Wall clock time and date at job start Tue Mar 31 2020 22:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86801 * 119.99480 * 2 1 4 4 H 1.48503 * 109.47338 * 240.00082 * 3 2 1 5 5 H 1.48501 * 109.47414 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46841 * 120.00453 * 3 2 1 7 7 C 1.38945 * 120.00347 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00101 * 179.97438 * 7 2 1 9 9 N 1.37094 * 119.99911 * 0.02562 * 7 2 1 10 10 C 1.34780 * 120.00217 * 180.02562 * 9 7 2 11 11 O 1.21299 * 119.99715 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00060 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.46671 * 179.97438 * 12 10 9 14 14 C 1.46203 * 110.99841 * 197.07978 * 13 12 10 15 15 C 1.51166 * 109.04262 * 144.77552 * 14 13 12 16 16 C 1.53797 * 109.65829 * 92.49854 * 15 14 13 17 17 N 1.47619 * 111.25321 * 319.84596 * 16 15 14 18 18 C 1.34777 * 118.74807 * 138.34541 * 17 16 15 19 19 O 1.21604 * 119.99948 * 357.61089 * 18 17 16 20 20 C 1.47444 * 119.99890 * 177.60591 * 18 17 16 21 21 C 1.37986 * 124.15509 * 186.96011 * 20 18 17 22 22 S 1.72101 * 104.03561 * 179.97438 * 21 20 18 23 23 N 1.56408 * 96.15338 * 359.97438 * 22 21 20 24 24 N 1.27424 * 109.87249 * 359.74722 * 23 22 21 25 25 C 1.44880 * 122.50338 * 318.37027 * 17 16 15 26 26 C 1.41447 * 110.99948 * 66.04962 * 13 12 10 27 27 H 0.97001 * 120.00241 * 359.97438 * 1 2 3 28 28 H 0.97004 * 119.99978 * 359.97438 * 9 7 2 29 29 H 1.09000 * 109.47378 * 60.00165 * 12 10 9 30 30 H 1.08994 * 109.47167 * 299.99634 * 12 10 9 31 31 H 1.08999 * 109.53131 * 264.65865 * 14 13 12 32 32 H 1.09000 * 109.53190 * 24.81077 * 14 13 12 33 33 H 1.09001 * 109.49685 * 332.39841 * 15 14 13 34 34 H 1.09002 * 109.36340 * 212.51297 * 15 14 13 35 35 H 1.08999 * 109.11319 * 199.40890 * 16 15 14 36 36 H 1.08997 * 109.11328 * 80.28460 * 16 15 14 37 37 H 1.08003 * 127.97996 * 359.95151 * 21 20 18 38 38 H 1.08999 * 109.43632 * 209.76775 * 25 17 16 39 39 H 1.08999 * 109.44069 * 329.63808 * 25 17 16 40 40 H 1.08988 * 109.38672 * 71.52486 * 26 13 12 41 41 H 1.08996 * 109.38371 * 311.83174 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1017 1.6966 -1.2125 5 1 1.2829 2.7465 0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0016 10 6 1.9974 -3.5578 -0.0016 11 8 3.2104 -3.5577 -0.0011 12 6 1.2440 -4.8629 -0.0022 13 7 2.1987 -5.9794 -0.0027 14 6 1.5475 -7.2253 -0.4041 15 6 2.5240 -8.0564 -1.2047 16 6 3.2742 -9.0183 -0.2681 17 7 3.6246 -8.3601 1.0059 18 6 3.4754 -9.0496 2.1543 19 8 3.0180 -10.1762 2.1320 20 6 3.8667 -8.4380 3.4376 21 6 3.8813 -9.1091 4.6431 22 16 4.4099 -7.9244 5.7740 23 7 4.5644 -6.7619 4.7391 24 7 4.2549 -7.1751 3.5741 25 6 4.1224 -7.0010 1.0688 26 6 2.9355 -6.0168 1.2041 27 1 -0.4850 0.8400 0.0004 28 1 0.3535 -2.3906 -0.0016 29 1 0.6176 -4.9205 -0.8924 30 1 0.6170 -4.9209 0.8875 31 1 1.2399 -7.7781 0.4835 32 1 0.6730 -6.9993 -1.0141 33 1 3.2397 -7.4002 -1.6999 34 1 1.9799 -8.6307 -1.9546 35 1 4.1874 -9.3548 -0.7590 36 1 2.6413 -9.8814 -0.0616 37 1 3.6207 -10.1399 4.8332 38 1 4.7811 -6.8955 1.9309 39 1 4.6784 -6.7758 0.1587 40 1 2.2851 -6.3437 2.0152 41 1 3.3158 -5.0199 1.4268 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196673144.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:50 Heat of formation + Delta-G solvation = 43.362258 kcal Electronic energy + Delta-G solvation = -27701.158630 eV Core-core repulsion = 23745.341700 eV Total energy + Delta-G solvation = -3955.816929 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.55428 -39.90460 -38.71694 -37.34535 -35.02093 -33.83025 -33.10690 -32.06548 -31.21084 -29.05117 -27.66865 -26.83107 -25.57268 -24.13140 -23.91587 -21.69668 -20.69133 -20.22061 -19.26988 -18.57999 -17.80896 -16.90842 -16.60230 -16.21289 -16.01289 -15.69139 -15.49663 -14.99402 -14.78137 -14.62369 -14.16619 -13.93297 -13.73648 -13.59843 -13.08297 -12.94452 -12.67210 -12.30933 -12.21149 -11.81757 -11.63847 -11.48781 -11.43442 -11.15920 -10.92855 -10.84250 -10.71896 -10.41311 -10.35053 -10.27593 -10.23701 -10.17617 -9.92258 -9.42474 -8.72728 -8.36240 -7.92395 -7.66172 -6.37938 -3.78483 -0.20363 0.65525 1.21096 1.28605 2.81180 2.91342 3.22714 3.28026 3.32572 3.59753 3.95369 4.04040 4.28255 4.37927 4.47776 4.81111 4.95764 5.05755 5.11039 5.25353 5.28142 5.36594 5.45147 5.58680 5.64479 5.74898 5.85131 5.87217 5.98305 6.00795 6.26281 6.33709 6.36155 6.47394 6.51985 7.13388 7.31936 7.44137 7.58653 7.79918 7.88709 8.10613 8.66097 9.22060 9.58917 10.10817 10.79836 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013049 B = 0.003169 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.197698 B = 8833.703313 C =10430.551066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.297 4.297 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.443 3.557 11 O -0.575 6.575 12 C 0.054 3.946 13 N -0.542 5.542 14 C 0.072 3.928 15 C -0.130 4.130 16 C 0.112 3.888 17 N -0.582 5.582 18 C 0.595 3.405 19 O -0.537 6.537 20 C -0.021 4.021 21 C -0.241 4.241 22 S 0.456 5.544 23 N -0.285 5.285 24 N -0.197 5.197 25 C 0.094 3.906 26 C 0.073 3.927 27 H 0.271 0.729 28 H 0.391 0.609 29 H 0.087 0.913 30 H 0.044 0.956 31 H 0.034 0.966 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.207 0.793 38 H 0.121 0.879 39 H 0.087 0.913 40 H 0.008 0.992 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.631 -20.095 7.778 22.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.202 5.202 10 C 0.228 3.772 11 O -0.459 6.459 12 C -0.077 4.077 13 N -0.266 5.266 14 C -0.056 4.056 15 C -0.169 4.169 16 C -0.009 4.009 17 N -0.312 5.312 18 C 0.378 3.622 19 O -0.415 6.415 20 C -0.168 4.168 21 C -0.398 4.398 22 S 0.592 5.408 23 N -0.265 5.265 24 N -0.067 5.067 25 C -0.030 4.030 26 C -0.057 4.057 27 H 0.081 0.919 28 H 0.224 0.776 29 H 0.105 0.895 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.224 0.776 38 H 0.137 0.863 39 H 0.105 0.895 40 H 0.026 0.974 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.009 -18.832 8.291 21.436 hybrid contribution -1.407 -0.341 -0.419 1.507 sum 4.603 -19.173 7.872 21.231 Atomic orbital electron populations 1.69606 1.05933 1.28177 1.50781 1.25244 0.95606 0.99668 0.97422 0.85936 0.78762 0.80556 0.79065 1.19905 1.21045 1.19926 1.19649 0.93333 0.82238 1.47487 0.87948 1.41871 1.09153 1.04611 1.64543 1.19812 0.88476 0.84581 0.84287 1.90483 1.13623 1.86863 1.54977 1.21822 0.93608 0.90973 1.01260 1.57827 1.28669 1.03369 1.36771 1.21508 0.95833 0.89864 0.98377 1.21868 0.99434 0.97986 0.97605 1.21970 1.00108 0.95980 0.82849 1.47862 1.62543 1.15123 1.05698 1.16882 0.78696 0.84799 0.81800 1.90795 1.46091 1.18304 1.86265 1.22736 1.06564 0.90395 0.97072 1.28852 1.05739 1.08932 0.96285 1.81541 1.44297 0.95331 1.19595 1.78847 1.22331 1.24789 1.00563 1.71945 1.11344 1.11988 1.11428 1.22529 0.97304 0.78148 1.05045 1.21684 0.93978 1.02100 0.87891 0.91892 0.77565 0.89502 0.93779 0.94730 0.91030 0.89547 0.90270 0.91428 0.89338 0.77642 0.86250 0.89480 0.97397 0.86793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.76 13.05 55.50 0.72 -24.04 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.21 29.55 -169.99 -5.02 16.19 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.30 -8.31 9.68 -14.94 -0.14 -8.46 16 8 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 9 N -0.57 -14.38 5.29 -10.96 -0.06 -14.44 16 10 C 0.44 10.44 7.37 -10.99 -0.08 10.36 16 11 O -0.58 -15.25 13.96 5.54 0.08 -15.17 16 12 C 0.05 0.98 5.44 -4.98 -0.03 0.96 16 13 N -0.54 -9.08 3.60 -241.01 -0.87 -9.95 16 14 C 0.07 0.96 5.32 -5.13 -0.03 0.94 16 15 C -0.13 -1.46 5.77 -27.24 -0.16 -1.62 16 16 C 0.11 1.28 6.16 -3.01 -0.02 1.26 16 17 N -0.58 -7.75 2.18 -173.71 -0.38 -8.13 16 18 C 0.60 8.23 7.62 -12.51 -0.10 8.14 16 19 O -0.54 -8.22 16.10 5.27 0.08 -8.13 16 20 C -0.02 -0.26 6.60 -83.78 -0.55 -0.81 16 21 C -0.24 -2.13 11.22 30.64 0.34 -1.78 16 22 S 0.46 3.49 23.38 -107.50 -2.51 0.98 16 23 N -0.29 -3.55 12.49 60.35 0.75 -2.80 16 24 N -0.20 -2.69 7.12 32.74 0.23 -2.45 16 25 C 0.09 1.37 5.10 -3.97 -0.02 1.35 16 26 C 0.07 1.25 4.47 -5.74 -0.03 1.23 16 27 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 29 H 0.09 1.41 7.57 -51.93 -0.39 1.02 16 30 H 0.04 0.77 8.11 -51.93 -0.42 0.35 16 31 H 0.03 0.49 7.32 -51.93 -0.38 0.11 16 32 H 0.07 0.87 7.36 -51.93 -0.38 0.49 16 33 H 0.09 1.09 7.98 -51.93 -0.41 0.68 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.09 1.02 6.97 -51.93 -0.36 0.66 16 37 H 0.21 1.30 8.06 -52.48 -0.42 0.88 16 38 H 0.12 1.77 4.65 -70.34 -0.33 1.44 16 39 H 0.09 1.30 8.11 -51.93 -0.42 0.88 16 40 H 0.01 0.14 7.91 -51.94 -0.41 -0.27 16 41 H 0.11 2.38 5.61 -51.93 -0.29 2.09 16 LS Contribution 347.59 15.07 5.24 5.24 Total: -1.00 -33.23 347.59 -7.54 -40.76 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -4.90 Total: 9.89 kcal Atomic # 6 Polarization: 12.95 SS G_CDS: -0.90 Total: 12.04 kcal Atomic # 7 Polarization: -62.21 SS G_CDS: 0.41 Total: -61.81 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: 0.16 Total: -23.30 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 3.49 SS G_CDS: -2.51 Total: 0.98 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.23 -7.54 -40.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196673144.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.127 kcal (2) G-P(sol) polarization free energy of solvation -33.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds