Wall clock time and date at job start Tue Mar 31 2020 22:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31244 * 124.05439 * 2 1 4 4 N 1.27338 * 120.04034 * 180.02562 * 3 2 1 5 5 S 1.56639 * 109.73815 * 359.69832 * 4 3 2 6 6 C 1.38245 * 124.06045 * 180.02562 * 2 1 3 7 7 C 1.47176 * 128.47254 * 359.96872 * 6 2 1 8 8 O 1.21618 * 120.00039 * 0.02562 * 7 6 2 9 9 N 1.34775 * 120.00014 * 180.02562 * 7 6 2 10 10 C 1.47426 * 125.64777 * 359.97438 * 9 7 6 11 11 C 1.54910 * 104.83209 * 155.89013 * 10 9 7 12 12 C 1.55154 * 101.58031 * 37.01037 * 11 10 9 13 13 H 1.09002 * 110.72203 * 82.86098 * 12 11 10 14 14 N 1.46896 * 110.87016 * 206.06232 * 12 11 10 15 15 C 1.46901 * 110.99989 * 200.06265 * 14 12 11 16 16 C 1.50703 * 109.46972 * 180.02562 * 15 14 12 17 17 O 1.21293 * 120.00413 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99556 * 180.02562 * 16 15 14 19 19 C 1.37106 * 119.99511 * 180.02562 * 18 16 15 20 20 H 1.07994 * 120.00134 * 359.97438 * 19 18 16 21 21 C 1.38949 * 119.99623 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00439 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99987 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46855 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47008 * 119.99889 * 23 21 19 26 26 H 1.48496 * 109.47218 * 240.00252 * 23 21 19 27 27 C 1.47019 * 125.65013 * 179.97438 * 9 7 6 28 28 H 1.09001 * 109.46672 * 269.97179 * 1 2 3 29 29 H 1.09000 * 109.47562 * 29.97091 * 1 2 3 30 30 H 1.09000 * 109.46850 * 149.97945 * 1 2 3 31 31 H 1.08998 * 110.36718 * 274.72906 * 10 9 7 32 32 H 1.09005 * 110.36600 * 37.05467 * 10 9 7 33 33 H 1.09002 * 111.00097 * 155.08840 * 11 10 9 34 34 H 1.08999 * 111.00452 * 278.93764 * 11 10 9 35 35 H 1.00904 * 110.99883 * 76.11611 * 14 12 11 36 36 H 1.08996 * 109.47352 * 300.00123 * 15 14 12 37 37 H 1.08998 * 109.47158 * 60.00255 * 15 14 12 38 38 H 0.96991 * 120.00311 * 359.97438 * 18 16 15 39 39 H 0.96991 * 120.00470 * 180.02562 * 22 21 19 40 40 H 1.09001 * 109.88389 * 300.46361 * 27 9 7 41 41 H 1.09003 * 109.87977 * 61.62701 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2419 1.0874 0.0000 4 7 3.5122 0.9982 -0.0005 5 16 3.9367 -0.5095 0.0067 6 6 2.2812 -1.1453 -0.0005 7 6 1.8395 -2.5492 -0.0005 8 8 0.6523 -2.8131 -0.0005 9 7 2.7506 -3.5423 -0.0005 10 6 4.2142 -3.3656 -0.0011 11 6 4.7720 -4.6749 0.6108 12 6 3.7978 -5.7316 0.0262 13 1 4.0994 -6.0186 -0.9812 14 7 3.7195 -6.9105 0.8990 15 6 3.2080 -8.0758 0.1651 16 6 3.1412 -9.2629 1.0911 17 8 3.4853 -9.1494 2.2486 18 7 2.6990 -10.4508 0.6329 19 6 2.6378 -11.5307 1.4754 20 1 2.9442 -11.4295 2.5060 21 6 2.1814 -12.7552 1.0032 22 7 1.8081 -12.8782 -0.2508 23 14 2.0986 -14.2268 2.1509 24 1 2.5724 -13.8288 3.5009 25 1 0.6962 -14.7071 2.2395 26 1 2.9620 -15.3143 1.6245 27 6 2.4495 -4.9814 0.0000 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 4.5804 -3.2368 -1.0196 32 1 4.4933 -2.5103 0.6143 33 1 5.7933 -4.8580 0.2770 34 1 4.7165 -4.6521 1.6991 35 1 3.1555 -6.7204 1.7138 36 1 2.2107 -7.8561 -0.2159 37 1 3.8737 -8.3013 -0.6680 38 1 2.4235 -10.5415 -0.2927 39 1 1.4892 -13.7329 -0.5803 40 1 1.8652 -5.2375 0.8838 41 1 1.8965 -5.2447 -0.9017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180871203.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:14 Heat of formation + Delta-G solvation = 14.813456 kcal Electronic energy + Delta-G solvation = -26034.725945 eV Core-core repulsion = 22077.671046 eV Total energy + Delta-G solvation = -3957.054898 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.36886 -40.43125 -38.56002 -37.80755 -34.96109 -33.88380 -33.67290 -31.42241 -31.11881 -29.61226 -28.34956 -27.35032 -26.24652 -24.45840 -23.49595 -22.53147 -21.03782 -19.81322 -19.33767 -19.06465 -17.99580 -17.61678 -16.96426 -16.42885 -16.08555 -15.94316 -15.39089 -14.78291 -14.74175 -14.52123 -14.34705 -13.86313 -13.78020 -13.58404 -13.46364 -13.28881 -13.17456 -12.72567 -12.70005 -12.43778 -12.15729 -11.97216 -11.86840 -11.56073 -11.51099 -11.20967 -11.09495 -10.61190 -10.37429 -10.35490 -10.26648 -10.23574 -10.14985 -9.56654 -9.17742 -8.58793 -8.23408 -8.01400 -6.46123 -3.87133 -0.70313 0.35880 1.03742 1.52110 2.31223 2.52648 3.13560 3.24710 3.31651 3.45035 3.80392 3.83980 3.96654 4.13010 4.14262 4.21464 4.43923 4.70194 4.81768 4.87898 4.92930 5.01606 5.06729 5.21211 5.21246 5.32925 5.41565 5.44414 5.65491 5.67119 5.73922 5.78397 5.82088 5.87793 6.18861 6.86295 7.01399 7.24025 7.42751 7.51513 7.54352 8.01365 8.55558 9.13262 9.48803 9.99481 10.71494 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029358 B = 0.001917 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.524378 B =14606.202120 C =15160.656326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.103 3.897 3 N -0.250 5.250 4 N -0.267 5.267 5 S 0.426 5.574 6 C -0.293 4.293 7 C 0.615 3.385 8 O -0.512 6.512 9 N -0.607 5.607 10 C 0.085 3.915 11 C -0.116 4.116 12 C 0.078 3.922 13 H 0.100 0.900 14 N -0.651 5.651 15 C 0.047 3.953 16 C 0.439 3.561 17 O -0.584 6.584 18 N -0.562 5.562 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.901 5.901 23 Si 0.930 3.070 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.281 1.281 27 C 0.078 3.922 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.354 0.646 36 H 0.047 0.953 37 H 0.089 0.911 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.077 0.923 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.499 23.634 -4.654 24.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.044 4.044 3 N -0.117 5.117 4 N -0.246 5.246 5 S 0.563 5.437 6 C -0.433 4.433 7 C 0.401 3.599 8 O -0.389 6.389 9 N -0.341 5.341 10 C -0.040 4.040 11 C -0.155 4.155 12 C -0.034 4.034 13 H 0.118 0.882 14 N -0.283 5.283 15 C -0.085 4.085 16 C 0.224 3.776 17 O -0.468 6.468 18 N -0.198 5.198 19 C -0.429 4.429 20 H 0.122 0.878 21 C -0.180 4.180 22 N -0.542 5.542 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.207 1.207 27 C -0.046 4.046 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.120 0.880 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.175 0.825 36 H 0.065 0.935 37 H 0.108 0.892 38 H 0.226 0.774 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.247 24.418 -4.043 25.301 hybrid contribution -2.384 -1.141 -0.228 2.653 sum 2.863 23.277 -4.271 23.838 Atomic orbital electron populations 1.20553 0.83671 1.05076 1.04518 1.22993 1.00291 0.85147 0.96008 1.70732 0.97041 1.27962 1.15932 1.78743 1.09420 1.17868 1.18617 1.82798 1.09705 0.99890 1.51286 1.27637 0.98182 0.99650 1.17860 1.16035 0.85031 0.81425 0.77439 1.90844 1.15284 1.82715 1.50016 1.48204 1.06670 1.06636 1.72600 1.22746 0.79712 0.99632 1.01872 1.22790 0.99831 0.90875 1.02003 1.22734 0.92169 0.90239 0.98226 0.88238 1.60194 1.58079 1.01876 1.08162 1.21764 0.98851 0.90972 0.96958 1.19749 0.84570 0.84317 0.88927 1.90534 1.53398 1.84310 1.18568 1.41868 1.56701 1.08109 1.13164 1.19753 1.40708 0.87188 0.95255 0.87820 1.25277 0.96951 0.99170 0.96556 1.69612 1.43865 1.26456 1.14242 0.85796 0.77834 0.80558 0.80139 1.19191 1.20740 1.20722 1.23062 0.99747 0.78510 1.03263 0.89174 0.89749 0.88028 0.89803 0.90783 0.88488 0.89403 0.82484 0.93486 0.89249 0.77430 0.91866 0.90469 0.90553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 9.90 36.00 0.36 -0.27 16 2 C 0.10 1.03 7.00 -82.84 -0.58 0.45 16 3 N -0.25 -2.76 11.54 33.42 0.39 -2.38 16 4 N -0.27 -2.75 12.51 60.35 0.75 -1.99 16 5 S 0.43 3.11 19.60 -107.50 -2.11 1.00 16 6 C -0.29 -2.81 6.65 -35.95 -0.24 -3.05 16 7 C 0.61 6.81 7.84 -12.63 -0.10 6.71 16 8 O -0.51 -7.12 15.22 5.26 0.08 -7.04 16 9 N -0.61 -5.68 3.33 -171.88 -0.57 -6.26 16 10 C 0.09 0.54 5.76 -2.53 -0.01 0.53 16 11 C -0.12 -0.85 6.78 -24.58 -0.17 -1.01 16 12 C 0.08 0.74 3.23 -65.88 -0.21 0.53 16 13 H 0.10 0.84 7.89 -51.93 -0.41 0.43 16 14 N -0.65 -8.92 5.99 -106.06 -0.64 -9.55 16 15 C 0.05 0.74 6.02 -4.97 -0.03 0.71 16 16 C 0.44 9.81 7.82 -10.98 -0.09 9.73 16 17 O -0.58 -15.20 15.78 5.55 0.09 -15.11 16 18 N -0.56 -13.73 5.29 -10.96 -0.06 -13.79 16 19 C -0.30 -8.16 9.68 -14.93 -0.14 -8.30 16 20 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.02 13.05 55.50 0.72 -23.30 16 23 Si 0.93 20.68 29.55 -169.99 -5.02 15.66 16 24 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 27 C 0.08 0.79 6.52 -3.07 -0.02 0.77 16 28 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.10 0.91 6.47 -51.93 -0.34 0.57 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.39 5.15 -33.69 -0.17 0.22 16 33 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.35 5.18 7.85 -39.29 -0.31 4.88 16 36 H 0.05 0.66 8.13 -51.93 -0.42 0.24 16 37 H 0.09 1.26 8.08 -51.93 -0.42 0.84 16 38 H 0.39 9.13 7.90 -40.82 -0.32 8.81 16 39 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 40 H 0.08 0.88 7.57 -51.93 -0.39 0.49 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 359.23 15.07 5.41 5.41 Total: -1.00 -33.36 359.23 -7.11 -40.47 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -4.83 Total: 9.60 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: -1.33 Total: 7.26 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: 0.60 Total: -57.26 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: 0.17 Total: -22.14 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 3.11 SS G_CDS: -2.11 Total: 1.00 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.36 -7.11 -40.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180871203.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.288 kcal (2) G-P(sol) polarization free energy of solvation -33.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds