Wall clock time and date at job start Tue Mar 31 2020 22:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86803 * 120.00227 * 2 1 4 4 H 1.48496 * 109.47061 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46707 * 299.99782 * 3 2 1 6 6 H 1.48497 * 109.47352 * 59.99896 * 3 2 1 7 7 C 1.38800 * 120.00116 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00512 * 179.97438 * 7 2 1 9 9 S 1.76206 * 119.99937 * 0.02562 * 7 2 1 10 10 C 1.80994 * 99.99977 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47185 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99550 * 359.97438 * 11 10 9 13 13 N 1.34767 * 120.00114 * 179.97438 * 11 10 9 14 14 C 1.47422 * 125.64951 * 359.97300 * 13 11 10 15 15 C 1.54921 * 104.83281 * 155.91007 * 14 13 11 16 16 C 1.55160 * 101.57758 * 37.01088 * 15 14 13 17 17 H 1.08998 * 110.72247 * 83.03874 * 16 15 14 18 18 N 1.46898 * 110.71480 * 206.13562 * 16 15 14 19 19 C 1.46906 * 110.99888 * 202.55847 * 18 16 15 20 20 C 1.50699 * 109.47140 * 180.02562 * 19 18 16 21 21 C 1.38238 * 120.40432 * 269.72710 * 20 19 18 22 22 N 1.31853 * 120.81927 * 179.68457 * 21 20 19 23 23 C 1.31873 * 121.74618 * 0.62445 * 22 21 20 24 24 C 1.38425 * 120.72891 * 359.66219 * 23 22 21 25 25 F 1.35095 * 120.44257 * 180.02562 * 24 23 22 26 26 C 1.38589 * 120.40792 * 90.00212 * 20 19 18 27 27 C 1.47324 * 125.61624 * 180.19968 * 13 11 10 28 28 H 0.96998 * 119.99885 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.47264 * 60.00158 * 10 9 7 30 30 H 1.09006 * 109.47361 * 299.99696 * 10 9 7 31 31 H 1.08997 * 110.36640 * 37.07345 * 14 13 11 32 32 H 1.08999 * 110.36993 * 274.74575 * 14 13 11 33 33 H 1.09003 * 111.00043 * 278.93623 * 15 14 13 34 34 H 1.09001 * 111.00454 * 155.08139 * 15 14 13 35 35 H 1.00902 * 111.00533 * 78.60253 * 18 16 15 36 36 H 1.09000 * 109.47033 * 300.00113 * 19 18 16 37 37 H 1.09001 * 109.46544 * 60.00058 * 19 18 16 38 38 H 1.07998 * 119.59095 * 359.97311 * 21 20 19 39 39 H 1.07999 * 119.63500 * 179.68924 * 23 22 21 40 40 H 1.07999 * 120.79849 * 0.02562 * 26 20 19 41 41 H 1.09001 * 110.06057 * 61.67362 * 27 13 11 42 42 H 1.08997 * 109.84965 * 300.42122 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8916 2.3965 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0021 11 6 1.9873 -5.3028 0.0017 12 8 0.7910 -5.5023 0.0009 13 7 2.8440 -6.3431 0.0022 14 6 4.3150 -6.2448 0.0026 15 6 4.8016 -7.5824 0.6143 16 6 3.7727 -8.5853 0.0287 17 1 4.0609 -8.8900 -0.9774 18 7 3.6323 -9.7564 0.9043 19 6 3.1158 -10.9121 0.1589 20 6 2.9848 -12.0913 1.0880 21 6 4.0376 -12.9718 1.2536 22 7 3.9341 -14.0028 2.0691 23 6 2.8284 -14.2435 2.7463 24 6 1.7304 -13.4090 2.6276 25 9 0.6008 -13.6608 3.3245 26 6 1.8056 -12.3096 1.7825 27 6 2.4649 -7.7667 -0.0023 28 1 -0.4850 0.8400 -0.0004 29 1 3.1237 -3.7310 0.8925 30 1 3.1251 -3.7318 -0.8875 31 1 4.6389 -5.4059 0.6185 32 1 4.6882 -6.1354 -1.0156 33 1 4.7467 -7.5570 1.7027 34 1 5.8119 -7.8197 0.2810 35 1 3.0455 -9.5464 1.6978 36 1 2.1387 -10.6683 -0.2582 37 1 3.8041 -11.1603 -0.6491 38 1 4.9578 -12.8107 0.7119 39 1 2.7793 -15.1009 3.4012 40 1 0.9651 -11.6409 1.6690 41 1 1.9022 -8.0009 -0.9060 42 1 1.8651 -7.9928 0.8793 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181097126.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:48 Heat of formation + Delta-G solvation = -62.447366 kcal Electronic energy + Delta-G solvation = -25285.385406 eV Core-core repulsion = 21305.060266 eV Total energy + Delta-G solvation = -3980.325141 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.04016 -41.27900 -40.97979 -38.93317 -36.49283 -34.60378 -33.80262 -32.43560 -31.47479 -30.82202 -28.80700 -27.67898 -26.38612 -24.78443 -24.20984 -22.89032 -21.83942 -20.75558 -19.60648 -18.48258 -18.38200 -18.09787 -17.82326 -17.59497 -16.90183 -16.87740 -16.71521 -16.19825 -15.99960 -15.67472 -15.10648 -15.06677 -14.63468 -14.52836 -14.40199 -14.27354 -14.12757 -13.85740 -13.68476 -13.56976 -13.23513 -13.14549 -12.92371 -12.87948 -12.61721 -12.48082 -12.39767 -11.78480 -11.66359 -11.17320 -11.03414 -10.89173 -10.67391 -10.29973 -9.97183 -9.77991 -9.46714 -8.70261 -8.36386 -6.15345 -0.14667 0.00598 1.22481 1.41035 1.44105 1.52790 1.56412 2.05315 2.25722 2.52140 2.93513 2.98013 3.14036 3.26206 3.42690 3.51376 3.63707 3.68375 3.71653 3.88081 3.90059 4.03727 4.13910 4.21344 4.30965 4.39174 4.40716 4.42909 4.63531 4.72248 4.76049 4.81171 4.82261 4.83640 5.06844 5.11017 5.22459 5.33706 5.40561 5.58260 5.91339 6.18488 6.21437 6.34996 6.77776 7.04886 7.07943 8.73201 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025749 B = 0.001767 C = 0.001691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.169816 B =15843.892972 C =16549.475583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.119 4.119 11 C 0.543 3.457 12 O -0.570 6.570 13 N -0.615 5.615 14 C 0.087 3.913 15 C -0.107 4.107 16 C 0.093 3.907 17 H 0.120 0.880 18 N -0.667 5.667 19 C 0.099 3.901 20 C -0.101 4.101 21 C 0.110 3.890 22 N -0.480 5.480 23 C 0.069 3.931 24 C 0.033 3.967 25 F -0.139 7.139 26 C -0.109 4.109 27 C 0.077 3.923 28 H 0.271 0.729 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.117 0.883 35 H 0.344 0.656 36 H 0.051 0.949 37 H 0.114 0.886 38 H 0.187 0.813 39 H 0.182 0.818 40 H 0.153 0.847 41 H 0.060 0.940 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.375 -27.541 0.958 31.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.822 3.178 4 H -0.179 1.179 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.692 4.692 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.270 4.270 11 C 0.332 3.668 12 O -0.449 6.449 13 N -0.350 5.350 14 C -0.035 4.035 15 C -0.145 4.145 16 C -0.018 4.018 17 H 0.138 0.862 18 N -0.297 5.297 19 C -0.030 4.030 20 C -0.103 4.103 21 C -0.048 4.048 22 N -0.187 5.187 23 C -0.089 4.089 24 C 0.012 3.988 25 F -0.118 7.118 26 C -0.136 4.136 27 C -0.048 4.048 28 H 0.080 0.920 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.094 0.906 34 H 0.135 0.865 35 H 0.163 0.837 36 H 0.069 0.931 37 H 0.132 0.868 38 H 0.204 0.796 39 H 0.199 0.801 40 H 0.171 0.829 41 H 0.078 0.922 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 13.759 -28.483 1.019 31.648 hybrid contribution -0.997 2.083 0.141 2.313 sum 12.762 -26.400 1.159 29.346 Atomic orbital electron populations 1.70191 1.08026 1.28590 1.48019 1.26156 0.95986 1.03395 0.93686 0.84882 0.78664 0.76174 0.78083 1.17861 1.19902 1.19951 1.23226 0.95357 0.91790 1.58868 0.89796 1.85604 1.10648 0.99408 1.97041 1.23299 1.03362 0.93931 1.06422 1.19831 0.85463 0.86131 0.75414 1.90685 1.17249 1.85845 1.51168 1.48447 1.08254 1.05275 1.73068 1.22753 0.77345 1.00566 1.02815 1.22771 1.00027 0.90631 1.01114 1.22671 0.91621 0.88980 0.98566 0.86230 1.60728 1.55239 1.03914 1.09798 1.20991 1.00737 0.86780 0.94455 1.20783 0.93019 0.98191 0.98306 1.23206 0.99067 0.88592 0.93923 1.67840 1.24359 1.19867 1.06659 1.23208 0.87434 0.99591 0.98700 1.18958 0.84786 0.98488 0.96592 1.91519 1.49146 1.93928 1.77178 1.21852 1.00098 0.96497 0.95123 1.22978 0.99768 0.80705 1.01342 0.91973 0.87542 0.87421 0.89952 0.89228 0.90568 0.86499 0.83679 0.93105 0.86834 0.79623 0.80135 0.82915 0.92201 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.07 13.22 21.65 0.29 -55.79 16 2 C 0.01 0.71 5.49 84.86 0.47 1.17 16 3 Si 1.00 43.35 29.55 68.60 2.03 45.37 16 4 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 5 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.54 -31.07 9.50 67.95 0.65 -30.43 16 8 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 9 S -0.15 -8.64 20.57 -56.49 -1.16 -9.81 16 10 C -0.12 -4.80 5.16 71.24 0.37 -4.43 16 11 C 0.54 20.75 7.87 87.66 0.69 21.44 16 12 O -0.57 -27.31 16.19 -3.04 -0.05 -27.36 16 13 N -0.62 -15.97 3.33 -811.03 -2.70 -18.67 16 14 C 0.09 1.42 6.69 86.86 0.58 2.00 16 15 C -0.11 -1.12 6.77 31.99 0.22 -0.90 16 16 C 0.09 0.98 3.24 46.10 0.15 1.13 16 17 H 0.12 0.85 7.86 -2.39 -0.02 0.84 16 18 N -0.67 -6.25 6.36 -489.44 -3.11 -9.36 16 19 C 0.10 0.72 5.70 85.56 0.49 1.21 16 20 C -0.10 -1.02 5.41 -19.78 -0.11 -1.12 16 21 C 0.11 1.21 10.86 84.69 0.92 2.13 16 22 N -0.48 -7.16 10.36 -195.65 -2.03 -9.19 16 23 C 0.07 0.94 11.17 84.73 0.95 1.89 16 24 C 0.03 0.49 7.34 22.47 0.17 0.65 16 25 F -0.14 -2.38 17.28 44.97 0.78 -1.61 16 26 C -0.11 -1.36 9.85 22.51 0.22 -1.14 16 27 C 0.08 1.53 6.60 86.67 0.57 2.10 16 28 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 29 H 0.11 3.89 7.85 -2.40 -0.02 3.87 16 30 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 31 H 0.08 1.37 7.48 -2.39 -0.02 1.36 16 32 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.12 0.67 8.14 -2.39 -0.02 0.66 16 35 H 0.34 3.91 8.09 -89.69 -0.73 3.18 16 36 H 0.05 0.40 8.09 -2.39 -0.02 0.38 16 37 H 0.11 0.42 8.03 -2.39 -0.02 0.40 16 38 H 0.19 1.13 8.06 -2.91 -0.02 1.10 16 39 H 0.18 1.72 8.06 -2.91 -0.02 1.69 16 40 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 41 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.05 1.21 7.53 -2.39 -0.02 1.19 16 Total: -1.00 -79.97 375.79 0.68 -79.29 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 0.32 Total: 11.40 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: 6.32 Total: -4.28 kcal Atomic # 7 Polarization: -85.45 SS G_CDS: -7.55 Total: -93.01 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.05 Total: -27.36 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.78 Total: -1.61 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.16 Total: -9.81 kcal Total: -79.97 0.68 -79.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181097126.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.841 kcal (2) G-P(sol) polarization free energy of solvation -79.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds