Wall clock time and date at job start Tue Mar 31 2020 22:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86796 * 120.00133 * 2 1 4 4 H 1.48500 * 109.47127 * 270.00254 * 3 2 1 5 5 H 1.48498 * 109.46950 * 30.00301 * 3 2 1 6 6 H 1.48498 * 109.47138 * 150.00204 * 3 2 1 7 7 C 1.38945 * 119.99628 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99679 * 179.97438 * 7 2 1 9 9 N 1.37100 * 120.00328 * 359.97438 * 7 2 1 10 10 C 1.34782 * 119.99800 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99994 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99451 * 180.27319 * 10 9 7 13 13 N 1.46900 * 109.46829 * 172.85197 * 12 10 9 14 14 C 1.46269 * 111.00226 * 64.17534 * 13 12 10 15 15 C 1.47541 * 114.37503 * 148.54992 * 14 13 12 16 16 C 1.54946 * 109.73136 * 62.22400 * 15 14 13 17 17 N 1.44672 * 109.52523 * 290.51759 * 16 15 14 18 18 C 1.34774 * 118.55027 * 269.05957 * 17 16 15 19 19 O 1.21620 * 120.00036 * 186.42052 * 18 17 16 20 20 C 1.47176 * 120.00036 * 6.41805 * 18 17 16 21 21 C 1.38241 * 128.47735 * 187.49778 * 20 18 17 22 22 N 1.31236 * 111.89031 * 179.81199 * 21 20 18 23 23 N 1.27341 * 120.03621 * 0.54356 * 22 21 20 24 24 S 1.56635 * 109.74010 * 359.68458 * 23 22 21 25 25 C 1.47787 * 122.90274 * 89.07780 * 17 16 15 26 26 C 1.44765 * 111.00238 * 300.68782 * 13 12 10 27 27 H 0.97003 * 120.00279 * 359.97438 * 1 2 3 28 28 H 0.96999 * 119.99719 * 0.02562 * 9 7 2 29 29 H 1.09003 * 109.47385 * 292.85002 * 12 10 9 30 30 H 1.08999 * 109.46848 * 52.85521 * 12 10 9 31 31 H 1.08994 * 108.50217 * 269.82559 * 14 13 12 32 32 H 1.09002 * 108.49767 * 27.44334 * 14 13 12 33 33 H 1.09003 * 109.42299 * 182.30359 * 15 14 13 34 34 H 1.08993 * 109.42801 * 302.19412 * 15 14 13 35 35 H 1.08997 * 109.46303 * 50.53902 * 16 15 14 36 36 H 1.09004 * 109.45778 * 170.51259 * 16 15 14 37 37 H 1.08005 * 124.05459 * 359.97438 * 21 20 18 38 38 H 1.09003 * 109.06090 * 78.64809 * 25 17 16 39 39 H 1.08998 * 109.05919 * 197.57637 * 25 17 16 40 40 H 1.09002 * 109.43241 * 337.92272 * 26 13 12 41 41 H 1.08997 * 109.43977 * 97.78827 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0016 11 8 3.2101 -3.5579 -0.0021 12 6 1.2436 -4.8629 -0.0078 13 7 2.1895 -5.9736 -0.1801 14 6 3.1062 -6.0626 0.9561 15 6 3.5562 -7.4322 1.2697 16 6 4.3453 -8.0115 0.0686 17 7 3.4400 -8.2526 -1.0337 18 6 2.8562 -9.4631 -1.1348 19 8 2.1839 -9.7343 -2.1113 20 6 3.0323 -10.4568 -0.0636 21 6 2.6393 -11.7821 -0.0466 22 7 2.9650 -12.3746 1.0781 23 7 3.5617 -11.7208 1.9936 24 16 3.7935 -10.2446 1.5240 25 6 3.1273 -7.2302 -2.0541 26 6 2.9250 -5.8412 -1.4199 27 1 -0.4851 0.8400 0.0004 28 1 0.3533 -2.3906 -0.0005 29 1 0.7131 -4.9807 0.9371 30 1 0.5273 -4.8649 -0.8294 31 1 3.9826 -5.4509 0.7422 32 1 2.6077 -5.6548 1.8355 33 1 4.1995 -7.4100 2.1494 34 1 2.6893 -8.0616 1.4704 35 1 5.1115 -7.3001 -0.2395 36 1 4.8174 -8.9490 0.3625 37 1 2.1280 -12.2718 -0.8623 38 1 3.9479 -7.1788 -2.7696 39 1 2.2164 -7.5181 -2.5789 40 1 2.3656 -5.2066 -2.1074 41 1 3.8962 -5.3892 -1.2190 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194970832.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:38 Heat of formation + Delta-G solvation = 33.155637 kcal Electronic energy + Delta-G solvation = -27574.740924 eV Core-core repulsion = 23618.481402 eV Total energy + Delta-G solvation = -3956.259522 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.02897 -40.46074 -39.06353 -37.31712 -35.25569 -33.88526 -33.20312 -32.09350 -31.41191 -29.67518 -27.72132 -26.67923 -25.85982 -24.24998 -23.65322 -21.58318 -20.89993 -19.89086 -19.32379 -19.06959 -17.97700 -17.41607 -16.92803 -16.14974 -16.07710 -15.63209 -15.49019 -15.25380 -14.84796 -14.56084 -14.36957 -14.05876 -13.87870 -13.46322 -13.41372 -13.01579 -12.81849 -12.57512 -12.22579 -12.19958 -11.76612 -11.63163 -11.57241 -11.25688 -11.04956 -10.90943 -10.65483 -10.49491 -10.34721 -10.27883 -10.26333 -10.13429 -9.79943 -9.61689 -9.25051 -8.83007 -8.10745 -7.72909 -6.54191 -3.96009 -0.48819 0.56010 1.30259 1.76498 2.64154 2.80178 3.07656 3.18213 3.22886 3.72842 3.78161 4.00310 4.07465 4.23131 4.46834 4.50191 4.65701 4.85666 5.02625 5.12336 5.17824 5.19408 5.33451 5.37504 5.52704 5.57652 5.68921 5.79932 5.88722 5.94063 6.03411 6.09550 6.25842 6.32268 6.42572 7.04375 7.19397 7.33167 7.42368 7.44170 7.81343 7.91041 8.45178 9.03499 9.39410 9.88614 10.62335 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.028224 B = 0.002530 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.811870 B =11063.330078 C =11391.971754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.930 3.070 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.303 4.303 8 H 0.103 0.897 9 N -0.555 5.555 10 C 0.404 3.596 11 O -0.599 6.599 12 C 0.044 3.956 13 N -0.509 5.509 14 C 0.053 3.947 15 C -0.139 4.139 16 C 0.097 3.903 17 N -0.578 5.578 18 C 0.598 3.402 19 O -0.523 6.523 20 C -0.291 4.291 21 C 0.068 3.932 22 N -0.257 5.257 23 N -0.292 5.292 24 S 0.456 5.544 25 C 0.124 3.876 26 C 0.045 3.955 27 H 0.273 0.727 28 H 0.393 0.607 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.213 0.787 38 H 0.069 0.931 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.041 -16.894 0.781 17.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.433 4.433 8 H 0.120 0.880 9 N -0.190 5.190 10 C 0.189 3.811 11 O -0.486 6.486 12 C -0.087 4.087 13 N -0.231 5.231 14 C -0.075 4.075 15 C -0.179 4.179 16 C -0.029 4.029 17 N -0.310 5.310 18 C 0.383 3.617 19 O -0.400 6.400 20 C -0.432 4.432 21 C -0.099 4.099 22 N -0.121 5.121 23 N -0.272 5.272 24 S 0.593 5.407 25 C 0.002 3.998 26 C -0.084 4.084 27 H 0.083 0.917 28 H 0.227 0.773 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.117 0.883 36 H 0.086 0.914 37 H 0.229 0.771 38 H 0.087 0.913 39 H 0.111 0.889 40 H 0.098 0.902 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.808 -17.565 2.072 18.952 hybrid contribution -0.514 1.647 -1.192 2.097 sum 6.294 -15.919 0.880 17.140 Atomic orbital electron populations 1.69606 1.05989 1.28417 1.49727 1.25298 0.95625 0.99875 0.96972 0.85863 0.79237 0.80760 0.78473 1.20316 1.20821 1.19424 1.19695 0.93337 0.82329 1.47963 0.87958 1.42023 1.09341 1.04919 1.62704 1.20996 0.88866 0.85947 0.85247 1.90471 1.13759 1.87156 1.57169 1.22224 0.95127 0.87908 1.03455 1.61288 1.18597 1.40922 1.02343 1.20943 0.97549 0.95085 0.93952 1.21657 1.00366 0.98507 0.97402 1.22008 0.92833 1.00614 0.87419 1.47394 1.44069 1.11866 1.27647 1.16587 0.79899 0.81065 0.84151 1.90824 1.40194 1.78131 1.30838 1.28113 1.12472 1.00180 1.02423 1.24455 0.98479 0.90181 0.96760 1.70853 1.11649 1.30548 0.99005 1.78565 1.16910 1.07543 1.24160 1.83320 1.41040 1.13511 1.02786 1.22174 1.01987 0.86983 0.88621 1.22354 0.99720 0.94050 0.92297 0.91673 0.77350 0.89283 0.89246 0.91221 0.91750 0.89263 0.91364 0.88314 0.91396 0.77064 0.91322 0.88907 0.90173 0.91387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.45 13.05 55.50 0.72 -22.73 16 2 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.15 29.55 -169.99 -5.02 15.12 16 4 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.30 -7.96 9.68 -14.93 -0.14 -8.11 16 8 H 0.10 2.82 7.16 -52.48 -0.38 2.44 16 9 N -0.55 -13.02 5.29 -10.96 -0.06 -13.08 16 10 C 0.40 8.41 7.07 -10.98 -0.08 8.33 16 11 O -0.60 -13.82 12.15 5.55 0.07 -13.75 16 12 C 0.04 0.70 5.48 -4.98 -0.03 0.67 16 13 N -0.51 -7.22 4.37 -241.04 -1.05 -8.27 16 14 C 0.05 0.69 3.97 -6.80 -0.03 0.67 16 15 C -0.14 -1.32 4.47 -28.34 -0.13 -1.45 16 16 C 0.10 0.87 4.96 -3.99 -0.02 0.85 16 17 N -0.58 -6.43 2.54 -173.58 -0.44 -6.87 16 18 C 0.60 7.36 7.60 -12.63 -0.10 7.27 16 19 O -0.52 -7.93 16.32 5.26 0.09 -7.84 16 20 C -0.29 -3.05 6.35 -35.95 -0.23 -3.28 16 21 C 0.07 0.70 11.56 -17.81 -0.21 0.49 16 22 N -0.26 -3.01 11.54 30.36 0.35 -2.66 16 23 N -0.29 -3.31 12.51 60.35 0.75 -2.56 16 24 S 0.46 3.94 16.71 -107.50 -1.80 2.15 16 25 C 0.12 1.45 6.42 -2.80 -0.02 1.44 16 26 C 0.05 0.62 4.30 -4.43 -0.02 0.60 16 27 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 28 H 0.39 8.95 7.90 -40.82 -0.32 8.63 16 29 H 0.09 1.30 7.92 -51.93 -0.41 0.89 16 30 H 0.09 1.31 8.07 -51.93 -0.42 0.90 16 31 H 0.07 1.07 5.79 -51.93 -0.30 0.77 16 32 H 0.06 0.90 7.54 -51.93 -0.39 0.51 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.67 6.72 -51.93 -0.35 0.32 16 35 H 0.10 0.82 8.09 -51.93 -0.42 0.40 16 36 H 0.07 0.49 4.51 -25.42 -0.11 0.38 16 37 H 0.21 1.71 8.06 -52.48 -0.42 1.29 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.09 1.19 7.05 -51.93 -0.37 0.82 16 40 H 0.08 1.18 7.47 -51.93 -0.39 0.79 16 41 H 0.07 1.04 6.25 -51.93 -0.32 0.72 16 LS Contribution 339.82 15.07 5.12 5.12 Total: -1.00 -31.22 339.82 -6.94 -38.16 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -4.59 Total: 9.18 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: -1.09 Total: 8.03 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: 0.28 Total: -56.16 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: 0.15 Total: -21.60 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.12 kcal Atomic # 16 Polarization: 3.94 SS G_CDS: -1.80 Total: 2.15 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.22 -6.94 -38.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194970832.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.314 kcal (2) G-P(sol) polarization free energy of solvation -31.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds