Wall clock time and date at job start Tue Mar 31 2020 22:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86802 * 119.99972 * 2 1 4 4 H 1.48501 * 109.47249 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47131 * 300.00372 * 3 2 1 6 6 H 1.48502 * 109.46955 * 60.00538 * 3 2 1 7 7 C 1.38947 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00394 * 179.97438 * 7 2 1 9 9 N 1.37100 * 120.00094 * 359.97438 * 7 2 1 10 10 C 1.34771 * 120.00186 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99853 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99951 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47238 * 179.97438 * 12 10 9 14 14 C 1.48534 * 111.00336 * 52.60164 * 13 12 10 15 15 C 1.54933 * 103.22918 * 159.72037 * 14 13 12 16 16 H 1.09002 * 110.72089 * 80.94774 * 15 14 13 17 17 O 1.42899 * 110.72376 * 204.22676 * 15 14 13 18 18 C 1.54591 * 102.92615 * 322.58639 * 15 14 13 19 19 H 1.08993 * 110.31013 * 263.04721 * 18 15 14 20 20 N 1.46498 * 110.30733 * 140.87026 * 18 15 14 21 21 C 1.34777 * 119.99428 * 157.83730 * 20 18 15 22 22 O 1.21285 * 120.00520 * 359.97438 * 21 20 18 23 23 C 1.50709 * 119.99685 * 180.02562 * 21 20 18 24 24 C 1.53001 * 109.47058 * 179.97438 * 23 21 20 25 25 F 1.39908 * 109.46788 * 60.00021 * 24 23 21 26 26 F 1.39901 * 109.47098 * 179.97438 * 24 23 21 27 27 F 1.39898 * 109.47181 * 300.00529 * 24 23 21 28 28 C 1.47906 * 111.00463 * 169.99874 * 13 12 10 29 29 H 0.97006 * 120.00198 * 359.97438 * 1 2 3 30 30 H 0.96993 * 119.99649 * 0.02562 * 9 7 2 31 31 H 1.08996 * 109.47462 * 60.00142 * 12 10 9 32 32 H 1.09001 * 109.47050 * 299.99737 * 12 10 9 33 33 H 1.09004 * 110.66939 * 278.16097 * 14 13 12 34 34 H 1.09002 * 110.66619 * 41.28493 * 14 13 12 35 35 H 0.96705 * 114.00442 * 293.50780 * 17 15 14 36 36 H 0.96998 * 120.00672 * 337.82917 * 20 18 15 37 37 H 1.08998 * 109.47061 * 299.99544 * 23 21 20 38 38 H 1.09001 * 109.46697 * 59.99795 * 23 21 20 39 39 H 1.09003 * 109.91125 * 333.50977 * 28 13 12 40 40 H 1.08999 * 109.91852 * 94.80110 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8892 2.3965 -1.2124 6 1 1.8894 2.3964 1.2126 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5577 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 7 2.1984 -5.9794 -0.0016 14 6 3.1845 -5.8373 1.1000 15 6 3.7283 -7.2772 1.2770 16 1 4.4918 -7.4956 0.5303 17 8 4.2420 -7.4650 2.5972 18 6 2.4738 -8.1512 1.0486 19 1 2.0243 -8.4245 2.0032 20 7 2.8232 -9.3530 0.2871 21 6 2.0342 -10.4438 0.3504 22 8 1.0352 -10.4307 1.0381 23 6 2.3938 -11.6803 -0.4326 24 6 1.3421 -12.7638 -0.1862 25 9 0.0884 -12.2990 -0.5983 26 9 1.6756 -13.9114 -0.9135 27 9 1.3000 -13.0713 1.1779 28 6 1.5093 -7.2661 0.2376 29 1 -0.4851 0.8401 0.0004 30 1 0.3535 -2.3906 -0.0005 31 1 0.6175 -4.9205 -0.8913 32 1 0.6168 -4.9208 0.8886 33 1 3.9856 -5.1559 0.8138 34 1 2.6954 -5.4959 2.0124 35 1 5.0297 -6.9388 2.7914 36 1 3.6222 -9.3636 -0.2627 37 1 2.4269 -11.4406 -1.4954 38 1 3.3704 -12.0425 -0.1112 39 1 0.5942 -7.0972 0.8052 40 1 1.2766 -7.7451 -0.7134 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191564050.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:40 Heat of formation + Delta-G solvation = -287.819437 kcal Electronic energy + Delta-G solvation = -29597.299871 eV Core-core repulsion = 24610.219464 eV Total energy + Delta-G solvation = -4987.080408 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.05363 -48.57863 -48.52699 -41.45723 -40.46146 -39.31203 -36.92555 -36.02497 -35.44785 -33.34384 -33.05395 -31.22071 -29.15722 -28.05016 -26.12805 -25.00166 -22.90814 -22.13694 -21.56800 -21.08760 -19.91728 -19.73850 -19.52671 -18.74976 -18.55027 -17.81832 -17.69804 -17.15332 -16.72742 -16.48214 -16.28590 -16.09096 -15.68402 -15.44837 -15.41668 -15.27362 -14.94755 -14.93697 -14.70322 -14.66022 -14.50972 -14.36681 -13.96517 -13.83991 -13.54832 -13.49834 -13.28804 -13.05366 -12.94835 -12.86167 -12.60745 -12.40973 -12.11506 -11.79162 -11.48408 -11.35801 -11.00121 -10.40010 -10.15196 -10.02190 -9.46431 -8.47719 -5.96501 1.36283 1.39671 1.42255 1.51277 1.56109 2.00972 2.03162 2.26908 2.63561 2.74972 3.04926 3.09116 3.14582 3.19093 3.28861 3.55704 3.69714 3.88303 3.98896 4.18786 4.21008 4.26747 4.29613 4.33139 4.41702 4.49497 4.62189 4.74563 4.82786 5.10600 5.31351 5.40783 5.70511 5.79994 6.02563 6.33727 6.57763 6.76475 7.04628 7.11034 7.53335 8.07463 8.69907 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.027485 B = 0.002049 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.508938 B =13664.934683 C =14250.598732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.015 4.015 3 Si 0.994 3.006 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.329 4.329 8 H 0.083 0.917 9 N -0.573 5.573 10 C 0.442 3.558 11 O -0.610 6.610 12 C 0.044 3.956 13 N -0.495 5.495 14 C 0.010 3.990 15 C 0.108 3.892 16 H 0.103 0.897 17 O -0.572 6.572 18 C 0.150 3.850 19 H 0.085 0.915 20 N -0.695 5.695 21 C 0.515 3.485 22 O -0.569 6.569 23 C -0.180 4.180 24 C 0.463 3.537 25 F -0.191 7.191 26 F -0.179 7.179 27 F -0.191 7.191 28 C 0.030 3.970 29 H 0.277 0.723 30 H 0.395 0.605 31 H 0.112 0.888 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.030 0.970 35 H 0.401 0.599 36 H 0.424 0.576 37 H 0.178 0.822 38 H 0.178 0.822 39 H 0.051 0.949 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.667 -23.757 -1.988 24.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.215 4.215 3 Si 0.818 3.182 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.459 4.459 8 H 0.101 0.899 9 N -0.209 5.209 10 C 0.229 3.771 11 O -0.496 6.496 12 C -0.088 4.088 13 N -0.221 5.221 14 C -0.118 4.118 15 C 0.048 3.952 16 H 0.121 0.879 17 O -0.380 6.380 18 C 0.043 3.957 19 H 0.103 0.897 20 N -0.348 5.348 21 C 0.301 3.699 22 O -0.447 6.447 23 C -0.220 4.220 24 C 0.409 3.591 25 F -0.172 7.172 26 F -0.160 7.160 27 F -0.173 7.173 28 C -0.099 4.099 29 H 0.087 0.913 30 H 0.229 0.771 31 H 0.130 0.870 32 H 0.083 0.917 33 H 0.117 0.883 34 H 0.049 0.951 35 H 0.252 0.748 36 H 0.263 0.737 37 H 0.196 0.804 38 H 0.195 0.805 39 H 0.070 0.930 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.363 -24.015 -1.956 24.920 hybrid contribution -0.408 1.368 0.677 1.580 sum 5.955 -22.647 -1.280 23.451 Atomic orbital electron populations 1.69684 1.06952 1.29256 1.50386 1.26077 0.96525 1.02575 0.96327 0.84851 0.78154 0.77029 0.78192 1.19458 1.19749 1.19835 1.19711 0.92775 0.83739 1.49648 0.89864 1.41944 1.09353 1.04791 1.64860 1.20541 0.88295 0.85737 0.82502 1.90408 1.15171 1.87496 1.56539 1.22045 0.94390 0.88830 1.03486 1.64594 1.13405 1.00662 1.43430 1.24004 0.97729 0.98011 0.92089 1.22839 0.94915 0.91863 0.85562 0.87918 1.86437 1.50366 1.70197 1.30998 1.21466 0.94644 0.84583 0.94965 0.89655 1.45666 1.28641 1.11707 1.48785 1.20426 0.83036 0.84907 0.81534 1.90844 1.27800 1.83786 1.42281 1.23037 1.00910 0.90286 1.07782 1.20221 0.82409 0.82729 0.73743 1.93202 1.45382 1.88536 1.90098 1.93210 1.92209 1.53048 1.77579 1.93196 1.96673 1.93896 1.33497 1.23384 0.95991 0.89731 1.00818 0.91337 0.77126 0.87007 0.91729 0.88349 0.95122 0.74777 0.73744 0.80428 0.80482 0.93035 0.88380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.38 13.05 21.66 0.28 -49.10 16 2 C -0.02 -0.81 5.50 84.93 0.47 -0.34 16 3 Si 0.99 42.08 29.55 68.60 2.03 44.11 16 4 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 6 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 7 C -0.33 -18.18 9.68 84.04 0.81 -17.37 16 8 H 0.08 4.86 7.16 -2.91 -0.02 4.83 16 9 N -0.57 -28.71 5.29 -307.00 -1.62 -30.34 16 10 C 0.44 20.14 7.49 87.66 0.66 20.79 16 11 O -0.61 -31.02 13.10 -3.06 -0.04 -31.06 16 12 C 0.04 1.50 5.52 85.56 0.47 1.97 16 13 N -0.50 -14.90 5.26 -887.56 -4.67 -19.57 16 14 C 0.01 0.31 5.02 86.65 0.44 0.74 16 15 C 0.11 2.29 4.14 31.80 0.13 2.42 16 16 H 0.10 1.66 7.74 -2.39 -0.02 1.64 16 17 O -0.57 -11.89 13.40 -148.98 -2.00 -13.89 16 18 C 0.15 3.23 3.06 45.87 0.14 3.37 16 19 H 0.09 2.29 7.58 -2.39 -0.02 2.27 16 20 N -0.69 -9.85 5.03 -438.37 -2.20 -12.06 16 21 C 0.51 8.69 7.59 87.66 0.67 9.36 16 22 O -0.57 -15.70 14.53 -3.05 -0.04 -15.75 16 23 C -0.18 -1.35 5.75 29.85 0.17 -1.18 16 24 C 0.46 7.33 2.89 71.98 0.21 7.54 16 25 F -0.19 -4.09 16.40 44.97 0.74 -3.36 16 26 F -0.18 -2.52 17.32 44.97 0.78 -1.74 16 27 F -0.19 -4.08 16.40 44.97 0.74 -3.34 16 28 C 0.03 0.72 6.49 86.45 0.56 1.28 16 29 H 0.28 13.89 8.31 -92.70 -0.77 13.12 16 30 H 0.40 19.09 7.90 -92.71 -0.73 18.36 16 31 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 32 H 0.06 2.06 7.81 -2.39 -0.02 2.04 16 33 H 0.10 3.54 5.97 -2.38 -0.01 3.53 16 34 H 0.03 1.03 8.02 -2.39 -0.02 1.01 16 35 H 0.40 5.34 9.12 -74.05 -0.68 4.66 16 36 H 0.42 2.84 8.35 -92.71 -0.77 2.07 16 37 H 0.18 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.18 0.01 8.14 -2.39 -0.02 -0.01 16 39 H 0.05 1.33 7.57 -2.39 -0.02 1.31 16 40 H 0.10 2.16 7.92 -2.39 -0.02 2.14 16 Total: -1.00 -76.28 351.65 -2.32 -78.60 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: -1.04 Total: 28.89 kcal Atomic # 6 Polarization: 23.87 SS G_CDS: 4.72 Total: 28.59 kcal Atomic # 7 Polarization: -102.85 SS G_CDS: -8.21 Total: -111.06 kcal Atomic # 8 Polarization: -58.62 SS G_CDS: -2.08 Total: -60.70 kcal Atomic # 9 Polarization: -10.69 SS G_CDS: 2.25 Total: -8.44 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -76.28 -2.32 -78.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191564050.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -209.217 kcal (2) G-P(sol) polarization free energy of solvation -76.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -285.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -287.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds