Wall clock time and date at job start Tue Mar 31 2020 22:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86801 * 119.99480 * 2 1 4 4 H 1.48503 * 109.47338 * 240.00082 * 3 2 1 5 5 H 1.48501 * 109.47414 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46841 * 120.00453 * 3 2 1 7 7 C 1.38945 * 120.00347 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00101 * 179.97438 * 7 2 1 9 9 N 1.37094 * 119.99911 * 0.02562 * 7 2 1 10 10 C 1.34780 * 120.00217 * 180.02562 * 9 7 2 11 11 O 1.21299 * 119.99715 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00060 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.46671 * 179.97438 * 12 10 9 14 14 C 1.46203 * 110.99841 * 197.07978 * 13 12 10 15 15 C 1.51166 * 109.04262 * 144.77552 * 14 13 12 16 16 C 1.53797 * 109.65829 * 92.49854 * 15 14 13 17 17 N 1.47619 * 111.25321 * 319.84596 * 16 15 14 18 18 C 1.34777 * 118.74807 * 138.34541 * 17 16 15 19 19 O 1.21604 * 119.99948 * 357.61089 * 18 17 16 20 20 C 1.47444 * 119.99890 * 177.60591 * 18 17 16 21 21 C 1.37986 * 124.15509 * 186.96011 * 20 18 17 22 22 S 1.72101 * 104.03561 * 179.97438 * 21 20 18 23 23 N 1.56408 * 96.15338 * 359.97438 * 22 21 20 24 24 N 1.27424 * 109.87249 * 359.74722 * 23 22 21 25 25 C 1.44880 * 122.50338 * 318.37027 * 17 16 15 26 26 C 1.41447 * 110.99948 * 66.04962 * 13 12 10 27 27 H 0.97001 * 120.00241 * 359.97438 * 1 2 3 28 28 H 0.97004 * 119.99978 * 359.97438 * 9 7 2 29 29 H 1.09000 * 109.47378 * 60.00165 * 12 10 9 30 30 H 1.08994 * 109.47167 * 299.99634 * 12 10 9 31 31 H 1.08999 * 109.53131 * 264.65865 * 14 13 12 32 32 H 1.09000 * 109.53190 * 24.81077 * 14 13 12 33 33 H 1.09001 * 109.49685 * 332.39841 * 15 14 13 34 34 H 1.09002 * 109.36340 * 212.51297 * 15 14 13 35 35 H 1.08999 * 109.11319 * 199.40890 * 16 15 14 36 36 H 1.08997 * 109.11328 * 80.28460 * 16 15 14 37 37 H 1.08003 * 127.97996 * 359.95151 * 21 20 18 38 38 H 1.08999 * 109.43632 * 209.76775 * 25 17 16 39 39 H 1.08999 * 109.44069 * 329.63808 * 25 17 16 40 40 H 1.08988 * 109.38672 * 71.52486 * 26 13 12 41 41 H 1.08996 * 109.38371 * 311.83174 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1017 1.6966 -1.2125 5 1 1.2829 2.7465 0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0016 10 6 1.9974 -3.5578 -0.0016 11 8 3.2104 -3.5577 -0.0011 12 6 1.2440 -4.8629 -0.0022 13 7 2.1987 -5.9794 -0.0027 14 6 1.5475 -7.2253 -0.4041 15 6 2.5240 -8.0564 -1.2047 16 6 3.2742 -9.0183 -0.2681 17 7 3.6246 -8.3601 1.0059 18 6 3.4754 -9.0496 2.1543 19 8 3.0180 -10.1762 2.1320 20 6 3.8667 -8.4380 3.4376 21 6 3.8813 -9.1091 4.6431 22 16 4.4099 -7.9244 5.7740 23 7 4.5644 -6.7619 4.7391 24 7 4.2549 -7.1751 3.5741 25 6 4.1224 -7.0010 1.0688 26 6 2.9355 -6.0168 1.2041 27 1 -0.4850 0.8400 0.0004 28 1 0.3535 -2.3906 -0.0016 29 1 0.6176 -4.9205 -0.8924 30 1 0.6170 -4.9209 0.8875 31 1 1.2399 -7.7781 0.4835 32 1 0.6730 -6.9993 -1.0141 33 1 3.2397 -7.4002 -1.6999 34 1 1.9799 -8.6307 -1.9546 35 1 4.1874 -9.3548 -0.7590 36 1 2.6413 -9.8814 -0.0616 37 1 3.6207 -10.1399 4.8332 38 1 4.7811 -6.8955 1.9309 39 1 4.6784 -6.7758 0.1587 40 1 2.2851 -6.3437 2.0152 41 1 3.3158 -5.0199 1.4268 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196673144.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:49 Heat of formation + Delta-G solvation = 18.692371 kcal Electronic energy + Delta-G solvation = -27702.228396 eV Core-core repulsion = 23745.341700 eV Total energy + Delta-G solvation = -3956.886696 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.47808 -41.02099 -40.23510 -38.81247 -36.34057 -35.73045 -34.15176 -33.25528 -32.95192 -30.44896 -28.56991 -28.09399 -26.99132 -25.72526 -25.02665 -22.78268 -21.73593 -21.17415 -21.03218 -19.91853 -19.54912 -18.03579 -17.70917 -17.50417 -17.14055 -16.67045 -16.64011 -16.52059 -16.20469 -16.05928 -15.60223 -15.38225 -15.37140 -14.65232 -14.35964 -14.22890 -13.95278 -13.50608 -13.35272 -13.12538 -13.00834 -12.95292 -12.72335 -12.70800 -12.42853 -12.33589 -12.12250 -11.89053 -11.76914 -11.43134 -11.31627 -11.18122 -11.01982 -10.79632 -10.26308 -9.98204 -9.75660 -9.07946 -8.44136 -5.92444 -0.95178 -0.04291 0.27068 0.52853 1.40660 1.41950 1.52939 1.84462 1.92504 2.08384 2.29793 2.69786 2.77448 3.22644 3.40853 3.49500 3.65766 3.87956 4.02758 4.11548 4.21633 4.23212 4.29358 4.40356 4.43966 4.52196 4.55858 4.64711 4.74705 4.88685 4.98214 5.07474 5.18337 5.30602 5.43065 5.45145 5.93963 6.09780 6.16837 6.43531 6.52237 6.63427 6.85897 7.15589 7.59375 8.15263 8.73177 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013049 B = 0.003169 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.197698 B = 8833.703313 C =10430.551066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.014 4.014 3 Si 0.991 3.009 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.330 4.330 8 H 0.080 0.920 9 N -0.576 5.576 10 C 0.442 3.558 11 O -0.608 6.608 12 C 0.065 3.935 13 N -0.552 5.552 14 C 0.072 3.928 15 C -0.122 4.122 16 C 0.109 3.891 17 N -0.583 5.583 18 C 0.594 3.406 19 O -0.555 6.555 20 C -0.051 4.051 21 C -0.233 4.233 22 S 0.560 5.440 23 N -0.341 5.341 24 N -0.229 5.229 25 C 0.109 3.891 26 C 0.086 3.914 27 H 0.277 0.723 28 H 0.394 0.606 29 H 0.113 0.887 30 H 0.055 0.945 31 H 0.029 0.971 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.111 0.889 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.233 0.767 38 H 0.120 0.880 39 H 0.081 0.919 40 H 0.000 1.000 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.259 -21.533 8.279 23.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.213 4.213 3 Si 0.815 3.185 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.460 4.460 8 H 0.098 0.902 9 N -0.213 5.213 10 C 0.229 3.771 11 O -0.494 6.494 12 C -0.066 4.066 13 N -0.277 5.277 14 C -0.055 4.055 15 C -0.161 4.161 16 C -0.011 4.011 17 N -0.313 5.313 18 C 0.379 3.621 19 O -0.434 6.434 20 C -0.198 4.198 21 C -0.389 4.389 22 S 0.696 5.304 23 N -0.321 5.321 24 N -0.097 5.097 25 C -0.016 4.016 26 C -0.043 4.043 27 H 0.086 0.914 28 H 0.228 0.772 29 H 0.131 0.869 30 H 0.073 0.927 31 H 0.047 0.953 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.129 0.871 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.250 0.750 38 H 0.137 0.863 39 H 0.099 0.901 40 H 0.018 0.982 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.621 -20.287 8.774 22.806 hybrid contribution -1.275 -0.008 -0.418 1.341 sum 4.347 -20.295 8.356 22.374 Atomic orbital electron populations 1.69671 1.06840 1.29240 1.50650 1.26012 0.96509 1.02344 0.96427 0.85015 0.77768 0.76767 0.78949 1.19615 1.19556 1.19815 1.19625 0.92701 0.83981 1.49678 0.90243 1.41936 1.09222 1.04723 1.65456 1.20779 0.88399 0.85844 0.82101 1.90464 1.15452 1.87663 1.55799 1.21722 0.93352 0.88572 1.02928 1.57883 1.28828 1.04471 1.36471 1.21640 0.96903 0.88286 0.98631 1.21838 0.98853 0.97672 0.97722 1.22132 1.00975 0.95841 0.82170 1.47887 1.62410 1.14416 1.06573 1.17060 0.78177 0.84589 0.82303 1.90771 1.47056 1.18916 1.86661 1.22706 1.08595 0.90849 0.97644 1.29276 1.03747 1.10308 0.95604 1.81108 1.40872 0.92259 1.16169 1.78460 1.24324 1.27893 1.01429 1.71935 1.12432 1.12825 1.12548 1.22243 0.96092 0.78478 1.04746 1.21392 0.94644 1.00374 0.87937 0.91397 0.77198 0.86874 0.92738 0.95285 0.89192 0.90858 0.87050 0.89860 0.89098 0.75035 0.86259 0.90104 0.98174 0.91027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.59 13.05 21.66 0.28 -50.31 16 2 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 3 Si 0.99 43.60 29.55 68.60 2.03 45.62 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.33 -19.01 9.68 84.04 0.81 -18.20 16 8 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 9 N -0.58 -30.11 5.29 -306.98 -1.62 -31.73 16 10 C 0.44 21.40 7.37 87.66 0.65 22.04 16 11 O -0.61 -33.63 13.96 -3.09 -0.04 -33.67 16 12 C 0.06 2.35 5.44 85.56 0.47 2.81 16 13 N -0.55 -18.43 3.60 -916.41 -3.30 -21.73 16 14 C 0.07 1.82 5.32 85.84 0.46 2.28 16 15 C -0.12 -2.51 5.77 30.26 0.17 -2.34 16 16 C 0.11 2.32 6.16 86.43 0.53 2.85 16 17 N -0.58 -15.33 2.18 -821.74 -1.80 -17.12 16 18 C 0.59 16.13 7.62 86.67 0.66 16.79 16 19 O -0.56 -16.37 16.10 -4.04 -0.07 -16.44 16 20 C -0.05 -1.23 6.60 41.36 0.27 -0.96 16 21 C -0.23 -3.65 11.22 67.76 0.76 -2.89 16 22 S 0.56 7.46 23.38 -56.49 -1.32 6.14 16 23 N -0.34 -8.46 12.49 37.02 0.46 -8.00 16 24 N -0.23 -6.36 7.12 -50.34 -0.36 -6.71 16 25 C 0.11 3.29 5.10 87.29 0.44 3.73 16 26 C 0.09 3.08 4.47 87.91 0.39 3.47 16 27 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 28 H 0.39 19.70 7.90 -92.71 -0.73 18.97 16 29 H 0.11 3.50 7.57 -2.39 -0.02 3.49 16 30 H 0.05 1.88 8.11 -2.39 -0.02 1.86 16 31 H 0.03 0.78 7.32 -2.39 -0.02 0.76 16 32 H 0.09 1.95 7.36 -2.39 -0.02 1.93 16 33 H 0.07 1.75 7.98 -2.39 -0.02 1.73 16 34 H 0.11 1.60 8.14 -2.39 -0.02 1.59 16 35 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.09 1.92 6.97 -2.39 -0.02 1.91 16 37 H 0.23 2.23 8.06 -2.91 -0.02 2.20 16 38 H 0.12 3.71 4.65 -26.18 -0.12 3.59 16 39 H 0.08 2.50 8.11 -2.39 -0.02 2.48 16 40 H 0.00 0.01 7.91 -2.39 -0.02 -0.01 16 41 H 0.07 3.18 5.61 -2.39 -0.01 3.17 16 Total: -1.00 -74.50 347.59 0.61 -73.89 By element: Atomic # 1 Polarization: 30.47 SS G_CDS: 0.25 Total: 30.73 kcal Atomic # 6 Polarization: 23.24 SS G_CDS: 6.09 Total: 29.33 kcal Atomic # 7 Polarization: -129.28 SS G_CDS: -6.33 Total: -135.61 kcal Atomic # 8 Polarization: -50.00 SS G_CDS: -0.11 Total: -50.11 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: 7.46 SS G_CDS: -1.32 Total: 6.14 kcal Total: -74.50 0.61 -73.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196673144.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.587 kcal (2) G-P(sol) polarization free energy of solvation -74.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds