Wall clock time and date at job start Tue Mar 31 2020 22:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48498 * 109.46807 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46906 * 120.00270 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00008 * 3 2 1 7 7 C 1.38805 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99910 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99766 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99894 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46896 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00232 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99423 * 180.02562 * 11 10 9 14 14 C 1.47419 * 125.65408 * 359.69019 * 13 11 10 15 15 C 1.55129 * 104.72783 * 155.81707 * 14 13 11 16 16 C 1.55161 * 101.48250 * 37.29418 * 15 14 13 17 17 H 1.09001 * 110.86715 * 82.77027 * 16 15 14 18 18 N 1.46902 * 110.72022 * 205.96959 * 16 15 14 19 19 C 1.46896 * 110.99663 * 199.97755 * 18 16 15 20 20 C 1.50703 * 109.46950 * 180.02562 * 19 18 16 21 21 C 1.38233 * 119.58706 * 94.99914 * 20 19 18 22 22 C 1.38597 * 119.18713 * 179.97438 * 21 20 19 23 23 C 1.38881 * 118.39914 * 0.02562 * 22 21 20 24 24 F 1.35099 * 120.44439 * 179.97438 * 23 22 21 25 25 C 1.38423 * 119.10985 * 359.97438 * 23 22 21 26 26 N 1.31847 * 119.58740 * 274.72947 * 20 19 18 27 27 C 1.47018 * 125.64456 * 180.02562 * 13 11 10 28 28 H 0.97001 * 119.99662 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46895 * 300.00170 * 10 9 7 30 30 H 1.09003 * 109.47006 * 60.00004 * 10 9 7 31 31 H 1.09002 * 110.36673 * 274.75130 * 14 13 11 32 32 H 1.09008 * 110.36715 * 37.06969 * 14 13 11 33 33 H 1.09005 * 111.19363 * 279.19700 * 15 14 13 34 34 H 1.08992 * 110.94134 * 155.28757 * 15 14 13 35 35 H 1.00897 * 110.99513 * 323.93251 * 18 16 15 36 36 H 1.09000 * 109.47318 * 300.00345 * 19 18 16 37 37 H 1.09006 * 109.47606 * 60.00401 * 19 18 16 38 38 H 1.07996 * 120.41042 * 0.02562 * 21 20 19 39 39 H 1.07996 * 120.80080 * 180.02562 * 22 21 20 40 40 H 1.08001 * 119.63178 * 180.02562 * 25 23 22 41 41 H 1.09001 * 109.88070 * 300.43813 * 27 13 11 42 42 H 1.08996 * 109.88909 * 61.60396 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1041 1.6963 1.2125 6 1 3.1041 1.6964 -1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3027 -0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8441 -6.3431 0.0003 14 6 4.3150 -6.2449 -0.0051 15 6 4.8018 -7.5823 0.6122 16 6 3.7728 -8.5853 0.0269 17 1 4.0575 -8.8904 -0.9801 18 7 3.6325 -9.7564 0.9026 19 6 3.0586 -10.8942 0.1720 20 6 2.9295 -12.0740 1.1008 21 6 1.7299 -12.3054 1.7476 22 6 1.6201 -13.3930 2.5995 23 6 2.7283 -14.2124 2.7707 24 9 2.6674 -15.2836 3.5918 25 6 3.8961 -13.9168 2.0888 26 7 3.9604 -12.8756 1.2823 27 6 2.4665 -7.7640 -0.0008 28 1 -0.4850 0.8401 0.0004 29 1 3.1244 -3.7314 -0.8895 30 1 3.1245 -3.7314 0.8906 31 1 4.6844 -6.1385 -1.0251 32 1 4.6414 -5.4041 0.6070 33 1 4.7471 -7.5570 1.7006 34 1 5.8121 -7.8201 0.2793 35 1 4.5172 -10.0037 1.3200 36 1 2.0740 -10.6224 -0.2086 37 1 3.7103 -11.1571 -0.6613 38 1 0.8882 -11.6472 1.5903 39 1 0.6952 -13.5985 3.1177 40 1 4.7629 -14.5486 2.2154 41 1 1.8685 -7.9893 0.8823 42 1 1.9012 -7.9968 -0.9031 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181098044.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:50 Heat of formation + Delta-G solvation = -60.550023 kcal Electronic energy + Delta-G solvation = -25186.394853 eV Core-core repulsion = 21206.151987 eV Total energy + Delta-G solvation = -3980.242866 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.02140 -41.27204 -40.95253 -38.85012 -36.26323 -34.57950 -33.52577 -33.05271 -31.39154 -30.78262 -28.78383 -27.65068 -26.50706 -24.90440 -24.16005 -22.82205 -21.75455 -20.64193 -19.59673 -18.68580 -18.36740 -18.09841 -17.68883 -17.32878 -16.87620 -16.86890 -16.54539 -16.20893 -15.93398 -15.60739 -15.31482 -15.03985 -14.85961 -14.53201 -14.47035 -14.25633 -14.17652 -13.87970 -13.62292 -13.35869 -13.16276 -13.13529 -13.00417 -12.85607 -12.62951 -12.40798 -12.19274 -11.79029 -11.70494 -11.12169 -10.97711 -10.96390 -10.68547 -10.27985 -9.95758 -9.68426 -9.49767 -8.67526 -8.33783 -6.12700 -0.18028 0.06963 1.24539 1.44871 1.45617 1.55792 1.57796 2.08050 2.28176 2.47607 2.94381 3.00179 3.13852 3.23921 3.34314 3.48905 3.61897 3.65092 3.78165 3.84936 3.92717 4.17450 4.24519 4.30439 4.34592 4.40736 4.45365 4.55481 4.63369 4.70291 4.76358 4.82008 4.87889 4.90108 4.97436 5.00979 5.16478 5.38128 5.42030 5.57111 5.93122 6.20190 6.30868 6.41790 6.76115 7.07024 7.12906 8.75248 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.030439 B = 0.001681 C = 0.001635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.644566 B =16651.092539 C =17119.723186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.279 1.279 5 H -0.262 1.262 6 H -0.261 1.261 7 C -0.547 4.547 8 H 0.084 0.916 9 S -0.152 6.152 10 C -0.119 4.119 11 C 0.545 3.455 12 O -0.569 6.569 13 N -0.616 5.616 14 C 0.091 3.909 15 C -0.120 4.120 16 C 0.090 3.910 17 H 0.084 0.916 18 N -0.678 5.678 19 C 0.111 3.889 20 C 0.112 3.888 21 C -0.124 4.124 22 C -0.109 4.109 23 C 0.035 3.965 24 F -0.136 7.136 25 C 0.071 3.929 26 N -0.470 5.470 27 C 0.113 3.887 28 H 0.271 0.729 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.117 0.883 35 H 0.357 0.643 36 H 0.097 0.903 37 H 0.061 0.939 38 H 0.161 0.839 39 H 0.166 0.834 40 H 0.185 0.815 41 H 0.061 0.939 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.877 -28.654 2.245 31.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.204 1.204 5 H -0.186 1.186 6 H -0.186 1.186 7 C -0.695 4.695 8 H 0.102 0.898 9 S 0.075 5.925 10 C -0.270 4.270 11 C 0.333 3.667 12 O -0.448 6.448 13 N -0.352 5.352 14 C -0.031 4.031 15 C -0.158 4.158 16 C -0.021 4.021 17 H 0.102 0.898 18 N -0.311 5.311 19 C -0.018 4.018 20 C -0.026 4.026 21 C -0.144 4.144 22 C -0.135 4.135 23 C 0.013 3.987 24 F -0.115 7.115 25 C -0.087 4.087 26 N -0.179 5.179 27 C -0.010 4.010 28 H 0.080 0.920 29 H 0.126 0.874 30 H 0.125 0.875 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.135 0.865 35 H 0.177 0.823 36 H 0.115 0.885 37 H 0.079 0.921 38 H 0.179 0.821 39 H 0.184 0.816 40 H 0.202 0.798 41 H 0.080 0.920 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.093 -28.471 2.076 31.003 hybrid contribution 1.076 0.496 0.203 1.202 sum 13.169 -27.975 2.279 31.004 Atomic orbital electron populations 1.70184 1.08003 1.28685 1.47886 1.26146 0.95974 1.03338 0.93680 0.84993 0.77799 0.75598 0.79538 1.20410 1.18620 1.18572 1.23166 0.95362 0.91868 1.59068 0.89827 1.85598 1.10579 0.99276 1.97043 1.23301 1.03387 0.93937 1.06399 1.19788 0.85444 0.86011 0.75483 1.90680 1.17181 1.85802 1.51094 1.48386 1.08139 1.05529 1.73098 1.22695 0.77702 1.00087 1.02653 1.22981 0.99509 0.91736 1.01602 1.22427 0.93134 0.90044 0.96480 0.89842 1.60296 1.32945 1.04151 1.33724 1.20867 1.02037 0.86021 0.92843 1.21371 0.89472 0.95212 0.96528 1.22156 0.99718 0.97141 0.95400 1.21988 0.99163 0.93989 0.98394 1.18983 0.97243 0.87596 0.94890 1.91520 1.96941 1.53003 1.70016 1.23163 0.97230 0.95459 0.92887 1.67544 1.30972 1.03781 1.15588 1.22016 0.98208 0.79324 1.01472 0.91984 0.87431 0.87549 0.89233 0.89713 0.89829 0.86477 0.82277 0.88484 0.92073 0.82107 0.81605 0.79804 0.92037 0.92382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.20 13.22 21.65 0.29 -55.92 16 2 C 0.01 0.76 5.49 84.86 0.47 1.23 16 3 Si 1.00 43.45 29.55 68.60 2.03 45.48 16 4 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 6 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 7 C -0.55 -31.35 9.50 67.96 0.65 -30.70 16 8 H 0.08 4.42 7.80 -2.92 -0.02 4.39 16 9 S -0.15 -8.58 20.57 -56.49 -1.16 -9.75 16 10 C -0.12 -4.87 5.16 71.24 0.37 -4.50 16 11 C 0.54 21.31 7.87 87.66 0.69 22.00 16 12 O -0.57 -27.71 16.19 -3.01 -0.05 -27.76 16 13 N -0.62 -16.94 3.32 -811.37 -2.70 -19.64 16 14 C 0.09 1.58 6.70 86.93 0.58 2.16 16 15 C -0.12 -1.38 6.53 32.06 0.21 -1.17 16 16 C 0.09 1.19 3.24 46.11 0.15 1.34 16 17 H 0.08 0.88 7.89 -2.39 -0.02 0.86 16 18 N -0.68 -8.62 6.28 -489.43 -3.07 -11.69 16 19 C 0.11 1.30 5.85 85.56 0.50 1.80 16 20 C 0.11 1.53 6.29 42.56 0.27 1.80 16 21 C -0.12 -1.50 9.72 22.35 0.22 -1.28 16 22 C -0.11 -1.27 10.16 22.51 0.23 -1.04 16 23 C 0.03 0.47 7.35 22.47 0.17 0.63 16 24 F -0.14 -2.01 17.28 44.97 0.78 -1.24 16 25 C 0.07 0.92 11.17 84.73 0.95 1.87 16 26 N -0.47 -7.04 10.27 -183.70 -1.89 -8.92 16 27 C 0.11 2.57 6.55 86.73 0.57 3.14 16 28 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 29 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 30 H 0.11 3.94 7.85 -2.39 -0.02 3.92 16 31 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.08 1.47 7.48 -2.38 -0.02 1.45 16 33 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.36 4.05 8.49 -89.70 -0.76 3.29 16 36 H 0.10 1.07 8.02 -2.39 -0.02 1.05 16 37 H 0.06 0.65 8.09 -2.38 -0.02 0.64 16 38 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 39 H 0.17 1.25 8.06 -2.91 -0.02 1.22 16 40 H 0.19 1.52 8.06 -2.91 -0.02 1.49 16 41 H 0.06 1.63 8.03 -2.39 -0.02 1.61 16 42 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -79.44 376.45 0.51 -78.93 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.29 Total: 13.22 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: 6.00 Total: -2.71 kcal Atomic # 7 Polarization: -88.80 SS G_CDS: -7.37 Total: -96.17 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -0.05 Total: -27.76 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.78 Total: -1.24 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.75 kcal Total: -79.44 0.51 -78.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181098044.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.377 kcal (2) G-P(sol) polarization free energy of solvation -79.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds