Wall clock time and date at job start Tue Mar 31 2020 22:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86802 * 119.99719 * 2 1 4 4 H 1.48507 * 109.47083 * 239.99682 * 3 2 1 5 5 H 1.48501 * 109.47170 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47036 * 120.00048 * 3 2 1 7 7 C 1.38951 * 120.00234 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00036 * 179.97438 * 7 2 1 9 9 N 1.37093 * 119.99898 * 0.02562 * 7 2 1 10 10 C 1.34782 * 119.99997 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99965 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99837 * 179.97438 * 10 9 7 13 13 N 1.46896 * 109.46676 * 179.97438 * 12 10 9 14 14 C 1.46906 * 110.99865 * 179.97438 * 13 12 10 15 15 C 1.53044 * 109.46037 * 154.99947 * 14 13 12 16 16 C 1.53189 * 109.31014 * 181.38516 * 15 14 13 17 17 N 1.46923 * 108.77922 * 305.36447 * 16 15 14 18 18 C 1.34772 * 120.63240 * 233.59052 * 17 16 15 19 19 O 1.21568 * 119.99867 * 7.86283 * 18 17 16 20 20 C 1.47751 * 120.00175 * 187.86693 * 18 17 16 21 21 C 1.39350 * 124.12080 * 187.66014 * 20 18 17 22 22 N 1.30082 * 112.15085 * 179.97438 * 21 20 18 23 23 S 1.55926 * 108.75296 * 359.97438 * 22 21 20 24 24 N 1.31488 * 124.11666 * 7.63063 * 20 18 17 25 25 C 1.46931 * 118.73628 * 53.85916 * 17 16 15 26 26 C 1.53042 * 109.45728 * 275.06801 * 14 13 12 27 27 H 0.96996 * 120.00224 * 0.02562 * 1 2 3 28 28 H 0.97003 * 120.00291 * 359.97438 * 9 7 2 29 29 H 1.08990 * 109.47297 * 59.99873 * 12 10 9 30 30 H 1.09001 * 109.47005 * 299.99346 * 12 10 9 31 31 H 1.00899 * 111.00105 * 303.94819 * 13 12 10 32 32 H 1.08996 * 109.45603 * 35.02587 * 14 13 12 33 33 H 1.09001 * 109.49792 * 61.43259 * 15 14 13 34 34 H 1.08999 * 109.49472 * 301.33643 * 15 14 13 35 35 H 1.09006 * 109.58347 * 185.57559 * 16 15 14 36 36 H 1.09000 * 109.70336 * 65.22220 * 16 15 14 37 37 H 1.08004 * 123.92218 * 359.93728 * 21 20 18 38 38 H 1.08993 * 109.58502 * 65.93301 * 25 17 16 39 39 H 1.09002 * 109.58361 * 186.35528 * 25 17 16 40 40 H 1.08997 * 109.49376 * 298.56318 * 26 14 13 41 41 H 1.08992 * 109.50041 * 58.66350 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1017 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2439 -4.8629 0.0022 13 7 2.1985 -5.9794 0.0027 14 6 1.4983 -7.2708 0.0039 15 6 2.4047 -8.3429 -0.6055 16 6 1.6586 -9.6805 -0.6343 17 7 1.1876 -9.9887 0.7228 18 6 1.4874 -11.1679 1.3025 19 8 2.2687 -11.9283 0.7647 20 6 0.8665 -11.5365 2.5915 21 6 1.2256 -12.6554 3.3405 22 7 0.5304 -12.7565 4.4353 23 16 -0.4691 -11.5618 4.5066 24 7 -0.0919 -10.8484 3.1720 25 6 0.3786 -8.9893 1.4338 26 6 1.1437 -7.6571 1.4416 27 1 -0.4850 0.8400 -0.0004 28 1 0.3534 -2.3907 0.0005 29 1 0.6176 -4.9213 -0.8879 30 1 0.6169 -4.9201 0.8920 31 1 2.8333 -5.9127 -0.7788 32 1 0.5852 -7.1892 -0.5858 33 1 3.3069 -8.4424 -0.0020 34 1 2.6758 -8.0555 -1.6214 35 1 2.3319 -10.4672 -0.9749 36 1 0.8061 -9.6113 -1.3100 37 1 1.9917 -13.3574 3.0459 38 1 -0.5763 -8.8625 0.9239 39 1 0.2071 -9.3198 2.4583 40 1 2.0578 -7.7632 2.0257 41 1 0.5173 -6.8819 1.8828 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199478654.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:37 Heat of formation + Delta-G solvation = -17.605970 kcal Electronic energy + Delta-G solvation = -26308.806879 eV Core-core repulsion = 22350.346169 eV Total energy + Delta-G solvation = -3958.460710 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.37815 -40.69323 -40.10818 -38.78283 -36.43680 -35.81640 -34.76475 -33.28772 -32.39060 -31.96531 -28.94026 -28.11754 -26.33399 -24.91002 -24.61262 -23.22153 -21.69473 -21.09564 -20.57515 -20.32518 -19.88149 -18.25069 -17.86071 -17.30473 -17.20511 -16.80467 -16.45072 -16.37651 -16.14253 -15.86259 -15.54230 -15.28614 -15.06622 -14.91262 -14.49774 -14.10880 -13.87266 -13.52330 -13.38423 -13.29639 -13.17691 -12.90510 -12.71611 -12.43499 -12.42775 -12.32781 -12.22272 -12.12344 -12.06193 -11.55062 -11.49869 -11.42987 -10.80979 -10.33369 -10.27075 -10.01468 -9.75600 -9.31564 -8.46391 -5.95070 -0.69532 0.33561 0.44530 0.61279 1.39933 1.41964 1.52720 1.82228 1.95296 2.05827 2.29347 2.89874 3.20904 3.22954 3.49046 3.50391 3.79643 3.89613 4.00375 4.09329 4.23725 4.32100 4.34856 4.45244 4.47572 4.53198 4.62359 4.64848 4.75790 4.84218 4.92559 5.07236 5.16172 5.29487 5.34650 5.41156 5.50908 5.91835 6.13749 6.20091 6.42276 6.60697 6.86322 7.12947 7.56754 8.12324 8.70709 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021333 B = 0.002007 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.187831 B =13947.522007 C =14815.769512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.013 4.013 3 Si 0.992 3.008 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.335 4.335 8 H 0.078 0.922 9 N -0.573 5.573 10 C 0.437 3.563 11 O -0.625 6.625 12 C 0.067 3.933 13 N -0.681 5.681 14 C 0.088 3.912 15 C -0.128 4.128 16 C 0.118 3.882 17 N -0.590 5.590 18 C 0.601 3.399 19 O -0.556 6.556 20 C -0.003 4.003 21 C 0.089 3.911 22 N -0.597 5.597 23 S 0.781 5.219 24 N -0.551 5.551 25 C 0.091 3.909 26 C -0.119 4.119 27 H 0.278 0.722 28 H 0.397 0.603 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.345 0.655 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.223 0.777 38 H 0.085 0.915 39 H 0.135 0.865 40 H 0.053 0.947 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.223 -24.838 5.533 26.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.464 4.464 8 H 0.096 0.904 9 N -0.210 5.210 10 C 0.224 3.776 11 O -0.511 6.511 12 C -0.065 4.065 13 N -0.314 5.314 14 C -0.021 4.021 15 C -0.166 4.166 16 C -0.004 4.004 17 N -0.321 5.321 18 C 0.384 3.616 19 O -0.435 6.435 20 C -0.175 4.175 21 C -0.103 4.103 22 N -0.439 5.439 23 S 0.824 5.176 24 N -0.403 5.403 25 C -0.033 4.033 26 C -0.158 4.158 27 H 0.087 0.913 28 H 0.231 0.769 29 H 0.086 0.914 30 H 0.121 0.879 31 H 0.165 0.835 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.239 0.761 38 H 0.103 0.897 39 H 0.152 0.848 40 H 0.072 0.928 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.489 -24.623 7.415 26.783 hybrid contribution 1.016 0.666 -2.152 2.471 sum -6.473 -23.957 5.263 25.368 Atomic orbital electron populations 1.69656 1.06763 1.29371 1.50231 1.26025 0.96563 1.02364 0.96285 0.85007 0.77787 0.76728 0.78926 1.19713 1.19431 1.19803 1.19615 0.92671 0.84091 1.50044 0.90437 1.41931 1.09343 1.04698 1.65056 1.20933 0.88256 0.86233 0.82141 1.90493 1.15979 1.87991 1.56679 1.21567 0.93982 0.87928 1.03034 1.60089 1.19090 1.00650 1.51538 1.21616 0.96095 0.87651 0.96722 1.22020 0.98585 0.93878 1.02164 1.21734 0.99918 0.96898 0.81885 1.48027 1.51784 1.15382 1.16907 1.17039 0.80420 0.81800 0.82326 1.90802 1.35925 1.52265 1.64486 1.22277 0.98594 0.96431 1.00247 1.23856 1.00500 0.97882 0.88019 1.72181 1.15508 1.30652 1.25555 1.79042 1.26705 0.99923 1.11924 1.72574 1.18653 1.32886 1.16139 1.22816 0.93151 0.86236 1.01101 1.21995 1.00518 0.96773 0.96497 0.91267 0.76917 0.91408 0.87868 0.83536 0.92078 0.92116 0.89196 0.88988 0.88875 0.76054 0.89691 0.84793 0.92825 0.90303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.15 13.05 21.66 0.28 -48.87 16 2 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 3 Si 0.99 42.73 29.55 68.60 2.03 44.75 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 7 C -0.33 -18.95 9.68 84.04 0.81 -18.14 16 8 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 9 N -0.57 -29.14 5.29 -306.98 -1.62 -30.76 16 10 C 0.44 20.55 7.82 87.66 0.69 21.24 16 11 O -0.62 -34.64 15.78 -3.06 -0.05 -34.69 16 12 C 0.07 2.21 5.96 85.56 0.51 2.72 16 13 N -0.68 -20.64 5.93 -495.43 -2.94 -23.58 16 14 C 0.09 1.92 2.45 44.94 0.11 2.03 16 15 C -0.13 -2.47 5.36 30.67 0.16 -2.30 16 16 C 0.12 2.03 6.44 86.36 0.56 2.58 16 17 N -0.59 -11.24 2.97 -821.58 -2.44 -13.68 16 18 C 0.60 12.88 7.67 86.76 0.67 13.54 16 19 O -0.56 -14.60 16.25 -3.93 -0.06 -14.66 16 20 C 0.00 -0.06 6.57 41.98 0.28 0.22 16 21 C 0.09 1.37 11.23 85.22 0.96 2.33 16 22 N -0.60 -8.82 11.41 -92.48 -1.06 -9.88 16 23 S 0.78 7.98 23.69 -56.49 -1.34 6.64 16 24 N -0.55 -8.14 7.72 -80.59 -0.62 -8.77 16 25 C 0.09 1.54 6.06 86.51 0.52 2.07 16 26 C -0.12 -2.46 5.60 30.82 0.17 -2.29 16 27 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 28 H 0.40 19.03 7.90 -92.71 -0.73 18.30 16 29 H 0.07 1.93 8.05 -2.39 -0.02 1.91 16 30 H 0.10 3.05 7.41 -2.39 -0.02 3.03 16 31 H 0.35 11.05 8.03 -89.69 -0.72 10.33 16 32 H 0.06 1.16 7.80 -2.39 -0.02 1.14 16 33 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.09 1.53 8.10 -2.39 -0.02 1.51 16 35 H 0.09 1.72 7.00 -2.38 -0.02 1.70 16 36 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.22 2.77 8.06 -2.91 -0.02 2.74 16 38 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.14 2.24 4.14 -32.51 -0.13 2.11 16 40 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.08 1.62 7.42 -2.39 -0.02 1.60 16 Total: -1.00 -72.02 355.25 -2.38 -74.40 By element: Atomic # 1 Polarization: 35.76 SS G_CDS: -0.47 Total: 35.29 kcal Atomic # 6 Polarization: 17.89 SS G_CDS: 5.90 Total: 23.80 kcal Atomic # 7 Polarization: -127.14 SS G_CDS: -8.39 Total: -135.53 kcal Atomic # 8 Polarization: -49.24 SS G_CDS: -0.11 Total: -49.35 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Atomic # 16 Polarization: 7.98 SS G_CDS: -1.34 Total: 6.64 kcal Total: -72.02 -2.38 -74.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199478654.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.795 kcal (2) G-P(sol) polarization free energy of solvation -72.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds