Wall clock time and date at job start Tue Mar 31 2020 22:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86802 * 119.99972 * 2 1 4 4 H 1.48501 * 109.47249 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47131 * 300.00372 * 3 2 1 6 6 H 1.48502 * 109.46955 * 60.00538 * 3 2 1 7 7 C 1.38947 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00394 * 179.97438 * 7 2 1 9 9 N 1.37100 * 120.00094 * 359.97438 * 7 2 1 10 10 C 1.34771 * 120.00186 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99853 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99951 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47238 * 179.97438 * 12 10 9 14 14 C 1.48534 * 111.00336 * 52.60164 * 13 12 10 15 15 C 1.54933 * 103.22918 * 159.72037 * 14 13 12 16 16 H 1.09002 * 110.72089 * 80.94774 * 15 14 13 17 17 O 1.42899 * 110.72376 * 204.22676 * 15 14 13 18 18 C 1.54591 * 102.92615 * 322.58639 * 15 14 13 19 19 H 1.08993 * 110.31013 * 263.04721 * 18 15 14 20 20 N 1.46498 * 110.30733 * 140.87026 * 18 15 14 21 21 C 1.34777 * 119.99428 * 157.83730 * 20 18 15 22 22 O 1.21285 * 120.00520 * 359.97438 * 21 20 18 23 23 C 1.50709 * 119.99685 * 180.02562 * 21 20 18 24 24 C 1.53001 * 109.47058 * 179.97438 * 23 21 20 25 25 F 1.39908 * 109.46788 * 60.00021 * 24 23 21 26 26 F 1.39901 * 109.47098 * 179.97438 * 24 23 21 27 27 F 1.39898 * 109.47181 * 300.00529 * 24 23 21 28 28 C 1.47906 * 111.00463 * 169.99874 * 13 12 10 29 29 H 0.97006 * 120.00198 * 359.97438 * 1 2 3 30 30 H 0.96993 * 119.99649 * 0.02562 * 9 7 2 31 31 H 1.08996 * 109.47462 * 60.00142 * 12 10 9 32 32 H 1.09001 * 109.47050 * 299.99737 * 12 10 9 33 33 H 1.09004 * 110.66939 * 278.16097 * 14 13 12 34 34 H 1.09002 * 110.66619 * 41.28493 * 14 13 12 35 35 H 0.96705 * 114.00442 * 293.50780 * 17 15 14 36 36 H 0.96998 * 120.00672 * 337.82917 * 20 18 15 37 37 H 1.08998 * 109.47061 * 299.99544 * 23 21 20 38 38 H 1.09001 * 109.46697 * 59.99795 * 23 21 20 39 39 H 1.09003 * 109.91125 * 333.50977 * 28 13 12 40 40 H 1.08999 * 109.91852 * 94.80110 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8892 2.3965 -1.2124 6 1 1.8894 2.3964 1.2126 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5577 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 7 2.1984 -5.9794 -0.0016 14 6 3.1845 -5.8373 1.1000 15 6 3.7283 -7.2772 1.2770 16 1 4.4918 -7.4956 0.5303 17 8 4.2420 -7.4650 2.5972 18 6 2.4738 -8.1512 1.0486 19 1 2.0243 -8.4245 2.0032 20 7 2.8232 -9.3530 0.2871 21 6 2.0342 -10.4438 0.3504 22 8 1.0352 -10.4307 1.0381 23 6 2.3938 -11.6803 -0.4326 24 6 1.3421 -12.7638 -0.1862 25 9 0.0884 -12.2990 -0.5983 26 9 1.6756 -13.9114 -0.9135 27 9 1.3000 -13.0713 1.1779 28 6 1.5093 -7.2661 0.2376 29 1 -0.4851 0.8401 0.0004 30 1 0.3535 -2.3906 -0.0005 31 1 0.6175 -4.9205 -0.8913 32 1 0.6168 -4.9208 0.8886 33 1 3.9856 -5.1559 0.8138 34 1 2.6954 -5.4959 2.0124 35 1 5.0297 -6.9388 2.7914 36 1 3.6222 -9.3636 -0.2627 37 1 2.4269 -11.4406 -1.4954 38 1 3.3704 -12.0425 -0.1112 39 1 0.5942 -7.0972 0.8052 40 1 1.2766 -7.7451 -0.7134 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191564050.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:41 Heat of formation + Delta-G solvation = -257.243947 kcal Electronic energy + Delta-G solvation = -29595.974019 eV Core-core repulsion = 24610.219464 eV Total energy + Delta-G solvation = -4985.754555 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.36136 -47.90797 -47.76937 -40.51040 -39.18410 -37.87956 -35.85641 -34.71521 -33.90974 -32.42457 -31.37551 -30.08247 -28.07738 -26.57518 -24.65248 -24.03943 -21.79371 -21.25775 -20.63592 -19.36829 -19.05808 -18.83404 -17.98786 -17.97749 -17.62932 -16.97563 -16.40149 -15.97095 -15.78019 -15.11006 -14.87861 -14.81608 -14.68169 -14.56990 -14.22192 -14.20023 -13.95766 -13.94478 -13.89268 -13.83570 -13.36299 -13.15416 -13.04219 -12.56853 -12.53185 -12.29650 -12.16700 -11.79492 -11.60813 -11.39585 -11.07829 -10.71997 -10.51539 -10.38743 -10.29575 -10.06925 -9.57352 -9.50449 -8.51250 -8.12997 -8.00760 -6.48731 -3.90083 2.09741 2.14907 2.69051 3.11219 3.22578 3.28905 3.34650 3.67548 3.71819 3.74356 3.80625 4.07602 4.28290 4.29648 4.46232 4.58710 4.61543 4.78410 4.90560 5.05515 5.18210 5.27051 5.31470 5.58331 5.70704 5.71855 5.81745 6.02693 6.13399 6.17018 6.40805 6.92382 7.02485 7.08631 7.48371 7.49068 7.70290 7.97977 8.52692 9.10006 9.45431 9.95892 10.68757 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.027485 B = 0.002049 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.508938 B =13664.934683 C =14250.598732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.300 4.300 8 H 0.104 0.896 9 N -0.559 5.559 10 C 0.441 3.559 11 O -0.584 6.584 12 C 0.035 3.965 13 N -0.490 5.490 14 C 0.010 3.990 15 C 0.091 3.909 16 H 0.076 0.924 17 O -0.562 6.562 18 C 0.143 3.857 19 H 0.107 0.893 20 N -0.709 5.709 21 C 0.518 3.482 22 O -0.517 6.517 23 C -0.196 4.196 24 C 0.472 3.528 25 F -0.172 7.172 26 F -0.183 7.183 27 F -0.173 7.173 28 C 0.026 3.974 29 H 0.272 0.728 30 H 0.393 0.607 31 H 0.093 0.907 32 H 0.052 0.948 33 H 0.126 0.874 34 H 0.050 0.950 35 H 0.385 0.615 36 H 0.405 0.595 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.057 0.943 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.492 -22.664 -1.041 23.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.430 4.430 8 H 0.122 0.878 9 N -0.195 5.195 10 C 0.227 3.773 11 O -0.470 6.470 12 C -0.097 4.097 13 N -0.216 5.216 14 C -0.118 4.118 15 C 0.031 3.969 16 H 0.094 0.906 17 O -0.368 6.368 18 C 0.038 3.962 19 H 0.125 0.875 20 N -0.361 5.361 21 C 0.302 3.698 22 O -0.392 6.392 23 C -0.237 4.237 24 C 0.418 3.582 25 F -0.154 7.154 26 F -0.165 7.165 27 F -0.154 7.154 28 C -0.104 4.104 29 H 0.082 0.918 30 H 0.226 0.774 31 H 0.111 0.889 32 H 0.070 0.930 33 H 0.144 0.856 34 H 0.069 0.931 35 H 0.234 0.766 36 H 0.240 0.760 37 H 0.159 0.841 38 H 0.157 0.843 39 H 0.075 0.925 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.152 -22.901 -0.990 23.495 hybrid contribution -0.063 1.116 0.362 1.175 sum 5.089 -21.786 -0.628 22.381 Atomic orbital electron populations 1.69617 1.05985 1.28222 1.50156 1.25293 0.95647 0.99840 0.97145 0.85788 0.79661 0.81041 0.77770 1.19202 1.20688 1.20718 1.19742 0.93380 0.82105 1.47768 0.87780 1.41862 1.09293 1.04603 1.63709 1.19643 0.88300 0.84617 0.84751 1.90411 1.13704 1.86732 1.56134 1.22139 0.94500 0.91010 1.02007 1.64600 1.13459 1.00315 1.43181 1.24147 0.98650 0.95822 0.93192 1.23008 0.94477 0.94771 0.84648 0.90577 1.86459 1.49307 1.69910 1.31112 1.21775 0.95043 0.83698 0.95675 0.87504 1.45865 1.28100 1.12945 1.49219 1.19763 0.83958 0.83923 0.82138 1.90853 1.25536 1.82849 1.40004 1.22975 1.00793 0.93684 1.06277 1.19693 0.82236 0.81736 0.74563 1.93240 1.43786 1.88310 1.90015 1.93204 1.92366 1.53064 1.77855 1.93232 1.96591 1.93658 1.31955 1.23366 0.96057 0.90902 1.00042 0.91795 0.77372 0.88894 0.92960 0.85612 0.93148 0.76648 0.75999 0.84150 0.84295 0.92454 0.89625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.03 13.05 55.50 0.72 -23.30 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.52 29.55 -169.99 -5.02 15.50 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.30 -8.11 9.68 -14.93 -0.14 -8.26 16 8 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 9 N -0.56 -13.72 5.29 -10.97 -0.06 -13.78 16 10 C 0.44 9.91 7.49 -10.99 -0.08 9.82 16 11 O -0.58 -14.54 13.10 5.55 0.07 -14.47 16 12 C 0.04 0.61 5.52 -4.98 -0.03 0.58 16 13 N -0.49 -7.60 5.26 -231.89 -1.22 -8.82 16 14 C 0.01 0.15 5.02 -1.90 -0.01 0.14 16 15 C 0.09 1.04 4.14 -24.88 -0.10 0.94 16 16 H 0.08 0.74 7.74 -51.93 -0.40 0.34 16 17 O -0.56 -6.29 13.40 -35.23 -0.47 -6.76 16 18 C 0.14 1.66 3.06 -66.58 -0.20 1.46 16 19 H 0.11 1.46 7.58 -51.93 -0.39 1.07 16 20 N -0.71 -6.07 5.03 -52.49 -0.26 -6.33 16 21 C 0.52 4.99 7.59 -10.98 -0.08 4.91 16 22 O -0.52 -7.33 14.53 5.55 0.08 -7.25 16 23 C -0.20 -1.09 5.75 -27.88 -0.16 -1.25 16 24 C 0.47 4.16 2.89 37.16 0.11 4.27 16 25 F -0.17 -1.92 16.40 2.25 0.04 -1.88 16 26 F -0.18 -1.49 17.32 2.25 0.04 -1.45 16 27 F -0.17 -1.91 16.40 2.25 0.04 -1.88 16 28 C 0.03 0.33 6.49 -2.75 -0.02 0.31 16 29 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 31 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 32 H 0.05 0.84 7.81 -51.93 -0.41 0.44 16 33 H 0.13 2.23 5.97 -51.93 -0.31 1.92 16 34 H 0.05 0.83 8.02 -51.93 -0.42 0.41 16 35 H 0.39 2.86 9.12 45.56 0.42 3.28 16 36 H 0.40 2.21 8.35 -40.82 -0.34 1.87 16 37 H 0.14 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.14 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.76 7.57 -51.93 -0.39 0.37 16 40 H 0.09 1.05 7.92 -51.93 -0.41 0.63 16 LS Contribution 351.65 15.07 5.30 5.30 Total: -1.00 -33.96 351.65 -5.33 -39.28 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -3.76 Total: 12.42 kcal Atomic # 6 Polarization: 14.25 SS G_CDS: -0.82 Total: 13.42 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: -0.82 Total: -52.24 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.32 Total: -28.48 kcal Atomic # 9 Polarization: -5.32 SS G_CDS: 0.11 Total: -5.20 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.96 -5.33 -39.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191564050.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -217.961 kcal (2) G-P(sol) polarization free energy of solvation -33.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -251.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -257.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds