Wall clock time and date at job start Tue Mar 31 2020 22:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86799 * 120.00083 * 2 1 4 4 H 1.48499 * 109.47427 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47161 * 299.99877 * 3 2 1 6 6 H 1.48500 * 109.47482 * 59.99853 * 3 2 1 7 7 C 1.38955 * 119.99897 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99978 * 179.97438 * 7 2 1 9 9 N 1.37089 * 119.99915 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99796 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99955 * 359.97438 * 10 9 7 12 12 C 1.50705 * 120.00044 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46745 * 180.02562 * 12 10 9 14 14 C 1.46203 * 110.99417 * 197.07951 * 13 12 10 15 15 C 1.51165 * 109.04458 * 144.77594 * 14 13 12 16 16 C 1.53797 * 109.66087 * 92.49281 * 15 14 13 17 17 N 1.47614 * 111.25261 * 319.84979 * 16 15 14 18 18 C 1.34780 * 118.74801 * 138.34479 * 17 16 15 19 19 O 1.21566 * 119.99674 * 357.53870 * 18 17 16 20 20 C 1.47746 * 120.00187 * 177.53944 * 18 17 16 21 21 C 1.39354 * 124.11833 * 186.92022 * 20 18 17 22 22 N 1.30089 * 112.14660 * 179.97438 * 21 20 18 23 23 S 1.55924 * 108.75625 * 359.97438 * 22 21 20 24 24 N 1.31499 * 124.11471 * 6.61697 * 20 18 17 25 25 C 1.44881 * 122.50794 * 318.36628 * 17 16 15 26 26 C 1.41441 * 111.00499 * 66.04760 * 13 12 10 27 27 H 0.96998 * 120.00216 * 359.97438 * 1 2 3 28 28 H 0.96999 * 120.00606 * 359.97438 * 9 7 2 29 29 H 1.08997 * 109.47094 * 59.99443 * 12 10 9 30 30 H 1.09002 * 109.46664 * 299.99767 * 12 10 9 31 31 H 1.09005 * 109.53069 * 264.65790 * 14 13 12 32 32 H 1.08997 * 109.53299 * 24.80113 * 14 13 12 33 33 H 1.09004 * 109.49300 * 332.39802 * 15 14 13 34 34 H 1.08996 * 109.36657 * 212.51487 * 15 14 13 35 35 H 1.08997 * 109.11509 * 199.40909 * 16 15 14 36 36 H 1.08996 * 109.11380 * 80.28397 * 16 15 14 37 37 H 1.07997 * 123.92538 * 0.02562 * 21 20 18 38 38 H 1.08997 * 109.43904 * 209.77014 * 25 17 16 39 39 H 1.09004 * 109.43435 * 329.64185 * 25 17 16 40 40 H 1.09002 * 109.38829 * 71.51690 * 26 13 12 41 41 H 1.09002 * 109.38106 * 311.83732 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2437 -4.8630 0.0000 13 7 2.1984 -5.9795 0.0007 14 6 1.5475 -7.2255 -0.4007 15 6 2.5244 -8.0571 -1.2002 16 6 3.2739 -9.0186 -0.2626 17 7 3.6235 -8.3599 1.0113 18 6 3.4734 -9.0488 2.1599 19 8 3.0150 -10.1745 2.1380 20 6 3.8659 -8.4360 3.4457 21 6 3.8788 -9.1140 4.6631 22 7 4.2630 -8.3518 5.6449 23 16 4.5744 -6.9307 5.0841 24 7 4.2512 -7.1859 3.5797 25 6 4.1213 -7.0007 1.0740 26 6 2.9344 -6.0164 1.2080 27 1 -0.4850 0.8400 0.0004 28 1 0.3533 -2.3907 0.0005 29 1 0.6174 -4.9205 -0.8902 30 1 0.6168 -4.9209 0.8897 31 1 1.2391 -7.7779 0.4870 32 1 0.6733 -6.9998 -1.0113 33 1 3.2406 -7.4011 -1.6951 34 1 1.9809 -8.6316 -1.9502 35 1 4.1874 -9.3554 -0.7527 36 1 2.6409 -9.8816 -0.0561 37 1 3.6027 -10.1517 4.7780 38 1 4.7793 -6.8949 1.9365 39 1 4.6780 -6.7760 0.1642 40 1 2.2833 -6.3429 2.0189 41 1 3.3145 -5.0194 1.4305 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194971429.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:57 Heat of formation + Delta-G solvation = 29.625348 kcal Electronic energy + Delta-G solvation = -27696.675216 eV Core-core repulsion = 23740.262609 eV Total energy + Delta-G solvation = -3956.412607 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.56449 -39.83920 -38.68764 -37.35801 -35.16000 -34.13568 -33.74712 -32.49787 -31.26193 -29.11855 -28.00088 -26.59070 -25.69009 -24.09503 -23.62079 -21.66733 -20.50489 -19.86526 -19.48759 -19.09860 -17.87457 -17.25027 -16.57671 -16.37079 -16.02728 -15.64338 -15.49003 -15.04444 -14.79934 -14.66238 -14.19631 -13.96541 -13.75441 -13.60256 -13.07761 -12.85018 -12.66122 -12.31140 -11.90526 -11.85611 -11.58712 -11.51745 -11.47808 -11.41853 -11.21165 -11.01208 -10.91521 -10.78147 -10.46013 -10.35194 -10.23443 -9.95424 -9.49611 -9.46280 -8.73447 -8.41385 -7.97555 -7.71224 -6.42849 -3.83548 0.18952 1.19349 1.30976 1.39486 2.81466 2.89492 3.14986 3.25792 3.32529 3.89780 3.99283 4.13724 4.24066 4.40282 4.79647 4.87596 5.02190 5.06226 5.20039 5.22177 5.23585 5.31612 5.40537 5.55845 5.61102 5.70515 5.81512 5.82808 5.94742 5.96296 6.11950 6.23353 6.27774 6.31648 6.39950 6.49861 7.18738 7.38525 7.54152 7.75527 7.86589 8.05854 8.60767 9.17167 9.53821 10.05262 10.74963 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013332 B = 0.003219 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.779710 B = 8695.597712 C =10251.277426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.928 3.072 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.297 4.297 8 H 0.104 0.896 9 N -0.565 5.565 10 C 0.443 3.557 11 O -0.577 6.577 12 C 0.054 3.946 13 N -0.542 5.542 14 C 0.072 3.928 15 C -0.130 4.130 16 C 0.113 3.887 17 N -0.581 5.581 18 C 0.596 3.404 19 O -0.535 6.535 20 C 0.010 3.990 21 C 0.087 3.913 22 N -0.579 5.579 23 S 0.707 5.293 24 N -0.525 5.525 25 C 0.098 3.902 26 C 0.073 3.927 27 H 0.271 0.729 28 H 0.391 0.609 29 H 0.087 0.913 30 H 0.044 0.956 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.212 0.788 38 H 0.122 0.878 39 H 0.085 0.915 40 H 0.008 0.992 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.094 -17.036 5.388 18.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.427 4.427 8 H 0.122 0.878 9 N -0.201 5.201 10 C 0.228 3.772 11 O -0.461 6.461 12 C -0.077 4.077 13 N -0.267 5.267 14 C -0.056 4.056 15 C -0.169 4.169 16 C -0.009 4.009 17 N -0.312 5.312 18 C 0.378 3.622 19 O -0.412 6.412 20 C -0.164 4.164 21 C -0.106 4.106 22 N -0.419 5.419 23 S 0.750 5.250 24 N -0.375 5.375 25 C -0.027 4.027 26 C -0.056 4.056 27 H 0.081 0.919 28 H 0.225 0.775 29 H 0.105 0.895 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.108 0.892 37 H 0.228 0.772 38 H 0.138 0.862 39 H 0.103 0.897 40 H 0.026 0.974 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.543 -15.664 6.076 18.031 hybrid contribution -1.501 -0.650 -0.296 1.662 sum 5.042 -16.314 5.780 18.028 Atomic orbital electron populations 1.69617 1.05954 1.28032 1.50736 1.25257 0.95610 0.99709 0.97390 0.85817 0.79714 0.81215 0.77696 1.19209 1.20777 1.20805 1.19741 0.93366 0.82194 1.47410 0.87843 1.41892 1.09188 1.04641 1.64421 1.19814 0.88463 0.84582 0.84329 1.90477 1.13633 1.86882 1.55119 1.21826 0.93605 0.90948 1.01296 1.57810 1.28760 1.03413 1.36687 1.21508 0.95832 0.89799 0.98418 1.21867 0.99420 0.97990 0.97621 1.21969 1.00122 0.95980 0.82796 1.47825 1.62613 1.15087 1.05689 1.16980 0.78690 0.84756 0.81768 1.90793 1.45958 1.18315 1.86130 1.22530 1.06702 0.88903 0.98243 1.23729 0.98601 1.02981 0.85308 1.72238 1.21969 1.10674 1.37067 1.79437 1.44053 1.11122 0.90371 1.73238 1.19465 1.20538 1.24233 1.22504 0.97200 0.78313 1.04704 1.21681 0.94072 1.01882 0.88008 0.91946 0.77549 0.89481 0.93791 0.94660 0.91032 0.89610 0.90249 0.91443 0.89246 0.77181 0.86159 0.89656 0.97379 0.87043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.25 13.05 55.50 0.72 -23.53 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 20.70 29.55 -169.99 -5.02 15.68 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.30 -8.10 9.68 -14.94 -0.14 -8.25 16 8 H 0.10 2.95 7.16 -52.48 -0.38 2.58 16 9 N -0.56 -13.97 5.29 -10.96 -0.06 -14.03 16 10 C 0.44 10.08 7.37 -10.98 -0.08 10.00 16 11 O -0.58 -14.77 13.97 5.54 0.08 -14.69 16 12 C 0.05 0.95 5.44 -4.97 -0.03 0.92 16 13 N -0.54 -8.71 3.60 -241.00 -0.87 -9.57 16 14 C 0.07 0.93 5.32 -5.13 -0.03 0.90 16 15 C -0.13 -1.41 5.77 -27.24 -0.16 -1.57 16 16 C 0.11 1.23 6.16 -3.02 -0.02 1.21 16 17 N -0.58 -7.36 2.18 -173.60 -0.38 -7.74 16 18 C 0.60 7.88 7.63 -12.37 -0.09 7.79 16 19 O -0.53 -7.90 16.10 5.31 0.09 -7.81 16 20 C 0.01 0.12 6.55 -83.71 -0.55 -0.42 16 21 C 0.09 0.91 11.23 -17.87 -0.20 0.71 16 22 N -0.58 -6.12 11.41 19.43 0.22 -5.90 16 23 S 0.71 6.67 23.69 -107.50 -2.55 4.12 16 24 N -0.53 -6.18 6.91 23.18 0.16 -6.02 16 25 C 0.10 1.34 5.10 -3.97 -0.02 1.32 16 26 C 0.07 1.18 4.48 -5.74 -0.03 1.15 16 27 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 28 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 29 H 0.09 1.37 7.57 -51.93 -0.39 0.98 16 30 H 0.04 0.73 8.11 -51.93 -0.42 0.31 16 31 H 0.04 0.48 7.32 -51.93 -0.38 0.10 16 32 H 0.07 0.85 7.36 -51.93 -0.38 0.46 16 33 H 0.09 1.05 7.98 -51.93 -0.41 0.63 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.99 6.96 -51.93 -0.36 0.63 16 37 H 0.21 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.12 1.61 4.67 -58.68 -0.27 1.33 16 39 H 0.09 1.21 8.11 -51.93 -0.42 0.79 16 40 H 0.01 0.14 7.91 -51.93 -0.41 -0.27 16 41 H 0.11 2.16 5.62 -51.93 -0.29 1.87 16 LS Contribution 346.63 15.07 5.22 5.22 Total: -1.00 -31.71 346.63 -8.67 -40.38 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -4.85 Total: 9.65 kcal Atomic # 6 Polarization: 15.68 SS G_CDS: -1.44 Total: 14.24 kcal Atomic # 7 Polarization: -66.59 SS G_CDS: -0.20 Total: -66.79 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: 0.16 Total: -22.50 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 6.67 SS G_CDS: -2.55 Total: 4.12 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.71 -8.67 -40.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194971429.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.008 kcal (2) G-P(sol) polarization free energy of solvation -31.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds