Wall clock time and date at job start Tue Mar 31 2020 22:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86796 * 120.00133 * 2 1 4 4 H 1.48500 * 109.47127 * 270.00254 * 3 2 1 5 5 H 1.48498 * 109.46950 * 30.00301 * 3 2 1 6 6 H 1.48498 * 109.47138 * 150.00204 * 3 2 1 7 7 C 1.38945 * 119.99628 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99679 * 179.97438 * 7 2 1 9 9 N 1.37100 * 120.00328 * 359.97438 * 7 2 1 10 10 C 1.34782 * 119.99800 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99994 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99451 * 180.27319 * 10 9 7 13 13 N 1.46900 * 109.46829 * 172.85197 * 12 10 9 14 14 C 1.46269 * 111.00226 * 64.17534 * 13 12 10 15 15 C 1.47541 * 114.37503 * 148.54992 * 14 13 12 16 16 C 1.54946 * 109.73136 * 62.22400 * 15 14 13 17 17 N 1.44672 * 109.52523 * 290.51759 * 16 15 14 18 18 C 1.34774 * 118.55027 * 269.05957 * 17 16 15 19 19 O 1.21620 * 120.00036 * 186.42052 * 18 17 16 20 20 C 1.47176 * 120.00036 * 6.41805 * 18 17 16 21 21 C 1.38241 * 128.47735 * 187.49778 * 20 18 17 22 22 N 1.31236 * 111.89031 * 179.81199 * 21 20 18 23 23 N 1.27341 * 120.03621 * 0.54356 * 22 21 20 24 24 S 1.56635 * 109.74010 * 359.68458 * 23 22 21 25 25 C 1.47787 * 122.90274 * 89.07780 * 17 16 15 26 26 C 1.44765 * 111.00238 * 300.68782 * 13 12 10 27 27 H 0.97003 * 120.00279 * 359.97438 * 1 2 3 28 28 H 0.96999 * 119.99719 * 0.02562 * 9 7 2 29 29 H 1.09003 * 109.47385 * 292.85002 * 12 10 9 30 30 H 1.08999 * 109.46848 * 52.85521 * 12 10 9 31 31 H 1.08994 * 108.50217 * 269.82559 * 14 13 12 32 32 H 1.09002 * 108.49767 * 27.44334 * 14 13 12 33 33 H 1.09003 * 109.42299 * 182.30359 * 15 14 13 34 34 H 1.08993 * 109.42801 * 302.19412 * 15 14 13 35 35 H 1.08997 * 109.46303 * 50.53902 * 16 15 14 36 36 H 1.09004 * 109.45778 * 170.51259 * 16 15 14 37 37 H 1.08005 * 124.05459 * 359.97438 * 21 20 18 38 38 H 1.09003 * 109.06090 * 78.64809 * 25 17 16 39 39 H 1.08998 * 109.05919 * 197.57637 * 25 17 16 40 40 H 1.09002 * 109.43241 * 337.92272 * 26 13 12 41 41 H 1.08997 * 109.43977 * 97.78827 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0016 11 8 3.2101 -3.5579 -0.0021 12 6 1.2436 -4.8629 -0.0078 13 7 2.1895 -5.9736 -0.1801 14 6 3.1062 -6.0626 0.9561 15 6 3.5562 -7.4322 1.2697 16 6 4.3453 -8.0115 0.0686 17 7 3.4400 -8.2526 -1.0337 18 6 2.8562 -9.4631 -1.1348 19 8 2.1839 -9.7343 -2.1113 20 6 3.0323 -10.4568 -0.0636 21 6 2.6393 -11.7821 -0.0466 22 7 2.9650 -12.3746 1.0781 23 7 3.5617 -11.7208 1.9936 24 16 3.7935 -10.2446 1.5240 25 6 3.1273 -7.2302 -2.0541 26 6 2.9250 -5.8412 -1.4199 27 1 -0.4851 0.8400 0.0004 28 1 0.3533 -2.3906 -0.0005 29 1 0.7131 -4.9807 0.9371 30 1 0.5273 -4.8649 -0.8294 31 1 3.9826 -5.4509 0.7422 32 1 2.6077 -5.6548 1.8355 33 1 4.1995 -7.4100 2.1494 34 1 2.6893 -8.0616 1.4704 35 1 5.1115 -7.3001 -0.2395 36 1 4.8174 -8.9490 0.3625 37 1 2.1280 -12.2718 -0.8623 38 1 3.9479 -7.1788 -2.7696 39 1 2.2164 -7.5181 -2.5789 40 1 2.3656 -5.2066 -2.1074 41 1 3.8962 -5.3892 -1.2190 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194970832.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:37 Heat of formation + Delta-G solvation = 9.286028 kcal Electronic energy + Delta-G solvation = -27575.775988 eV Core-core repulsion = 23618.481402 eV Total energy + Delta-G solvation = -3957.294586 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.87609 -41.46998 -40.45551 -38.60975 -36.49750 -35.62422 -34.12647 -33.31654 -32.92825 -30.82909 -28.72289 -27.77293 -27.12931 -25.76764 -24.57730 -22.46907 -22.12087 -20.95207 -20.64734 -19.99520 -19.79200 -18.32920 -17.88974 -17.69828 -17.01236 -16.73425 -16.54082 -16.50037 -16.07963 -15.90935 -15.58077 -15.49420 -15.23530 -14.64586 -14.49730 -13.98657 -13.86290 -13.74483 -13.49158 -13.34032 -13.02230 -12.94952 -12.73235 -12.60018 -12.42804 -12.21502 -12.14644 -11.99020 -11.71990 -11.44685 -11.26194 -11.09531 -10.93020 -10.84211 -10.56558 -10.00765 -9.75412 -9.13546 -8.46324 -5.95695 -1.29509 -0.20198 0.53074 0.94385 1.36180 1.41256 1.52789 1.74804 1.90450 2.03253 2.28357 2.89916 3.02028 3.20887 3.25406 3.37365 3.68929 3.72141 3.82074 4.03189 4.14037 4.23717 4.33916 4.43177 4.60588 4.62327 4.63546 4.71678 4.73337 4.77517 4.83941 5.04950 5.11236 5.33571 5.39308 5.41272 5.90847 6.04333 6.15881 6.17237 6.58174 6.65761 6.88854 7.11678 7.56206 8.09006 8.69432 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.028224 B = 0.002530 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.811870 B =11063.330078 C =11391.971754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.989 3.011 4 H -0.273 1.273 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.329 4.329 8 H 0.081 0.919 9 N -0.572 5.572 10 C 0.412 3.588 11 O -0.620 6.620 12 C 0.053 3.947 13 N -0.505 5.505 14 C 0.056 3.944 15 C -0.137 4.137 16 C 0.094 3.906 17 N -0.578 5.578 18 C 0.599 3.401 19 O -0.557 6.557 20 C -0.311 4.311 21 C 0.073 3.927 22 N -0.280 5.280 23 N -0.320 5.320 24 S 0.531 5.469 25 C 0.133 3.867 26 C 0.051 3.949 27 H 0.277 0.723 28 H 0.395 0.605 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.121 0.879 34 H 0.070 0.930 35 H 0.108 0.892 36 H 0.089 0.911 37 H 0.227 0.773 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.765 -17.588 1.450 18.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.813 3.187 4 H -0.198 1.198 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.459 4.459 8 H 0.099 0.901 9 N -0.208 5.208 10 C 0.198 3.802 11 O -0.507 6.507 12 C -0.079 4.079 13 N -0.226 5.226 14 C -0.072 4.072 15 C -0.177 4.177 16 C -0.031 4.031 17 N -0.308 5.308 18 C 0.385 3.615 19 O -0.437 6.437 20 C -0.452 4.452 21 C -0.095 4.095 22 N -0.143 5.143 23 N -0.300 5.300 24 S 0.668 5.332 25 C 0.011 3.989 26 C -0.078 4.078 27 H 0.086 0.914 28 H 0.228 0.772 29 H 0.125 0.875 30 H 0.122 0.878 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.139 0.861 34 H 0.088 0.912 35 H 0.126 0.874 36 H 0.106 0.894 37 H 0.243 0.757 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.550 -18.287 2.764 19.976 hybrid contribution -0.662 1.832 -1.365 2.379 sum 6.888 -16.454 1.399 17.892 Atomic orbital electron populations 1.69672 1.06877 1.29239 1.50371 1.26015 0.96447 1.02447 0.96428 0.84974 0.77958 0.77175 0.78550 1.19811 1.19894 1.19628 1.19640 0.92662 0.84037 1.49531 0.90115 1.42116 1.09379 1.05052 1.64297 1.21993 0.88836 0.86891 0.82464 1.90465 1.15180 1.87836 1.57246 1.22268 0.95261 0.85306 1.05027 1.61473 1.18890 1.39293 1.02969 1.20971 0.96155 0.97063 0.92996 1.21681 1.01101 0.96076 0.98819 1.22176 0.92568 1.01843 0.86539 1.47461 1.44012 1.11374 1.27982 1.16745 0.79284 0.81370 0.84052 1.90806 1.41747 1.78834 1.32306 1.27986 1.13912 1.00029 1.03281 1.24712 0.97850 0.90224 0.96703 1.70902 1.12631 1.31280 0.99453 1.78368 1.17570 1.09209 1.24843 1.82932 1.38536 1.11283 1.00454 1.22016 1.02373 0.85756 0.88802 1.22272 0.98457 0.95169 0.91916 0.91389 0.77162 0.87477 0.87774 0.93506 0.92603 0.86069 0.91181 0.87367 0.89378 0.75704 0.89526 0.89874 0.91410 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.28 13.05 21.66 0.28 -48.00 16 2 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 3 Si 0.99 41.33 29.55 68.60 2.03 43.36 16 4 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 6 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 7 C -0.33 -17.58 9.68 84.04 0.81 -16.76 16 8 H 0.08 4.58 7.16 -2.91 -0.02 4.56 16 9 N -0.57 -27.22 5.29 -306.97 -1.62 -28.85 16 10 C 0.41 17.18 7.07 87.66 0.62 17.80 16 11 O -0.62 -28.94 12.15 -3.07 -0.04 -28.98 16 12 C 0.05 1.62 5.48 85.56 0.47 2.09 16 13 N -0.50 -13.70 4.37 -916.52 -4.01 -17.71 16 14 C 0.06 1.39 3.97 84.72 0.34 1.73 16 15 C -0.14 -2.21 4.47 29.55 0.13 -2.08 16 16 C 0.09 1.42 4.96 87.39 0.43 1.85 16 17 N -0.58 -11.76 2.54 -821.32 -2.08 -13.84 16 18 C 0.60 13.80 7.60 86.59 0.66 14.46 16 19 O -0.56 -16.45 16.32 -4.10 -0.07 -16.52 16 20 C -0.31 -5.91 6.35 24.62 0.16 -5.75 16 21 C 0.07 1.39 11.56 84.78 0.98 2.37 16 22 N -0.28 -6.15 11.54 -57.87 -0.67 -6.82 16 23 N -0.32 -6.61 12.51 37.02 0.46 -6.15 16 24 S 0.53 7.65 16.71 -56.49 -0.94 6.71 16 25 C 0.13 2.95 6.42 86.48 0.55 3.51 16 26 C 0.05 1.39 4.30 87.05 0.37 1.76 16 27 H 0.28 13.67 8.31 -92.71 -0.77 12.90 16 28 H 0.39 18.22 7.90 -92.71 -0.73 17.49 16 29 H 0.11 2.95 7.92 -2.39 -0.02 2.94 16 30 H 0.10 2.94 8.07 -2.39 -0.02 2.92 16 31 H 0.05 1.40 5.79 -2.39 -0.01 1.39 16 32 H 0.06 1.48 7.54 -2.39 -0.02 1.46 16 33 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.07 1.15 6.72 -2.39 -0.02 1.14 16 35 H 0.11 1.52 8.09 -2.39 -0.02 1.50 16 36 H 0.09 0.97 4.51 -19.24 -0.09 0.88 16 37 H 0.23 3.38 8.06 -2.91 -0.02 3.36 16 38 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.08 2.07 7.05 -2.39 -0.02 2.05 16 40 H 0.07 1.99 7.47 -2.39 -0.02 1.97 16 41 H 0.05 1.58 6.25 -2.39 -0.01 1.57 16 Total: -1.00 -68.00 339.82 -0.37 -68.36 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: 0.29 Total: 27.68 kcal Atomic # 6 Polarization: 14.75 SS G_CDS: 5.99 Total: 20.75 kcal Atomic # 7 Polarization: -113.73 SS G_CDS: -7.63 Total: -121.37 kcal Atomic # 8 Polarization: -45.39 SS G_CDS: -0.10 Total: -45.49 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Atomic # 16 Polarization: 7.65 SS G_CDS: -0.94 Total: 6.71 kcal Total: -68.00 -0.37 -68.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194970832.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.650 kcal (2) G-P(sol) polarization free energy of solvation -67.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds