Wall clock time and date at job start Tue Mar 31 2020 22:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48498 * 109.46807 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46906 * 120.00270 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00008 * 3 2 1 7 7 C 1.38805 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99910 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99766 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99894 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46896 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00232 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99423 * 180.02562 * 11 10 9 14 14 C 1.47419 * 125.65408 * 359.69019 * 13 11 10 15 15 C 1.55129 * 104.72783 * 155.81707 * 14 13 11 16 16 C 1.55161 * 101.48250 * 37.29418 * 15 14 13 17 17 H 1.09001 * 110.86715 * 82.77027 * 16 15 14 18 18 N 1.46902 * 110.72022 * 205.96959 * 16 15 14 19 19 C 1.46896 * 110.99663 * 199.97755 * 18 16 15 20 20 C 1.50703 * 109.46950 * 180.02562 * 19 18 16 21 21 C 1.38233 * 119.58706 * 94.99914 * 20 19 18 22 22 C 1.38597 * 119.18713 * 179.97438 * 21 20 19 23 23 C 1.38881 * 118.39914 * 0.02562 * 22 21 20 24 24 F 1.35099 * 120.44439 * 179.97438 * 23 22 21 25 25 C 1.38423 * 119.10985 * 359.97438 * 23 22 21 26 26 N 1.31847 * 119.58740 * 274.72947 * 20 19 18 27 27 C 1.47018 * 125.64456 * 180.02562 * 13 11 10 28 28 H 0.97001 * 119.99662 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46895 * 300.00170 * 10 9 7 30 30 H 1.09003 * 109.47006 * 60.00004 * 10 9 7 31 31 H 1.09002 * 110.36673 * 274.75130 * 14 13 11 32 32 H 1.09008 * 110.36715 * 37.06969 * 14 13 11 33 33 H 1.09005 * 111.19363 * 279.19700 * 15 14 13 34 34 H 1.08992 * 110.94134 * 155.28757 * 15 14 13 35 35 H 1.00897 * 110.99513 * 323.93251 * 18 16 15 36 36 H 1.09000 * 109.47318 * 300.00345 * 19 18 16 37 37 H 1.09006 * 109.47606 * 60.00401 * 19 18 16 38 38 H 1.07996 * 120.41042 * 0.02562 * 21 20 19 39 39 H 1.07996 * 120.80080 * 180.02562 * 22 21 20 40 40 H 1.08001 * 119.63178 * 180.02562 * 25 23 22 41 41 H 1.09001 * 109.88070 * 300.43813 * 27 13 11 42 42 H 1.08996 * 109.88909 * 61.60396 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1041 1.6963 1.2125 6 1 3.1041 1.6964 -1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3027 -0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8441 -6.3431 0.0003 14 6 4.3150 -6.2449 -0.0051 15 6 4.8018 -7.5823 0.6122 16 6 3.7728 -8.5853 0.0269 17 1 4.0575 -8.8904 -0.9801 18 7 3.6325 -9.7564 0.9026 19 6 3.0586 -10.8942 0.1720 20 6 2.9295 -12.0740 1.1008 21 6 1.7299 -12.3054 1.7476 22 6 1.6201 -13.3930 2.5995 23 6 2.7283 -14.2124 2.7707 24 9 2.6674 -15.2836 3.5918 25 6 3.8961 -13.9168 2.0888 26 7 3.9604 -12.8756 1.2823 27 6 2.4665 -7.7640 -0.0008 28 1 -0.4850 0.8401 0.0004 29 1 3.1244 -3.7314 -0.8895 30 1 3.1245 -3.7314 0.8906 31 1 4.6844 -6.1385 -1.0251 32 1 4.6414 -5.4041 0.6070 33 1 4.7471 -7.5570 1.7006 34 1 5.8121 -7.8201 0.2793 35 1 4.5172 -10.0037 1.3200 36 1 2.0740 -10.6224 -0.2086 37 1 3.7103 -11.1571 -0.6613 38 1 0.8882 -11.6472 1.5903 39 1 0.6952 -13.5985 3.1177 40 1 4.7629 -14.5486 2.2154 41 1 1.8685 -7.9893 0.8823 42 1 1.9012 -7.9968 -0.9031 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181098044.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:51 Heat of formation + Delta-G solvation = -35.870633 kcal Electronic energy + Delta-G solvation = -25185.324674 eV Core-core repulsion = 21206.151987 eV Total energy + Delta-G solvation = -3979.172687 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.46050 -40.70255 -39.82046 -37.71009 -35.42884 -33.01452 -32.42338 -32.22320 -30.38822 -29.66082 -27.78316 -25.87537 -25.41477 -24.38953 -23.27376 -22.23373 -20.96983 -19.32201 -18.15243 -17.82999 -17.72310 -16.99429 -16.73647 -16.48337 -16.30358 -15.38238 -15.10388 -15.00616 -14.79583 -14.70650 -14.39859 -14.08304 -13.89589 -13.70625 -13.61541 -13.33117 -13.09865 -12.64002 -12.53012 -12.48271 -12.34727 -11.77012 -11.73170 -11.49610 -11.06240 -11.03483 -11.02491 -10.76489 -10.45170 -10.15565 -9.81931 -9.42246 -9.40608 -9.05269 -8.92094 -8.48011 -8.22769 -6.49431 -6.20779 -3.91486 0.34961 0.57392 2.85770 3.02800 3.09265 3.23859 3.26204 3.29574 3.45691 3.59907 3.70330 3.94194 4.07435 4.20269 4.22636 4.25122 4.34016 4.39568 4.79908 4.82482 4.94978 5.02212 5.11268 5.13339 5.14248 5.22749 5.26917 5.36593 5.46302 5.49808 5.52462 5.61401 5.65346 5.80155 5.87985 5.94016 6.07282 6.14484 6.44043 6.54879 6.87053 7.29000 7.59792 7.68570 8.35675 8.58242 9.24226 10.86579 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.030439 B = 0.001681 C = 0.001635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.644566 B =16651.092539 C =17119.723186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.283 1.283 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.147 4.147 11 C 0.549 3.451 12 O -0.515 6.515 13 N -0.626 5.626 14 C 0.103 3.897 15 C -0.133 4.133 16 C 0.075 3.925 17 H 0.065 0.935 18 N -0.673 5.673 19 C 0.108 3.892 20 C 0.121 3.879 21 C -0.118 4.118 22 C -0.109 4.109 23 C 0.046 3.954 24 F -0.131 7.131 25 C 0.076 3.924 26 N -0.454 5.454 27 C 0.118 3.882 28 H 0.269 0.731 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.351 0.649 36 H 0.094 0.906 37 H 0.055 0.945 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.167 0.833 41 H 0.079 0.921 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.906 -28.151 2.393 30.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.208 1.208 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.297 4.297 11 C 0.337 3.663 12 O -0.389 6.389 13 N -0.364 5.364 14 C -0.021 4.021 15 C -0.171 4.171 16 C -0.035 4.035 17 H 0.083 0.917 18 N -0.305 5.305 19 C -0.021 4.021 20 C -0.018 4.018 21 C -0.138 4.138 22 C -0.135 4.135 23 C 0.024 3.976 24 F -0.109 7.109 25 C -0.083 4.083 26 N -0.163 5.163 27 C -0.006 4.006 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.170 0.830 36 H 0.113 0.887 37 H 0.073 0.927 38 H 0.168 0.832 39 H 0.167 0.833 40 H 0.184 0.816 41 H 0.097 0.903 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.056 -27.918 2.220 29.434 hybrid contribution 1.962 0.506 0.142 2.031 sum 11.017 -27.412 2.362 29.637 Atomic orbital electron populations 1.70011 1.05946 1.27552 1.46758 1.24991 0.95027 0.98998 0.94535 0.86226 0.79239 0.81254 0.78788 1.20806 1.19939 1.19950 1.22821 0.94867 0.91640 1.59078 0.90980 1.85401 1.04966 0.96293 1.96713 1.23508 1.06458 0.94996 1.04761 1.20014 0.85666 0.85398 0.75219 1.90705 1.14966 1.85132 1.48132 1.48437 1.06545 1.05580 1.75792 1.22288 0.80648 0.98174 1.00969 1.22996 0.98199 0.93935 1.02003 1.22570 0.95503 0.90225 0.95245 0.91716 1.60408 1.32488 1.04087 1.33551 1.20868 1.01799 0.86502 0.92931 1.21202 0.89224 0.95023 0.96303 1.21978 0.99499 0.96860 0.95484 1.21741 0.98655 0.94424 0.98699 1.18851 0.96737 0.87432 0.94573 1.91535 1.96888 1.52709 1.69802 1.22856 0.96598 0.95528 0.93346 1.67524 1.30553 1.03251 1.14980 1.21831 0.95989 0.80283 1.02465 0.92131 0.89327 0.89292 0.91255 0.90004 0.89401 0.89848 0.82968 0.88740 0.92673 0.83243 0.83301 0.81559 0.90291 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.19 13.22 55.49 0.73 -25.45 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -15.28 9.50 30.94 0.29 -14.99 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.02 5.16 36.01 0.19 -2.83 16 11 C 0.55 10.68 7.87 -10.98 -0.09 10.59 16 12 O -0.52 -12.09 16.19 5.56 0.09 -12.00 16 13 N -0.63 -8.98 3.32 -170.38 -0.57 -9.54 16 14 C 0.10 1.05 6.70 -2.41 -0.02 1.04 16 15 C -0.13 -1.00 6.53 -24.46 -0.16 -1.16 16 16 C 0.07 0.60 3.24 -65.87 -0.21 0.39 16 17 H 0.06 0.47 7.89 -51.93 -0.41 0.06 16 18 N -0.67 -5.02 6.28 -106.05 -0.67 -5.69 16 19 C 0.11 0.73 5.85 -4.98 -0.03 0.70 16 20 C 0.12 0.90 6.29 -82.59 -0.52 0.38 16 21 C -0.12 -0.78 9.72 -39.45 -0.38 -1.16 16 22 C -0.11 -0.69 10.16 -39.21 -0.40 -1.09 16 23 C 0.05 0.33 7.35 -39.28 -0.29 0.04 16 24 F -0.13 -1.01 17.28 2.25 0.04 -0.98 16 25 C 0.08 0.53 11.17 -17.47 -0.20 0.34 16 26 N -0.45 -3.71 10.27 -9.42 -0.10 -3.80 16 27 C 0.12 1.40 6.55 -3.07 -0.02 1.38 16 28 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 30 H 0.09 1.70 7.85 -51.91 -0.41 1.29 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.83 7.48 -51.92 -0.39 0.44 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.35 2.46 8.49 -39.29 -0.33 2.12 16 36 H 0.09 0.58 8.02 -51.93 -0.42 0.17 16 37 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 38 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.17 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.08 1.05 8.03 -51.93 -0.42 0.63 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 376.45 15.07 5.67 5.67 Total: -1.00 -35.21 376.45 -9.67 -44.89 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -5.72 Total: -1.22 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -1.93 Total: -4.36 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: -0.60 Total: -44.49 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.09 Total: -12.00 kcal Atomic # 9 Polarization: -1.01 SS G_CDS: 0.04 Total: -0.98 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.21 -9.67 -44.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181098044.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.017 kcal (2) G-P(sol) polarization free energy of solvation -35.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds