Wall clock time and date at job start Tue Mar 31 2020 22:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86799 * 120.00083 * 2 1 4 4 H 1.48499 * 109.47427 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47161 * 299.99877 * 3 2 1 6 6 H 1.48500 * 109.47482 * 59.99853 * 3 2 1 7 7 C 1.38955 * 119.99897 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99978 * 179.97438 * 7 2 1 9 9 N 1.37089 * 119.99915 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99796 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99955 * 359.97438 * 10 9 7 12 12 C 1.50705 * 120.00044 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46745 * 180.02562 * 12 10 9 14 14 C 1.46203 * 110.99417 * 197.07951 * 13 12 10 15 15 C 1.51165 * 109.04458 * 144.77594 * 14 13 12 16 16 C 1.53797 * 109.66087 * 92.49281 * 15 14 13 17 17 N 1.47614 * 111.25261 * 319.84979 * 16 15 14 18 18 C 1.34780 * 118.74801 * 138.34479 * 17 16 15 19 19 O 1.21566 * 119.99674 * 357.53870 * 18 17 16 20 20 C 1.47746 * 120.00187 * 177.53944 * 18 17 16 21 21 C 1.39354 * 124.11833 * 186.92022 * 20 18 17 22 22 N 1.30089 * 112.14660 * 179.97438 * 21 20 18 23 23 S 1.55924 * 108.75625 * 359.97438 * 22 21 20 24 24 N 1.31499 * 124.11471 * 6.61697 * 20 18 17 25 25 C 1.44881 * 122.50794 * 318.36628 * 17 16 15 26 26 C 1.41441 * 111.00499 * 66.04760 * 13 12 10 27 27 H 0.96998 * 120.00216 * 359.97438 * 1 2 3 28 28 H 0.96999 * 120.00606 * 359.97438 * 9 7 2 29 29 H 1.08997 * 109.47094 * 59.99443 * 12 10 9 30 30 H 1.09002 * 109.46664 * 299.99767 * 12 10 9 31 31 H 1.09005 * 109.53069 * 264.65790 * 14 13 12 32 32 H 1.08997 * 109.53299 * 24.80113 * 14 13 12 33 33 H 1.09004 * 109.49300 * 332.39802 * 15 14 13 34 34 H 1.08996 * 109.36657 * 212.51487 * 15 14 13 35 35 H 1.08997 * 109.11509 * 199.40909 * 16 15 14 36 36 H 1.08996 * 109.11380 * 80.28397 * 16 15 14 37 37 H 1.07997 * 123.92538 * 0.02562 * 21 20 18 38 38 H 1.08997 * 109.43904 * 209.77014 * 25 17 16 39 39 H 1.09004 * 109.43435 * 329.64185 * 25 17 16 40 40 H 1.09002 * 109.38829 * 71.51690 * 26 13 12 41 41 H 1.09002 * 109.38106 * 311.83732 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2437 -4.8630 0.0000 13 7 2.1984 -5.9795 0.0007 14 6 1.5475 -7.2255 -0.4007 15 6 2.5244 -8.0571 -1.2002 16 6 3.2739 -9.0186 -0.2626 17 7 3.6235 -8.3599 1.0113 18 6 3.4734 -9.0488 2.1599 19 8 3.0150 -10.1745 2.1380 20 6 3.8659 -8.4360 3.4457 21 6 3.8788 -9.1140 4.6631 22 7 4.2630 -8.3518 5.6449 23 16 4.5744 -6.9307 5.0841 24 7 4.2512 -7.1859 3.5797 25 6 4.1213 -7.0007 1.0740 26 6 2.9344 -6.0164 1.2080 27 1 -0.4850 0.8400 0.0004 28 1 0.3533 -2.3907 0.0005 29 1 0.6174 -4.9205 -0.8902 30 1 0.6168 -4.9209 0.8897 31 1 1.2391 -7.7779 0.4870 32 1 0.6733 -6.9998 -1.0113 33 1 3.2406 -7.4011 -1.6951 34 1 1.9809 -8.6316 -1.9502 35 1 4.1874 -9.3554 -0.7527 36 1 2.6409 -9.8816 -0.0561 37 1 3.6027 -10.1517 4.7780 38 1 4.7793 -6.8949 1.9365 39 1 4.6780 -6.7760 0.1642 40 1 2.2833 -6.3429 2.0189 41 1 3.3145 -5.0194 1.4305 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194971429.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:57 Heat of formation + Delta-G solvation = 6.651685 kcal Electronic energy + Delta-G solvation = -27697.671428 eV Core-core repulsion = 23740.262609 eV Total energy + Delta-G solvation = -3957.408819 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.48260 -40.95258 -40.13874 -38.75528 -36.38714 -35.77365 -34.91066 -33.49531 -33.24214 -30.44928 -28.99739 -27.80357 -27.01464 -25.74030 -24.58812 -22.73659 -21.57184 -21.09863 -20.60336 -20.34939 -19.82683 -18.26445 -17.82660 -17.55352 -17.22501 -16.67802 -16.57152 -16.50367 -16.18576 -16.03048 -15.59539 -15.37930 -15.35588 -14.64107 -14.32952 -14.21145 -13.85715 -13.48208 -13.26037 -13.07425 -13.02509 -12.89419 -12.70025 -12.49957 -12.37499 -12.31438 -12.23788 -12.09955 -11.94898 -11.76557 -11.48884 -11.39566 -10.94224 -10.30250 -10.24466 -9.97147 -9.70437 -9.06462 -8.43696 -5.91753 -0.68319 0.36268 0.44028 0.59645 1.38168 1.43616 1.57415 1.86343 1.92354 2.08882 2.30228 2.77961 3.21432 3.23650 3.42855 3.52286 3.87838 4.03412 4.04197 4.12945 4.23831 4.25199 4.41700 4.44120 4.45757 4.53305 4.57575 4.64970 4.76203 4.90335 4.98084 5.07957 5.17497 5.24331 5.36740 5.44463 5.50070 5.94981 6.14721 6.19386 6.53796 6.63946 6.85815 7.16501 7.60350 8.15600 8.73981 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013332 B = 0.003219 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.779710 B = 8695.597712 C =10251.277426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.014 4.014 3 Si 0.991 3.009 4 H -0.272 1.272 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.327 4.327 8 H 0.081 0.919 9 N -0.576 5.576 10 C 0.443 3.557 11 O -0.607 6.607 12 C 0.065 3.935 13 N -0.552 5.552 14 C 0.072 3.928 15 C -0.122 4.122 16 C 0.110 3.890 17 N -0.582 5.582 18 C 0.595 3.405 19 O -0.553 6.553 20 C -0.005 4.005 21 C 0.091 3.909 22 N -0.592 5.592 23 S 0.758 5.242 24 N -0.551 5.551 25 C 0.111 3.889 26 C 0.084 3.916 27 H 0.276 0.724 28 H 0.394 0.606 29 H 0.111 0.889 30 H 0.055 0.945 31 H 0.030 0.970 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.229 0.771 38 H 0.126 0.874 39 H 0.079 0.921 40 H 0.003 0.997 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.898 -17.763 5.318 19.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.214 4.214 3 Si 0.815 3.185 4 H -0.196 1.196 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.457 4.457 8 H 0.099 0.901 9 N -0.214 5.214 10 C 0.230 3.770 11 O -0.493 6.493 12 C -0.066 4.066 13 N -0.277 5.277 14 C -0.054 4.054 15 C -0.161 4.161 16 C -0.010 4.010 17 N -0.312 5.312 18 C 0.378 3.622 19 O -0.431 6.431 20 C -0.178 4.178 21 C -0.101 4.101 22 N -0.433 5.433 23 S 0.801 5.199 24 N -0.402 5.402 25 C -0.014 4.014 26 C -0.046 4.046 27 H 0.085 0.915 28 H 0.228 0.772 29 H 0.129 0.871 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.128 0.872 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.245 0.755 38 H 0.143 0.857 39 H 0.097 0.903 40 H 0.021 0.979 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.329 -16.424 5.994 18.594 hybrid contribution -1.411 -0.442 -0.214 1.494 sum 4.918 -16.866 5.780 18.495 Atomic orbital electron populations 1.69681 1.06873 1.29086 1.50805 1.26009 0.96475 1.02356 0.96512 0.84895 0.78166 0.77277 0.78169 1.19600 1.19836 1.19800 1.19693 0.92703 0.83887 1.49391 0.90105 1.41958 1.09244 1.04767 1.65413 1.20753 0.88388 0.85775 0.82082 1.90458 1.15365 1.87654 1.55837 1.21721 0.93367 0.88607 1.02902 1.57868 1.28890 1.04381 1.36594 1.21628 0.96835 0.88325 0.98640 1.21831 0.98842 0.97673 0.97724 1.22120 1.00958 0.95824 0.82146 1.47860 1.62428 1.14518 1.06399 1.17118 0.78269 0.84553 0.82212 1.90775 1.46848 1.18998 1.86497 1.22446 1.07914 0.89121 0.98286 1.23910 0.97922 1.03601 0.84633 1.72224 1.22469 1.11312 1.37299 1.79231 1.42081 1.10061 0.88529 1.73017 1.20083 1.20865 1.26221 1.22273 0.96088 0.78431 1.04646 1.21446 0.94706 1.00438 0.87997 0.91456 0.77233 0.87112 0.92662 0.95216 0.89386 0.90883 0.87226 0.89896 0.89112 0.75523 0.85744 0.90283 0.97938 0.90715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.47 13.05 21.66 0.28 -49.19 16 2 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 3 Si 0.99 42.38 29.55 68.60 2.03 44.41 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 6 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 7 C -0.33 -18.21 9.68 84.04 0.81 -17.40 16 8 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 9 N -0.58 -29.03 5.29 -306.97 -1.62 -30.65 16 10 C 0.44 20.46 7.37 87.66 0.65 21.11 16 11 O -0.61 -31.97 13.97 -3.08 -0.04 -32.01 16 12 C 0.06 2.22 5.44 85.56 0.47 2.68 16 13 N -0.55 -17.33 3.60 -916.38 -3.30 -20.63 16 14 C 0.07 1.73 5.32 85.84 0.46 2.19 16 15 C -0.12 -2.37 5.77 30.26 0.17 -2.19 16 16 C 0.11 2.20 6.16 86.43 0.53 2.73 16 17 N -0.58 -14.19 2.18 -821.42 -1.79 -15.98 16 18 C 0.60 15.24 7.63 86.76 0.66 15.91 16 19 O -0.55 -15.74 16.10 -3.92 -0.06 -15.80 16 20 C 0.00 -0.11 6.55 41.98 0.28 0.16 16 21 C 0.09 1.80 11.23 85.22 0.96 2.76 16 22 N -0.59 -11.74 11.41 -92.45 -1.05 -12.79 16 23 S 0.76 13.57 23.69 -56.49 -1.34 12.23 16 24 N -0.55 -12.71 6.91 -80.56 -0.56 -13.27 16 25 C 0.11 3.02 5.10 87.29 0.44 3.47 16 26 C 0.08 2.72 4.48 87.91 0.39 3.12 16 27 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 28 H 0.39 19.05 7.90 -92.71 -0.73 18.32 16 29 H 0.11 3.29 7.57 -2.39 -0.02 3.27 16 30 H 0.06 1.79 8.11 -2.39 -0.02 1.77 16 31 H 0.03 0.76 7.32 -2.38 -0.02 0.74 16 32 H 0.09 1.82 7.36 -2.39 -0.02 1.80 16 33 H 0.07 1.65 7.98 -2.39 -0.02 1.64 16 34 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.09 1.83 6.96 -2.39 -0.02 1.82 16 37 H 0.23 3.48 8.06 -2.91 -0.02 3.45 16 38 H 0.13 3.33 4.67 -15.72 -0.07 3.25 16 39 H 0.08 2.25 8.11 -2.39 -0.02 2.23 16 40 H 0.00 0.09 7.91 -2.39 -0.02 0.07 16 41 H 0.07 3.00 5.62 -2.39 -0.01 2.99 16 Total: -1.00 -68.46 346.63 -0.87 -69.33 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: 0.30 Total: 30.10 kcal Atomic # 6 Polarization: 27.96 SS G_CDS: 6.29 Total: 34.25 kcal Atomic # 7 Polarization: -134.46 SS G_CDS: -8.04 Total: -142.51 kcal Atomic # 8 Polarization: -47.70 SS G_CDS: -0.11 Total: -47.81 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 16 Polarization: 13.57 SS G_CDS: -1.34 Total: 12.23 kcal Total: -68.46 -0.87 -69.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194971429.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.986 kcal (2) G-P(sol) polarization free energy of solvation -68.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds