Wall clock time and date at job start Tue Mar 31 2020 22:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31244 * 124.05439 * 2 1 4 4 N 1.27338 * 120.04034 * 180.02562 * 3 2 1 5 5 S 1.56639 * 109.73815 * 359.69832 * 4 3 2 6 6 C 1.38245 * 124.06045 * 180.02562 * 2 1 3 7 7 C 1.47176 * 128.47254 * 359.96872 * 6 2 1 8 8 O 1.21618 * 120.00039 * 0.02562 * 7 6 2 9 9 N 1.34775 * 120.00014 * 180.02562 * 7 6 2 10 10 C 1.47426 * 125.64777 * 359.97438 * 9 7 6 11 11 C 1.54910 * 104.83209 * 155.89013 * 10 9 7 12 12 C 1.55154 * 101.58031 * 37.01037 * 11 10 9 13 13 H 1.09002 * 110.72203 * 82.86098 * 12 11 10 14 14 N 1.46896 * 110.87016 * 206.06232 * 12 11 10 15 15 C 1.46901 * 110.99989 * 200.06265 * 14 12 11 16 16 C 1.50703 * 109.46972 * 180.02562 * 15 14 12 17 17 O 1.21293 * 120.00413 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99556 * 180.02562 * 16 15 14 19 19 C 1.37106 * 119.99511 * 180.02562 * 18 16 15 20 20 H 1.07994 * 120.00134 * 359.97438 * 19 18 16 21 21 C 1.38949 * 119.99623 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00439 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99987 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46855 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47008 * 119.99889 * 23 21 19 26 26 H 1.48496 * 109.47218 * 240.00252 * 23 21 19 27 27 C 1.47019 * 125.65013 * 179.97438 * 9 7 6 28 28 H 1.09001 * 109.46672 * 269.97179 * 1 2 3 29 29 H 1.09000 * 109.47562 * 29.97091 * 1 2 3 30 30 H 1.09000 * 109.46850 * 149.97945 * 1 2 3 31 31 H 1.08998 * 110.36718 * 274.72906 * 10 9 7 32 32 H 1.09005 * 110.36600 * 37.05467 * 10 9 7 33 33 H 1.09002 * 111.00097 * 155.08840 * 11 10 9 34 34 H 1.08999 * 111.00452 * 278.93764 * 11 10 9 35 35 H 1.00904 * 110.99883 * 76.11611 * 14 12 11 36 36 H 1.08996 * 109.47352 * 300.00123 * 15 14 12 37 37 H 1.08998 * 109.47158 * 60.00255 * 15 14 12 38 38 H 0.96991 * 120.00311 * 359.97438 * 18 16 15 39 39 H 0.96991 * 120.00470 * 180.02562 * 22 21 19 40 40 H 1.09001 * 109.88389 * 300.46361 * 27 9 7 41 41 H 1.09003 * 109.87977 * 61.62701 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2419 1.0874 0.0000 4 7 3.5122 0.9982 -0.0005 5 16 3.9367 -0.5095 0.0067 6 6 2.2812 -1.1453 -0.0005 7 6 1.8395 -2.5492 -0.0005 8 8 0.6523 -2.8131 -0.0005 9 7 2.7506 -3.5423 -0.0005 10 6 4.2142 -3.3656 -0.0011 11 6 4.7720 -4.6749 0.6108 12 6 3.7978 -5.7316 0.0262 13 1 4.0994 -6.0186 -0.9812 14 7 3.7195 -6.9105 0.8990 15 6 3.2080 -8.0758 0.1651 16 6 3.1412 -9.2629 1.0911 17 8 3.4853 -9.1494 2.2486 18 7 2.6990 -10.4508 0.6329 19 6 2.6378 -11.5307 1.4754 20 1 2.9442 -11.4295 2.5060 21 6 2.1814 -12.7552 1.0032 22 7 1.8081 -12.8782 -0.2508 23 14 2.0986 -14.2268 2.1509 24 1 2.5724 -13.8288 3.5009 25 1 0.6962 -14.7071 2.2395 26 1 2.9620 -15.3143 1.6245 27 6 2.4495 -4.9814 0.0000 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 4.5804 -3.2368 -1.0196 32 1 4.4933 -2.5103 0.6143 33 1 5.7933 -4.8580 0.2770 34 1 4.7165 -4.6521 1.6991 35 1 3.1555 -6.7204 1.7138 36 1 2.2107 -7.8561 -0.2159 37 1 3.8737 -8.3013 -0.6680 38 1 2.4235 -10.5415 -0.2927 39 1 1.4892 -13.7329 -0.5803 40 1 1.8652 -5.2375 0.8838 41 1 1.8965 -5.2447 -0.9017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180871203.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:13 Heat of formation + Delta-G solvation = -11.813600 kcal Electronic energy + Delta-G solvation = -26035.880581 eV Core-core repulsion = 22077.671046 eV Total energy + Delta-G solvation = -3958.209534 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.09867 -41.22073 -40.12799 -38.87721 -36.23624 -35.60498 -34.39509 -33.26320 -32.10776 -30.33729 -29.27109 -28.07386 -27.64367 -25.87905 -24.48858 -23.22340 -21.83324 -21.09367 -20.51742 -19.90916 -19.74308 -18.45765 -17.83551 -17.50485 -17.21735 -16.84902 -16.67360 -16.31753 -15.94993 -15.55118 -15.42116 -15.24404 -14.92259 -14.38963 -14.25921 -14.14627 -13.97855 -13.90985 -13.54088 -13.47324 -13.37402 -13.20972 -12.91036 -12.78924 -12.59620 -12.46184 -12.38262 -12.10937 -11.87285 -11.50367 -11.43732 -11.06803 -10.94913 -10.82918 -10.33654 -10.00246 -9.92756 -9.38818 -8.46028 -5.94322 -1.42153 -0.31281 0.36056 0.77235 1.37222 1.42884 1.55453 1.57013 1.72739 2.07095 2.29718 2.74489 2.88830 3.16745 3.21749 3.42713 3.47964 3.54973 3.73114 4.06593 4.14406 4.19426 4.27651 4.33409 4.43015 4.50471 4.60796 4.61811 4.71236 4.72195 4.73872 4.94896 5.12199 5.17294 5.19318 5.42532 5.88674 6.08452 6.12848 6.30909 6.53545 6.61085 6.73650 7.14066 7.58120 8.13194 8.71426 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029358 B = 0.001917 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.524378 B =14606.202120 C =15160.656326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.096 3.904 3 N -0.275 5.275 4 N -0.299 5.299 5 S 0.518 5.482 6 C -0.315 4.315 7 C 0.612 3.388 8 O -0.550 6.550 9 N -0.605 5.605 10 C 0.083 3.917 11 C -0.110 4.110 12 C 0.082 3.918 13 H 0.121 0.879 14 N -0.662 5.662 15 C 0.062 3.938 16 C 0.437 3.563 17 O -0.624 6.624 18 N -0.574 5.574 19 C -0.331 4.331 20 H 0.079 0.921 21 C -0.014 4.014 22 N -0.920 5.920 23 Si 0.991 3.009 24 H -0.273 1.273 25 H -0.272 1.272 26 H -0.271 1.271 27 C 0.080 3.920 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.114 0.886 32 H 0.086 0.914 33 H 0.120 0.880 34 H 0.077 0.923 35 H 0.345 0.655 36 H 0.067 0.933 37 H 0.114 0.886 38 H 0.397 0.603 39 H 0.277 0.723 40 H 0.057 0.943 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.970 24.176 -5.643 25.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.052 4.052 3 N -0.140 5.140 4 N -0.279 5.279 5 S 0.656 5.344 6 C -0.455 4.455 7 C 0.399 3.601 8 O -0.430 6.430 9 N -0.338 5.338 10 C -0.041 4.041 11 C -0.149 4.149 12 C -0.029 4.029 13 H 0.138 0.862 14 N -0.293 5.293 15 C -0.070 4.070 16 C 0.224 3.776 17 O -0.511 6.511 18 N -0.211 5.211 19 C -0.461 4.461 20 H 0.097 0.903 21 C -0.214 4.214 22 N -0.561 5.561 23 Si 0.815 3.185 24 H -0.198 1.198 25 H -0.198 1.198 26 H -0.196 1.196 27 C -0.044 4.044 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.109 0.891 31 H 0.132 0.868 32 H 0.104 0.896 33 H 0.138 0.862 34 H 0.096 0.904 35 H 0.165 0.835 36 H 0.085 0.915 37 H 0.132 0.868 38 H 0.231 0.769 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.749 24.991 -5.063 26.377 hybrid contribution -2.736 -1.287 0.099 3.025 sum 4.013 23.704 -4.964 24.548 Atomic orbital electron populations 1.20563 0.83031 1.05158 1.04894 1.23235 1.01021 0.85213 0.95739 1.70788 0.97335 1.28587 1.17285 1.78481 1.09472 1.20370 1.19543 1.82338 1.06730 0.97191 1.48165 1.27590 1.00190 0.98883 1.18865 1.16216 0.84758 0.82119 0.77002 1.90820 1.16892 1.83391 1.51867 1.48258 1.07887 1.06030 1.71642 1.23009 0.77655 0.99586 1.03815 1.22795 1.00428 0.90203 1.01431 1.22849 0.92370 0.89021 0.98660 0.86151 1.60230 1.57712 1.02821 1.08564 1.21635 1.00823 0.88816 0.95731 1.20938 0.82083 0.85259 0.89287 1.90502 1.54534 1.85179 1.20863 1.41947 1.57635 1.08457 1.13089 1.19683 1.42537 0.88989 0.94908 0.90345 1.26019 0.96143 1.01140 0.98053 1.69666 1.43898 1.27332 1.15185 0.84894 0.78222 0.77429 0.77941 1.19805 1.19775 1.19621 1.22959 0.99951 0.79179 1.02333 0.88641 0.88390 0.89101 0.86816 0.89630 0.86222 0.90449 0.83474 0.91528 0.86784 0.76914 0.91343 0.92439 0.90638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.24 9.90 71.24 0.70 -0.53 16 2 C 0.10 1.87 7.00 42.65 0.30 2.17 16 3 N -0.28 -5.86 11.54 -48.18 -0.56 -6.41 16 4 N -0.30 -5.69 12.51 37.02 0.46 -5.23 16 5 S 0.52 6.23 19.60 -56.49 -1.11 5.12 16 6 C -0.31 -5.66 6.65 24.62 0.16 -5.50 16 7 C 0.61 13.09 7.84 86.59 0.68 13.77 16 8 O -0.55 -15.52 15.22 -4.09 -0.06 -15.58 16 9 N -0.60 -10.25 3.33 -815.96 -2.71 -12.96 16 10 C 0.08 0.76 5.76 86.86 0.50 1.27 16 11 C -0.11 -1.25 6.78 31.99 0.22 -1.03 16 12 C 0.08 1.34 3.23 46.10 0.15 1.49 16 13 H 0.12 1.54 7.89 -2.39 -0.02 1.52 16 14 N -0.66 -17.16 5.99 -489.46 -2.93 -20.09 16 15 C 0.06 1.85 6.02 85.56 0.52 2.37 16 16 C 0.44 19.61 7.82 87.66 0.69 20.30 16 17 O -0.62 -33.18 15.78 -3.07 -0.05 -33.22 16 18 N -0.57 -28.40 5.29 -306.98 -1.62 -30.02 16 19 C -0.33 -18.45 9.68 84.04 0.81 -17.64 16 20 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 21 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 22 N -0.92 -48.79 13.05 21.66 0.28 -48.51 16 23 Si 0.99 42.38 29.55 68.60 2.03 44.41 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 26 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 27 C 0.08 1.50 6.52 86.73 0.57 2.07 16 28 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.09 1.68 6.47 -2.39 -0.02 1.67 16 31 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.09 0.59 5.15 -13.98 -0.07 0.51 16 33 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.35 10.03 7.85 -89.69 -0.70 9.33 16 36 H 0.07 1.76 8.13 -2.39 -0.02 1.74 16 37 H 0.11 2.89 8.08 -2.39 -0.02 2.87 16 38 H 0.40 18.56 7.90 -92.72 -0.73 17.82 16 39 H 0.28 13.75 8.31 -92.72 -0.77 12.98 16 40 H 0.06 1.32 7.57 -2.39 -0.02 1.30 16 41 H 0.08 1.43 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -74.32 359.23 -0.90 -75.22 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: -0.39 Total: 28.83 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: 5.76 Total: 18.46 kcal Atomic # 7 Polarization: -116.14 SS G_CDS: -7.08 Total: -123.22 kcal Atomic # 8 Polarization: -48.70 SS G_CDS: -0.11 Total: -48.81 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 16 Polarization: 6.23 SS G_CDS: -1.11 Total: 5.12 kcal Total: -74.32 -0.90 -75.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180871203.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.402 kcal (2) G-P(sol) polarization free energy of solvation -74.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds