5912 1.0364 13 6 3.9730 -4.9430 2.1400 14 7 4.4187 -4.1633 3.1007 15 14 5.1589 -6.0386 1.2004 16 1 5.1258 -5.6825 -0.2408 17 1 6.5339 -5.8458 1.7271 18 1 4.7596 -7.4591 1.3687 19 6 1.7074 -4.4276 4.0460 20 8 2.0292 -3.5966 4.8682 21 7 1.3807 -5.6744 4.4402 22 6 1.4118 -6.0047 5.7787 23 6 1.1402 -7.1681 6.4996 24 7 0.7368 -8.4327 6.1561 25 6 1.4552 -6.5045 7.7714 26 8 1.4727 -6.8272 8.9438 27 6 1.7490 -5.2738 7.0031 28 8 2.1133 -4.1445 7.2718 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6767 1.9564 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1392 37 1 3.1299 -0.7208 -1.2495 38 1 2.6275 -2.2368 3.0828 39 1 5.3630 -4.1578 3.3221 40 1 1.1237 -6.3393 3.7824 41 1 0.5816 -8.6561 5.2250 42 1 0.6065 -9.1039 6.8440 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180777906.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:37 Heat of formation + Delta-G solvation = -150.001724 kcal Electronic energy + Delta-G solvation = -30165.613996 eV Core-core repulsion = 25726.366553 eV Total energy + Delta-G solvation = -4439.247443 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.15782 -41.50295 -40.45156 -38.86370 -38.12685 -37.67868 -35.83521 -35.32101 -34.90976 -33.74179 -33.53350 -29.87319 -28.25916 -28.21109 -26.20633 -24.63267 -23.74715 -22.84279 -21.58918 -20.86043 -19.78773 -19.40278 -18.79448 -18.57550 -18.48962 -17.42080 -17.20979 -17.08084 -16.93360 -16.83846 -16.63245 -16.08866 -15.69767 -15.45007 -15.29386 -15.16273 -14.81554 -14.51170 -14.41744 -14.26404 -13.92638 -13.23554 -13.15303 -13.09665 -12.84674 -12.82531 -12.77359 -12.74700 -12.73015 -12.40014 -12.25344 -12.12203 -11.86276 -11.58018 -11.20813 -11.09559 -10.78061 -10.55910 -10.34358 -9.64004 -8.29312 -8.21358 -6.47030 -0.46283 -0.07003 1.36040 1.43519 1.45496 1.51315 1.81014 1.88477 2.14541 2.35170 2.39175 2.52959 2.69071 2.84745 3.06248 3.65223 3.76634 3.88559 3.91298 3.99059 4.06094 4.41230 4.58255 4.67562 4.69347 4.82934 4.86753 4.92989 4.95858 5.15369 5.39618 5.43252 5.50869 5.60357 5.65148 5.69347 5.76334 5.94439 6.11635 6.43073 6.54570 6.62284 6.69576 6.92031 7.29047 7.43536 7.76049 8.75925 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012768 B = 0.003626 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.409546 B = 7720.296502 C = 8874.478723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.118 3.882 3 C -0.133 4.133 4 C -0.176 4.176 5 O -0.384 6.384 6 C 0.646 3.354 7 O -0.599 6.599 8 N -0.672 5.672 9 C 0.270 3.730 10 H 0.081 0.919 11 C -0.546 4.546 12 H 0.080 0.920 13 C 0.040 3.960 14 N -0.880 5.880 15 Si 0.955 3.045 16 H -0.281 1.281 17 H -0.295 1.295 18 H -0.253 1.253 19 C 0.526 3.474 20 O -0.529 6.529 21 N -0.601 5.601 22 C 0.011 3.989 23 C 0.145 3.855 24 N -0.776 5.776 25 C 0.365 3.635 26 O -0.433 6.433 27 C 0.328 3.672 28 O -0.434 6.434 29 H 0.057 0.943 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.108 0.892 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.096 0.904 37 H 0.049 0.951 38 H 0.398 0.602 39 H 0.265 0.735 40 H 0.431 0.569 41 H 0.427 0.573 42 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.075 -4.606 -3.263 9.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.082 3.918 3 C -0.190 4.190 4 C -0.233 4.233 5 O -0.300 6.300 6 C 0.399 3.601 7 O -0.492 6.492 8 N -0.328 5.328 9 C 0.166 3.834 10 H 0.099 0.901 11 C -0.585 4.585 12 H 0.098 0.902 13 C -0.166 4.166 14 N -0.515 5.515 15 Si 0.781 3.219 16 H -0.206 1.206 17 H -0.221 1.221 18 H -0.177 1.177 19 C 0.315 3.685 20 O -0.403 6.403 21 N -0.246 5.246 22 C -0.104 4.104 23 C 0.022 3.978 24 N -0.319 5.319 25 C 0.242 3.758 26 O -0.308 6.308 27 C 0.204 3.796 28 O -0.308 6.308 29 H 0.077 0.923 30 H 0.114 0.886 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.127 0.873 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.115 0.885 37 H 0.068 0.932 38 H 0.233 0.767 39 H 0.074 0.926 40 H 0.271 0.729 41 H 0.261 0.739 42 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -7.819 -3.645 -2.279 8.923 hybrid contribution 1.136 -0.868 -0.678 1.583 sum -6.683 -4.513 -2.957 8.589 Atomic orbital electron populations 1.22433 0.93686 1.03690 1.03352 1.22409 0.94975 0.92678 0.81772 1.21863 1.01972 0.90866 1.04283 1.22432 1.00916 1.02387 0.97572 1.86320 1.72321 1.23925 1.47429 1.18061 0.79137 0.80289 0.82615 1.90749 1.43625 1.70946 1.43868 1.45083 1.52766 1.12434 1.22519 1.18253 0.97778 0.79171 0.88242 0.90146 1.21345 0.92162 1.24791 1.20158 0.90235 1.25768 1.00018 0.95972 0.94824 1.70052 1.15601 1.37164 1.28650 0.85646 0.77502 0.80240 0.78516 1.20624 1.22099 1.17661 1.21565 0.73902 0.81039 0.92027 1.90734 1.44639 1.49714 1.55210 1.41947 1.65154 1.13887 1.03598 1.21906 1.06087 0.95177 0.87192 1.21265 0.96473 0.86930 0.93127 1.41039 1.70787 1.06357 1.13684 1.23894 0.75048 0.89054 0.87813 1.90682 1.44696 1.77480 1.17989 1.24018 0.77171 0.88894 0.89529 1.90723 1.37499 1.20756 1.81847 0.92348 0.88589 0.92019 0.92022 0.87325 0.91460 0.92160 0.88526 0.93199 0.76678 0.92570 0.72894 0.73942 0.73743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.00 8.37 71.98 0.60 -4.39 16 2 C 0.12 3.71 1.13 -10.79 -0.01 3.70 16 3 C -0.13 -3.08 8.85 71.98 0.64 -2.44 16 4 C -0.18 -5.44 8.37 71.98 0.60 -4.84 16 5 O -0.38 -15.88 9.94 -55.54 -0.55 -16.43 16 6 C 0.65 29.76 8.01 129.79 1.04 30.80 16 7 O -0.60 -28.12 11.54 19.82 0.23 -27.89 16 8 N -0.67 -32.42 4.36 -577.35 -2.52 -34.93 16 9 C 0.27 12.28 2.57 43.50 0.11 12.39 16 10 H 0.08 3.48 7.58 -2.39 -0.02 3.46 16 11 C -0.55 -25.55 8.66 25.60 0.22 -25.33 16 12 H 0.08 3.59 7.81 -2.91 -0.02 3.57 16 13 C 0.04 1.95 5.23 84.65 0.44 2.40 16 14 N -0.88 -46.43 11.58 21.45 0.25 -46.18 16 15 Si 0.96 39.27 29.54 68.60 2.03 41.30 16 16 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 17 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 19 C 0.53 23.30 5.96 87.66 0.52 23.82 16 20 O -0.53 -27.56 13.19 18.46 0.24 -27.32 16 21 N -0.60 -20.29 5.26 -304.48 -1.60 -21.89 16 22 C 0.01 0.34 7.93 38.68 0.31 0.64 16 23 C 0.14 3.17 8.73 38.70 0.34 3.51 16 24 N -0.78 -8.41 9.00 -52.78 -0.47 -8.89 16 25 C 0.37 10.72 9.15 25.14 0.23 10.95 16 26 O -0.43 -13.99 18.05 -4.06 -0.07 -14.06 16 27 C 0.33 12.51 8.42 24.84 0.21 12.72 16 28 O -0.43 -20.94 16.04 17.20 0.28 -20.66 16 29 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.06 2.15 5.88 -2.38 -0.01 2.13 16 32 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.06 2.28 5.88 -2.38 -0.01 2.26 16 36 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.05 1.57 8.14 -2.39 -0.02 1.56 16 38 H 0.40 20.68 7.58 -92.71 -0.70 19.98 16 39 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 40 H 0.43 11.26 8.70 -92.71 -0.81 10.45 16 41 H 0.43 2.72 8.95 -92.71 -0.83 1.89 16 42 H 0.43 2.68 8.95 -92.71 -0.83 1.85 16 Total: -1.00 -74.91 367.83 1.03 -73.88 By element: Atomic # 1 Polarization: 41.17 SS G_CDS: -2.02 Total: 39.15 kcal Atomic # 6 Polarization: 58.68 SS G_CDS: 5.25 Total: 63.93 kcal Atomic # 7 Polarization: -107.55 SS G_CDS: -4.34 Total: -111.89 kcal Atomic # 8 Polarization: -106.48 SS G_CDS: 0.12 Total: -106.36 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.30 kcal Total: -74.91 1.03 -73.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180777906.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.122 kcal (2) G-P(sol) polarization free energy of solvation -74.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds