Wall clock time and date at job start Tue Mar 31 2020 22:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86795 * 120.00104 * 2 1 4 4 H 1.48501 * 109.47199 * 239.99824 * 3 2 1 5 5 H 1.48504 * 109.47387 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47267 * 119.99761 * 3 2 1 7 7 C 1.38812 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99916 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00244 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64823 * 0.03914 * 9 7 2 11 11 C 1.55121 * 104.94383 * 203.96948 * 10 9 7 12 12 H 1.08995 * 110.93985 * 81.21102 * 11 10 9 13 13 O 1.42898 * 111.16086 * 205.12988 * 11 10 9 14 14 C 1.55163 * 101.48384 * 323.22061 * 11 10 9 15 15 H 1.08997 * 110.71704 * 276.83437 * 14 11 10 16 16 N 1.46499 * 110.71887 * 153.73674 * 14 11 10 17 17 C 1.34779 * 119.99872 * 157.44181 * 16 14 11 18 18 O 1.21286 * 120.00040 * 359.97438 * 17 16 14 19 19 C 1.50695 * 119.99727 * 179.97438 * 17 16 14 20 20 C 1.50701 * 109.46848 * 179.97438 * 19 17 16 21 21 O 1.21279 * 120.00251 * 0.02562 * 20 19 17 22 22 N 1.34777 * 120.00115 * 180.02562 * 20 19 17 23 23 C 1.46500 * 120.00376 * 180.02562 * 22 20 19 24 24 C 1.52997 * 109.47473 * 180.02562 * 23 22 20 25 25 F 1.39905 * 109.47157 * 59.99740 * 24 23 22 26 26 F 1.39900 * 109.47010 * 300.00131 * 24 23 22 27 27 F 1.39897 * 109.47422 * 179.97438 * 24 23 22 28 28 C 1.47019 * 125.64877 * 179.97438 * 9 7 2 29 29 H 0.97002 * 119.99878 * 0.02562 * 1 2 3 30 30 H 1.09007 * 110.36275 * 322.93264 * 10 9 7 31 31 H 1.09000 * 110.37004 * 85.14145 * 10 9 7 32 32 H 0.96694 * 113.99956 * 292.16227 * 13 11 10 33 33 H 0.97000 * 119.99832 * 337.43426 * 16 14 11 34 34 H 1.09002 * 109.47002 * 60.00392 * 19 17 16 35 35 H 1.09001 * 109.47545 * 299.99600 * 19 17 16 36 36 H 0.97004 * 120.00228 * 0.02562 * 22 20 19 37 37 H 1.09002 * 109.47129 * 59.99747 * 23 22 20 38 38 H 1.09001 * 109.46596 * 300.00102 * 23 22 20 39 39 H 1.09000 * 109.88206 * 59.56138 * 28 9 7 40 40 H 1.08997 * 109.88616 * 298.39462 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1416 -2.5332 -0.0008 11 6 -0.4055 -3.9351 0.6086 12 1 -0.3597 -3.9015 1.6971 13 8 -1.6580 -4.4622 0.1666 14 6 0.7783 -4.7525 0.0271 15 1 0.5488 -5.1004 -0.9800 16 7 1.1076 -5.8812 0.9011 17 6 1.7580 -6.9515 0.4033 18 8 2.0702 -6.9805 -0.7683 19 6 2.0971 -8.1123 1.3024 20 6 2.8167 -9.1706 0.5066 21 8 3.0332 -8.9989 -0.6743 22 7 3.2197 -10.3079 1.1072 23 6 3.9197 -11.3364 0.3337 24 6 4.2628 -12.5156 1.2462 25 9 3.0851 -13.0524 1.7774 26 9 5.0858 -12.0748 2.2881 27 9 4.9308 -13.4980 0.5075 28 6 1.9317 -3.7275 0.0005 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5999 -1.7587 0.6143 31 1 -0.5267 -2.4850 -1.0194 32 1 -2.4273 -3.9838 0.5045 33 1 0.8576 -5.8581 1.8381 34 1 1.1800 -8.5308 1.7170 35 1 2.7388 -7.7682 2.1137 36 1 3.0462 -10.4454 2.0516 37 1 4.8370 -10.9181 -0.0806 38 1 3.2782 -11.6801 -0.4778 39 1 2.5577 -3.8510 0.8843 40 1 2.5286 -3.8642 -0.9011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197343206.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:46 Heat of formation + Delta-G solvation = -267.762070 kcal Electronic energy + Delta-G solvation = -29205.690575 eV Core-core repulsion = 24219.479920 eV Total energy + Delta-G solvation = -4986.210655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.20138 -48.71970 -48.67413 -41.46937 -40.33269 -39.07582 -36.67370 -36.14145 -35.44695 -33.70316 -32.30793 -30.38205 -29.59122 -28.47559 -26.32522 -24.47884 -22.81494 -22.35434 -21.68713 -21.28154 -19.66453 -19.48906 -19.29735 -18.99018 -18.56011 -18.07029 -17.39351 -17.08610 -16.94609 -16.64186 -16.23016 -15.92986 -15.62800 -15.54011 -15.37952 -15.22707 -15.10551 -14.83852 -14.82114 -14.79316 -14.46830 -14.41709 -14.28118 -13.95889 -13.70433 -13.20116 -13.11711 -12.97830 -12.95261 -12.71217 -12.69665 -12.09781 -11.91874 -11.41091 -11.32665 -11.01500 -10.76675 -10.54474 -10.41431 -10.09700 -8.97142 -7.81831 -5.28239 1.35215 1.47342 1.50703 1.55088 1.56888 1.72547 1.75237 2.28701 2.48150 2.64013 2.95592 3.10401 3.16410 3.29327 3.47066 3.65495 3.80839 3.99153 4.09817 4.11437 4.23454 4.32409 4.42309 4.44822 4.47728 4.63678 4.85962 4.99465 5.04798 5.38379 5.44161 5.51730 5.68742 6.21788 6.29116 6.62581 6.89601 7.05146 7.12873 7.39530 7.69342 8.31550 9.19584 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024754 B = 0.001965 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.860855 B =14243.371353 C =14890.211503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.062 4.062 3 Si 0.984 3.016 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.272 1.272 7 C -0.245 4.245 8 H 0.080 0.920 9 N -0.620 5.620 10 C 0.131 3.869 11 C 0.094 3.906 12 H 0.094 0.906 13 O -0.568 6.568 14 C 0.157 3.843 15 H 0.068 0.932 16 N -0.701 5.701 17 C 0.503 3.497 18 O -0.559 6.559 19 C -0.147 4.147 20 C 0.518 3.482 21 O -0.544 6.544 22 N -0.719 5.719 23 C 0.079 3.921 24 C 0.460 3.540 25 F -0.179 7.179 26 F -0.179 7.179 27 F -0.179 7.179 28 C 0.131 3.869 29 H 0.251 0.749 30 H 0.092 0.908 31 H -0.014 1.014 32 H 0.397 0.603 33 H 0.420 0.580 34 H 0.172 0.828 35 H 0.170 0.830 36 H 0.423 0.577 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.046 0.954 40 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.200 -25.366 11.966 28.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.255 4.255 3 Si 0.811 3.189 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.197 1.197 7 C -0.373 4.373 8 H 0.098 0.902 9 N -0.347 5.347 10 C 0.005 3.995 11 C 0.033 3.967 12 H 0.112 0.888 13 O -0.376 6.376 14 C 0.050 3.950 15 H 0.086 0.914 16 N -0.355 5.355 17 C 0.289 3.711 18 O -0.435 6.435 19 C -0.189 4.189 20 C 0.305 3.695 21 O -0.418 6.418 22 N -0.377 5.377 23 C -0.047 4.047 24 C 0.406 3.594 25 F -0.161 7.161 26 F -0.161 7.161 27 F -0.160 7.160 28 C 0.004 3.996 29 H 0.060 0.940 30 H 0.110 0.890 31 H 0.004 0.996 32 H 0.248 0.752 33 H 0.258 0.742 34 H 0.189 0.811 35 H 0.188 0.812 36 H 0.262 0.738 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.064 0.936 40 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 3.936 -25.522 9.980 27.685 hybrid contribution -0.010 1.205 0.545 1.323 sum 3.925 -24.316 10.526 26.786 Atomic orbital electron populations 1.69949 1.06091 1.25465 1.58049 1.25637 0.96750 1.00941 1.02131 0.85083 0.77157 0.78459 0.78182 1.21036 1.21601 1.19745 1.19404 0.91033 0.83449 1.43463 0.90214 1.44551 1.02463 1.00614 1.87091 1.22432 0.84556 0.95046 0.97433 1.23270 0.83231 0.92210 0.97959 0.88798 1.86391 1.15771 1.58686 1.76751 1.21441 0.93009 0.85718 0.94792 0.91386 1.45685 1.59254 1.16742 1.13840 1.20879 0.77412 0.84110 0.88681 1.90872 1.52673 1.80547 1.19396 1.21620 1.06356 0.91822 0.99083 1.20504 0.78861 0.82589 0.87583 1.90920 1.54989 1.78222 1.17715 1.45483 1.60348 1.17351 1.14524 1.22426 1.02227 0.86194 0.93862 1.20376 0.74626 0.84454 0.79977 1.93234 1.47583 1.87744 1.87491 1.93234 1.73262 1.89140 1.60458 1.93226 1.81155 1.64775 1.76842 1.21692 0.94819 0.84753 0.98298 0.93955 0.89018 0.99585 0.75247 0.74223 0.81095 0.81236 0.73824 0.86731 0.86636 0.93597 0.97507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.66 10.09 21.65 0.22 -54.44 16 2 C -0.06 -3.44 5.49 84.86 0.47 -2.98 16 3 Si 0.98 44.93 29.55 68.60 2.03 46.96 16 4 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 5 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 7 C -0.24 -13.73 10.27 84.03 0.86 -12.87 16 8 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 9 N -0.62 -32.13 3.40 -691.55 -2.35 -34.48 16 10 C 0.13 6.31 5.63 86.93 0.49 6.80 16 11 C 0.09 3.29 4.06 32.06 0.13 3.42 16 12 H 0.09 2.76 8.00 -2.39 -0.02 2.74 16 13 O -0.57 -17.98 13.48 -148.98 -2.01 -19.99 16 14 C 0.16 5.78 3.00 46.18 0.14 5.92 16 15 H 0.07 2.98 7.62 -2.39 -0.02 2.96 16 16 N -0.70 -17.87 5.12 -436.91 -2.24 -20.11 16 17 C 0.50 13.61 7.82 87.65 0.69 14.30 16 18 O -0.56 -22.72 13.86 20.39 0.28 -22.44 16 19 C -0.15 -1.82 6.19 29.10 0.18 -1.64 16 20 C 0.52 9.79 7.82 87.66 0.69 10.47 16 21 O -0.54 -17.61 14.18 20.41 0.29 -17.32 16 22 N -0.72 -7.49 5.42 -463.06 -2.51 -10.00 16 23 C 0.08 0.85 5.64 86.38 0.49 1.34 16 24 C 0.46 4.57 3.11 71.98 0.22 4.79 16 25 F -0.18 -1.90 17.18 44.97 0.77 -1.13 16 26 F -0.18 -1.95 17.18 44.97 0.77 -1.18 16 27 F -0.18 -2.21 17.32 44.97 0.78 -1.44 16 28 C 0.13 5.74 7.00 86.73 0.61 6.35 16 29 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 30 H 0.09 4.80 5.87 -2.38 -0.01 4.79 16 31 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 32 H 0.40 9.08 9.12 -74.06 -0.68 8.41 16 33 H 0.42 6.87 8.54 -92.71 -0.79 6.08 16 34 H 0.17 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.17 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.42 1.52 8.36 -92.71 -0.78 0.74 16 37 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.05 1.86 8.03 -2.39 -0.02 1.84 16 40 H 0.01 0.33 8.14 -2.39 -0.02 0.32 16 Total: -1.00 -86.79 354.65 -0.10 -86.89 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -1.10 Total: 12.76 kcal Atomic # 6 Polarization: 30.94 SS G_CDS: 4.96 Total: 35.90 kcal Atomic # 7 Polarization: -112.16 SS G_CDS: -6.87 Total: -119.03 kcal Atomic # 8 Polarization: -58.31 SS G_CDS: -1.44 Total: -59.75 kcal Atomic # 9 Polarization: -6.06 SS G_CDS: 2.32 Total: -3.74 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -86.79 -0.10 -86.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197343206.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.867 kcal (2) G-P(sol) polarization free energy of solvation -86.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -267.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -267.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds