Wall clock time and date at job start Tue Mar 31 2020 22:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86802 * 119.99719 * 2 1 4 4 H 1.48507 * 109.47083 * 239.99682 * 3 2 1 5 5 H 1.48501 * 109.47170 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47036 * 120.00048 * 3 2 1 7 7 C 1.38951 * 120.00234 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00036 * 179.97438 * 7 2 1 9 9 N 1.37093 * 119.99898 * 0.02562 * 7 2 1 10 10 C 1.34782 * 119.99997 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99965 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99837 * 179.97438 * 10 9 7 13 13 N 1.46896 * 109.46676 * 179.97438 * 12 10 9 14 14 C 1.46906 * 110.99865 * 179.97438 * 13 12 10 15 15 C 1.53044 * 109.46037 * 154.99947 * 14 13 12 16 16 C 1.53189 * 109.31014 * 181.38516 * 15 14 13 17 17 N 1.46923 * 108.77922 * 305.36447 * 16 15 14 18 18 C 1.34772 * 120.63240 * 233.59052 * 17 16 15 19 19 O 1.21568 * 119.99867 * 7.86283 * 18 17 16 20 20 C 1.47751 * 120.00175 * 187.86693 * 18 17 16 21 21 C 1.39350 * 124.12080 * 187.66014 * 20 18 17 22 22 N 1.30082 * 112.15085 * 179.97438 * 21 20 18 23 23 S 1.55926 * 108.75296 * 359.97438 * 22 21 20 24 24 N 1.31488 * 124.11666 * 7.63063 * 20 18 17 25 25 C 1.46931 * 118.73628 * 53.85916 * 17 16 15 26 26 C 1.53042 * 109.45728 * 275.06801 * 14 13 12 27 27 H 0.96996 * 120.00224 * 0.02562 * 1 2 3 28 28 H 0.97003 * 120.00291 * 359.97438 * 9 7 2 29 29 H 1.08990 * 109.47297 * 59.99873 * 12 10 9 30 30 H 1.09001 * 109.47005 * 299.99346 * 12 10 9 31 31 H 1.00899 * 111.00105 * 303.94819 * 13 12 10 32 32 H 1.08996 * 109.45603 * 35.02587 * 14 13 12 33 33 H 1.09001 * 109.49792 * 61.43259 * 15 14 13 34 34 H 1.08999 * 109.49472 * 301.33643 * 15 14 13 35 35 H 1.09006 * 109.58347 * 185.57559 * 16 15 14 36 36 H 1.09000 * 109.70336 * 65.22220 * 16 15 14 37 37 H 1.08004 * 123.92218 * 359.93728 * 21 20 18 38 38 H 1.08993 * 109.58502 * 65.93301 * 25 17 16 39 39 H 1.09002 * 109.58361 * 186.35528 * 25 17 16 40 40 H 1.08997 * 109.49376 * 298.56318 * 26 14 13 41 41 H 1.08992 * 109.50041 * 58.66350 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1017 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2439 -4.8629 0.0022 13 7 2.1985 -5.9794 0.0027 14 6 1.4983 -7.2708 0.0039 15 6 2.4047 -8.3429 -0.6055 16 6 1.6586 -9.6805 -0.6343 17 7 1.1876 -9.9887 0.7228 18 6 1.4874 -11.1679 1.3025 19 8 2.2687 -11.9283 0.7647 20 6 0.8665 -11.5365 2.5915 21 6 1.2256 -12.6554 3.3405 22 7 0.5304 -12.7565 4.4353 23 16 -0.4691 -11.5618 4.5066 24 7 -0.0919 -10.8484 3.1720 25 6 0.3786 -8.9893 1.4338 26 6 1.1437 -7.6571 1.4416 27 1 -0.4850 0.8400 -0.0004 28 1 0.3534 -2.3907 0.0005 29 1 0.6176 -4.9213 -0.8879 30 1 0.6169 -4.9201 0.8920 31 1 2.8333 -5.9127 -0.7788 32 1 0.5852 -7.1892 -0.5858 33 1 3.3069 -8.4424 -0.0020 34 1 2.6758 -8.0555 -1.6214 35 1 2.3319 -10.4672 -0.9749 36 1 0.8061 -9.6113 -1.3100 37 1 1.9917 -13.3574 3.0459 38 1 -0.5763 -8.8625 0.9239 39 1 0.2071 -9.3198 2.4583 40 1 2.0578 -7.7632 2.0257 41 1 0.5173 -6.8819 1.8828 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199478654.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:38 Heat of formation + Delta-G solvation = 8.301098 kcal Electronic energy + Delta-G solvation = -26307.683464 eV Core-core repulsion = 22350.346169 eV Total energy + Delta-G solvation = -3957.337295 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.71042 -39.87769 -38.47645 -37.66303 -35.30356 -34.15226 -33.81266 -31.54710 -31.22696 -30.98092 -28.09940 -26.78955 -24.88191 -23.81367 -23.71502 -22.38190 -20.86109 -19.98664 -19.63327 -19.16528 -17.88918 -17.44894 -16.71431 -16.51946 -16.04238 -15.74833 -15.33619 -15.22968 -14.80839 -14.52422 -14.37775 -13.98377 -13.87988 -13.71443 -13.45937 -13.02350 -12.74553 -12.44106 -12.20964 -12.11777 -11.80797 -11.71761 -11.61973 -11.53301 -11.34781 -11.24374 -11.03011 -10.71329 -10.54233 -10.45002 -10.22125 -10.05907 -9.68491 -9.50998 -8.97738 -8.46009 -8.08694 -7.96985 -6.42642 -3.83485 -0.06839 0.92235 1.10867 1.15525 2.56353 2.71044 3.19440 3.25092 3.29598 3.88552 3.90547 4.05708 4.16857 4.27548 4.63125 4.64931 4.71487 4.89651 5.02429 5.03434 5.10984 5.20033 5.25143 5.33083 5.47365 5.53150 5.66962 5.70312 5.77035 5.86707 5.93145 5.96572 6.04283 6.19690 6.26382 6.32538 6.97724 7.22820 7.54126 7.65229 7.65479 8.05252 8.60393 9.16928 9.53293 10.04901 10.75036 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021333 B = 0.002007 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.187831 B =13947.522007 C =14815.769512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.102 0.898 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.583 6.583 12 C 0.051 3.949 13 N -0.665 5.665 14 C 0.087 3.913 15 C -0.135 4.135 16 C 0.116 3.884 17 N -0.588 5.588 18 C 0.604 3.396 19 O -0.527 6.527 20 C 0.015 3.985 21 C 0.090 3.910 22 N -0.574 5.574 23 S 0.708 5.292 24 N -0.537 5.537 25 C 0.084 3.916 26 C -0.123 4.123 27 H 0.272 0.728 28 H 0.392 0.608 29 H 0.043 0.957 30 H 0.085 0.915 31 H 0.351 0.649 32 H 0.044 0.956 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.215 0.785 38 H 0.069 0.931 39 H 0.132 0.868 40 H 0.073 0.927 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.588 -24.484 5.196 25.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.467 6.467 12 C -0.081 4.081 13 N -0.298 5.298 14 C -0.024 4.024 15 C -0.174 4.174 16 C -0.007 4.007 17 N -0.320 5.320 18 C 0.386 3.614 19 O -0.403 6.403 20 C -0.159 4.159 21 C -0.103 4.103 22 N -0.415 5.415 23 S 0.752 5.248 24 N -0.387 5.387 25 C -0.040 4.040 26 C -0.162 4.162 27 H 0.082 0.918 28 H 0.225 0.775 29 H 0.061 0.939 30 H 0.103 0.897 31 H 0.171 0.829 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.115 0.885 36 H 0.091 0.909 37 H 0.231 0.769 38 H 0.088 0.912 39 H 0.149 0.851 40 H 0.092 0.908 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.828 -24.253 7.087 25.930 hybrid contribution 0.563 0.597 -2.146 2.298 sum -5.266 -23.656 4.940 24.733 Atomic orbital electron populations 1.69599 1.05931 1.28268 1.50569 1.25261 0.95641 0.99725 0.97317 0.85916 0.78762 0.80442 0.79090 1.19918 1.20979 1.19872 1.19652 0.93343 0.82253 1.47679 0.87990 1.41863 1.09183 1.04610 1.64400 1.19823 0.88395 0.84728 0.84484 1.90524 1.13776 1.87065 1.55365 1.21714 0.94366 0.90993 1.01063 1.60080 1.18746 0.99531 1.51419 1.21522 0.95575 0.89336 0.95928 1.22098 0.99524 0.93751 1.02023 1.21706 0.99326 0.97883 0.81767 1.47922 1.51966 1.15436 1.16651 1.16814 0.80798 0.81901 0.81901 1.90826 1.34586 1.51396 1.63508 1.22537 0.97562 0.95506 1.00299 1.23778 1.00347 0.97980 0.88201 1.72262 1.14626 1.29300 1.25328 1.79318 1.29118 1.02030 1.14321 1.72816 1.18710 1.32174 1.15018 1.22821 0.93136 0.87556 1.00521 1.22040 1.01178 0.95695 0.97246 0.91820 0.77475 0.93916 0.89696 0.82928 0.93816 0.90215 0.90321 0.88459 0.90941 0.76908 0.91244 0.85143 0.90813 0.90404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.41 13.05 55.50 0.72 -23.69 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.00 29.55 -169.99 -5.02 15.98 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 9 N -0.56 -14.21 5.29 -10.96 -0.06 -14.27 16 10 C 0.44 10.31 7.82 -10.98 -0.09 10.23 16 11 O -0.58 -15.81 15.78 5.55 0.09 -15.72 16 12 C 0.05 0.88 5.96 -4.98 -0.03 0.85 16 13 N -0.66 -10.39 5.93 -107.95 -0.64 -11.03 16 14 C 0.09 1.01 2.45 -67.66 -0.17 0.85 16 15 C -0.14 -1.38 5.36 -26.61 -0.14 -1.52 16 16 C 0.12 1.07 6.44 -3.71 -0.02 1.05 16 17 N -0.59 -5.95 2.97 -173.65 -0.52 -6.46 16 18 C 0.60 6.62 7.67 -12.37 -0.09 6.53 16 19 O -0.53 -6.89 16.25 5.31 0.09 -6.80 16 20 C 0.02 0.14 6.57 -83.71 -0.55 -0.41 16 21 C 0.09 0.73 11.23 -17.88 -0.20 0.53 16 22 N -0.57 -4.68 11.41 19.42 0.22 -4.45 16 23 S 0.71 4.37 23.69 -107.50 -2.55 1.82 16 24 N -0.54 -4.44 7.72 23.18 0.18 -4.26 16 25 C 0.08 0.79 6.06 -3.48 -0.02 0.77 16 26 C -0.12 -1.36 5.60 -26.38 -0.15 -1.50 16 27 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 29 H 0.04 0.66 8.05 -51.93 -0.42 0.24 16 30 H 0.08 1.35 7.41 -51.93 -0.38 0.96 16 31 H 0.35 5.67 8.03 -39.29 -0.32 5.36 16 32 H 0.04 0.49 7.80 -51.93 -0.40 0.08 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 35 H 0.10 0.94 7.00 -51.93 -0.36 0.58 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.21 1.36 8.06 -52.48 -0.42 0.94 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.13 1.21 4.14 -67.19 -0.28 0.93 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.08 0.87 7.42 -51.93 -0.39 0.49 16 LS Contribution 355.25 15.07 5.35 5.35 Total: -1.00 -33.18 355.25 -8.75 -41.93 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -4.92 Total: 12.22 kcal Atomic # 6 Polarization: 11.09 SS G_CDS: -1.70 Total: 9.38 kcal Atomic # 7 Polarization: -64.07 SS G_CDS: -0.09 Total: -64.16 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: 0.17 Total: -22.52 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 4.37 SS G_CDS: -2.55 Total: 1.82 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.18 -8.75 -41.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199478654.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.236 kcal (2) G-P(sol) polarization free energy of solvation -33.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds