Wall clock time and date at job start Tue Mar 31 2020 22:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86795 * 120.00104 * 2 1 4 4 H 1.48501 * 109.47199 * 239.99824 * 3 2 1 5 5 H 1.48504 * 109.47387 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47267 * 119.99761 * 3 2 1 7 7 C 1.38812 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99916 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00244 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64823 * 0.03914 * 9 7 2 11 11 C 1.55121 * 104.94383 * 203.96948 * 10 9 7 12 12 H 1.08995 * 110.93985 * 81.21102 * 11 10 9 13 13 O 1.42898 * 111.16086 * 205.12988 * 11 10 9 14 14 C 1.55163 * 101.48384 * 323.22061 * 11 10 9 15 15 H 1.08997 * 110.71704 * 276.83437 * 14 11 10 16 16 N 1.46499 * 110.71887 * 153.73674 * 14 11 10 17 17 C 1.34779 * 119.99872 * 157.44181 * 16 14 11 18 18 O 1.21286 * 120.00040 * 359.97438 * 17 16 14 19 19 C 1.50695 * 119.99727 * 179.97438 * 17 16 14 20 20 C 1.50701 * 109.46848 * 179.97438 * 19 17 16 21 21 O 1.21279 * 120.00251 * 0.02562 * 20 19 17 22 22 N 1.34777 * 120.00115 * 180.02562 * 20 19 17 23 23 C 1.46500 * 120.00376 * 180.02562 * 22 20 19 24 24 C 1.52997 * 109.47473 * 180.02562 * 23 22 20 25 25 F 1.39905 * 109.47157 * 59.99740 * 24 23 22 26 26 F 1.39900 * 109.47010 * 300.00131 * 24 23 22 27 27 F 1.39897 * 109.47422 * 179.97438 * 24 23 22 28 28 C 1.47019 * 125.64877 * 179.97438 * 9 7 2 29 29 H 0.97002 * 119.99878 * 0.02562 * 1 2 3 30 30 H 1.09007 * 110.36275 * 322.93264 * 10 9 7 31 31 H 1.09000 * 110.37004 * 85.14145 * 10 9 7 32 32 H 0.96694 * 113.99956 * 292.16227 * 13 11 10 33 33 H 0.97000 * 119.99832 * 337.43426 * 16 14 11 34 34 H 1.09002 * 109.47002 * 60.00392 * 19 17 16 35 35 H 1.09001 * 109.47545 * 299.99600 * 19 17 16 36 36 H 0.97004 * 120.00228 * 0.02562 * 22 20 19 37 37 H 1.09002 * 109.47129 * 59.99747 * 23 22 20 38 38 H 1.09001 * 109.46596 * 300.00102 * 23 22 20 39 39 H 1.09000 * 109.88206 * 59.56138 * 28 9 7 40 40 H 1.08997 * 109.88616 * 298.39462 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1416 -2.5332 -0.0008 11 6 -0.4055 -3.9351 0.6086 12 1 -0.3597 -3.9015 1.6971 13 8 -1.6580 -4.4622 0.1666 14 6 0.7783 -4.7525 0.0271 15 1 0.5488 -5.1004 -0.9800 16 7 1.1076 -5.8812 0.9011 17 6 1.7580 -6.9515 0.4033 18 8 2.0702 -6.9805 -0.7683 19 6 2.0971 -8.1123 1.3024 20 6 2.8167 -9.1706 0.5066 21 8 3.0332 -8.9989 -0.6743 22 7 3.2197 -10.3079 1.1072 23 6 3.9197 -11.3364 0.3337 24 6 4.2628 -12.5156 1.2462 25 9 3.0851 -13.0524 1.7774 26 9 5.0858 -12.0748 2.2881 27 9 4.9308 -13.4980 0.5075 28 6 1.9317 -3.7275 0.0005 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5999 -1.7587 0.6143 31 1 -0.5267 -2.4850 -1.0194 32 1 -2.4273 -3.9838 0.5045 33 1 0.8576 -5.8581 1.8381 34 1 1.1800 -8.5308 1.7170 35 1 2.7388 -7.7682 2.1137 36 1 3.0462 -10.4454 2.0516 37 1 4.8370 -10.9181 -0.0806 38 1 3.2782 -11.6801 -0.4778 39 1 2.5577 -3.8510 0.8843 40 1 2.5286 -3.8642 -0.9011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197343206.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:47 Heat of formation + Delta-G solvation = -236.154965 kcal Electronic energy + Delta-G solvation = -29204.319988 eV Core-core repulsion = 24219.479920 eV Total energy + Delta-G solvation = -4984.840068 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.69547 -48.20335 -48.17560 -40.48719 -39.13404 -37.65659 -35.39955 -35.08138 -33.98699 -32.04905 -31.27469 -29.30698 -28.18614 -26.85411 -24.51394 -23.85952 -21.75581 -20.79052 -20.43493 -19.93261 -19.16754 -18.95048 -18.57961 -17.54241 -17.13496 -16.80573 -16.29944 -16.25031 -15.79446 -15.48142 -15.20097 -14.98473 -14.71235 -14.64970 -14.59606 -14.32253 -14.30958 -13.99313 -13.84420 -13.57433 -13.41642 -13.20776 -12.87154 -12.46160 -12.44970 -12.17566 -11.83080 -11.50982 -11.26557 -11.00784 -10.83125 -10.38269 -10.22567 -9.93380 -9.75652 -9.74759 -9.58587 -9.23561 -8.75872 -8.73095 -6.93600 -5.73612 -3.16047 1.93809 2.29483 2.35714 2.80944 3.12439 3.31060 3.37667 3.41869 3.43249 3.44222 3.69160 4.21117 4.38687 4.59805 4.60748 4.70205 4.81914 4.93638 5.02545 5.27558 5.40323 5.60893 5.63730 5.65217 5.84732 6.08023 6.18119 6.46982 6.67458 6.83361 6.92328 7.30300 7.50681 7.65087 7.72141 7.82126 8.07788 8.23976 8.44064 9.12527 9.72985 10.35413 11.30596 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024754 B = 0.001965 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.860855 B =14243.371353 C =14890.211503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.011 4.011 3 Si 0.918 3.082 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.223 4.223 8 H 0.080 0.920 9 N -0.600 5.600 10 C 0.129 3.871 11 C 0.067 3.933 12 H 0.062 0.938 13 O -0.566 6.566 14 C 0.144 3.856 15 H 0.100 0.900 16 N -0.717 5.717 17 C 0.510 3.490 18 O -0.497 6.497 19 C -0.162 4.162 20 C 0.521 3.479 21 O -0.478 6.478 22 N -0.739 5.739 23 C 0.080 3.920 24 C 0.449 3.551 25 F -0.179 7.179 26 F -0.178 7.178 27 F -0.173 7.173 28 C 0.130 3.870 29 H 0.254 0.746 30 H 0.113 0.887 31 H 0.025 0.975 32 H 0.377 0.623 33 H 0.397 0.603 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.406 0.594 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.030 0.970 40 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.144 -24.095 9.092 25.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.206 4.206 3 Si 0.749 3.251 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.351 4.351 8 H 0.098 0.902 9 N -0.328 5.328 10 C 0.003 3.997 11 C 0.007 3.993 12 H 0.080 0.920 13 O -0.370 6.370 14 C 0.039 3.961 15 H 0.118 0.882 16 N -0.369 5.369 17 C 0.293 3.707 18 O -0.369 6.369 19 C -0.205 4.205 20 C 0.305 3.695 21 O -0.347 6.347 22 N -0.397 5.397 23 C -0.046 4.046 24 C 0.394 3.606 25 F -0.160 7.160 26 F -0.160 7.160 27 F -0.155 7.155 28 C 0.003 3.997 29 H 0.065 0.935 30 H 0.130 0.870 31 H 0.043 0.957 32 H 0.224 0.776 33 H 0.231 0.769 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.241 0.759 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.048 0.952 40 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 3.898 -24.193 6.997 25.484 hybrid contribution 0.009 0.867 1.465 1.702 sum 3.907 -23.326 8.462 25.119 Atomic orbital electron populations 1.69720 1.04943 1.25096 1.57592 1.24802 0.95790 0.97842 1.02204 0.86093 0.78383 0.82687 0.77983 1.21092 1.21518 1.21094 1.19061 0.90589 0.82139 1.43283 0.90249 1.44284 1.01487 0.99806 1.87229 1.22585 0.85542 0.91913 0.99613 1.23663 0.82671 0.96082 0.96923 0.92048 1.86416 1.15572 1.58757 1.76277 1.21993 0.94008 0.85021 0.95081 0.88167 1.45929 1.59457 1.18172 1.13338 1.19792 0.79049 0.83153 0.88665 1.90876 1.50470 1.79318 1.16233 1.21567 1.03635 0.95122 1.00219 1.20084 0.79458 0.81690 0.88243 1.90924 1.52174 1.76794 1.14853 1.45713 1.61721 1.18467 1.13776 1.22406 1.02169 0.86235 0.93741 1.20569 0.74843 0.84851 0.80313 1.93232 1.47556 1.87721 1.87505 1.93234 1.73178 1.89154 1.60405 1.93233 1.81024 1.64564 1.76658 1.21632 0.93742 0.85327 0.99026 0.93536 0.86961 0.95688 0.77597 0.76940 0.85773 0.85682 0.75871 0.86686 0.86724 0.95209 0.94822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.21 10.09 55.49 0.56 -25.65 16 2 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 3 Si 0.92 21.75 29.55 -169.99 -5.02 16.73 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.22 -6.14 10.27 -15.06 -0.15 -6.29 16 8 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 9 N -0.60 -15.24 3.40 -169.93 -0.58 -15.82 16 10 C 0.13 3.04 5.63 -2.41 -0.01 3.03 16 11 C 0.07 1.22 4.06 -24.46 -0.10 1.12 16 12 H 0.06 1.01 8.00 -51.93 -0.42 0.59 16 13 O -0.57 -9.41 13.48 -35.23 -0.47 -9.89 16 14 C 0.14 2.67 3.00 -66.09 -0.20 2.47 16 15 H 0.10 2.12 7.62 -51.93 -0.40 1.73 16 16 N -0.72 -10.00 5.12 -52.03 -0.27 -10.27 16 17 C 0.51 7.36 7.82 -10.99 -0.09 7.27 16 18 O -0.50 -9.91 13.86 -18.96 -0.26 -10.17 16 19 C -0.16 -1.34 6.19 -29.04 -0.18 -1.52 16 20 C 0.52 5.45 7.82 -10.98 -0.09 5.36 16 21 O -0.48 -7.68 14.18 -18.96 -0.27 -7.95 16 22 N -0.74 -4.83 5.42 -60.29 -0.33 -5.15 16 23 C 0.08 0.49 5.64 -4.04 -0.02 0.47 16 24 C 0.45 2.64 3.11 37.16 0.12 2.75 16 25 F -0.18 -1.15 17.18 2.25 0.04 -1.11 16 26 F -0.18 -1.16 17.18 2.25 0.04 -1.12 16 27 F -0.17 -1.18 17.32 2.25 0.04 -1.15 16 28 C 0.13 2.80 7.00 -3.06 -0.02 2.78 16 29 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.11 2.88 5.87 -51.93 -0.30 2.57 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.38 4.71 9.12 45.56 0.42 5.12 16 33 H 0.40 4.12 8.54 -40.82 -0.35 3.77 16 34 H 0.12 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.13 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.41 1.52 8.36 -40.82 -0.34 1.18 16 37 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.03 0.62 8.03 -51.93 -0.42 0.20 16 40 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 354.65 15.07 5.34 5.34 Total: -1.00 -37.20 354.65 -5.91 -43.11 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -3.89 Total: 6.05 kcal Atomic # 6 Polarization: 17.88 SS G_CDS: -0.84 Total: 17.03 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: -0.61 Total: -56.89 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -1.01 Total: -28.01 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.12 Total: -3.38 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -37.20 -5.91 -43.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197343206.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -193.041 kcal (2) G-P(sol) polarization free energy of solvation -37.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds