Wall clock time and date at job start Tue Mar 31 2020 22:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86807 * 119.99634 * 2 1 4 4 H 1.48498 * 109.47170 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47028 * 300.00272 * 3 2 1 6 6 H 1.48502 * 109.46980 * 60.00136 * 3 2 1 7 7 C 1.38951 * 120.00580 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00082 * 179.97438 * 7 2 1 9 9 N 1.37093 * 119.99771 * 0.02562 * 7 2 1 10 10 C 1.34776 * 119.99828 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00123 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99778 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.46653 * 180.02562 * 12 10 9 14 14 C 1.46902 * 110.99768 * 180.02562 * 13 12 10 15 15 C 1.53356 * 109.41607 * 275.12453 * 14 13 12 16 16 C 1.53189 * 109.14709 * 178.67577 * 15 14 13 17 17 N 1.46916 * 108.89876 * 54.57696 * 16 15 14 18 18 C 1.34779 * 120.63557 * 126.29314 * 17 16 15 19 19 O 1.21625 * 119.99833 * 353.51195 * 18 17 16 20 20 C 1.47171 * 120.00409 * 173.50572 * 18 17 16 21 21 C 1.38250 * 128.47519 * 156.35680 * 20 18 17 22 22 N 1.31238 * 111.88461 * 179.81295 * 21 20 18 23 23 N 1.27342 * 120.04019 * 0.53847 * 22 21 20 24 24 S 1.56637 * 109.74048 * 359.68948 * 23 22 21 25 25 C 1.46929 * 118.74087 * 306.32287 * 17 16 15 26 26 C 1.53040 * 109.46422 * 154.99663 * 14 13 12 27 27 H 0.97000 * 120.00711 * 359.97438 * 1 2 3 28 28 H 0.96998 * 120.00105 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.47292 * 60.00229 * 12 10 9 30 30 H 1.09003 * 109.46906 * 299.99608 * 12 10 9 31 31 H 1.00905 * 110.99764 * 303.94742 * 13 12 10 32 32 H 1.09008 * 109.46135 * 35.02092 * 14 13 12 33 33 H 1.08998 * 109.68099 * 58.70904 * 15 14 13 34 34 H 1.08996 * 109.47188 * 298.50800 * 15 14 13 35 35 H 1.09000 * 109.58824 * 294.71252 * 16 15 14 36 36 H 1.09006 * 109.58336 * 174.43810 * 16 15 14 37 37 H 1.07998 * 124.05258 * 359.97438 * 21 20 18 38 38 H 1.08996 * 109.59296 * 173.39400 * 25 17 16 39 39 H 1.09006 * 109.58292 * 293.67693 * 25 17 16 40 40 H 1.09000 * 109.49459 * 61.43136 * 26 14 13 41 41 H 1.09004 * 109.52048 * 301.35298 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.7080 1.3466 -0.0006 5 1 1.8891 2.3965 -1.2125 6 1 1.8892 2.3965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0016 10 6 1.9975 -3.5577 -0.0026 11 8 3.2104 -3.5576 -0.0031 12 6 1.2441 -4.8629 -0.0032 13 7 2.1988 -5.9793 -0.0037 14 6 1.4986 -7.2707 -0.0049 15 6 1.1416 -7.6584 1.4352 16 6 0.3829 -8.9892 1.4240 17 7 1.1876 -9.9897 0.7100 18 6 1.4879 -11.1694 1.2884 19 8 1.1945 -11.3684 2.4518 20 6 2.1707 -12.2169 0.5122 21 6 2.9437 -13.2651 0.9758 22 7 3.3945 -14.0117 -0.0048 23 7 3.1098 -13.7196 -1.2112 24 16 2.2093 -12.4384 -1.2469 25 6 1.6595 -9.6796 -0.6465 26 6 2.4054 -8.3419 -0.6153 27 1 -0.4851 0.8400 0.0004 28 1 0.3536 -2.3907 -0.0016 29 1 0.6171 -4.9201 -0.8930 30 1 0.6178 -4.9213 0.8870 31 1 2.8336 -5.9119 -0.7852 32 1 0.5858 -7.1884 -0.5950 33 1 0.5139 -6.8854 1.8786 34 1 2.0553 -7.7655 2.0198 35 1 -0.5735 -8.8603 0.9173 36 1 0.2120 -9.3210 2.4481 37 1 3.1496 -13.4491 2.0200 38 1 2.3329 -10.4656 -0.9879 39 1 0.8073 -9.6094 -1.3226 40 1 3.3072 -8.4423 -0.0114 41 1 2.6776 -8.0533 -1.6306 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199490716.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:16 Heat of formation + Delta-G solvation = 16.103217 kcal Electronic energy + Delta-G solvation = -26161.695460 eV Core-core repulsion = 22204.696490 eV Total energy + Delta-G solvation = -3956.998970 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.31540 -40.52452 -38.60626 -37.79537 -35.33641 -33.92808 -32.91679 -31.58190 -31.40127 -31.12805 -28.13929 -26.91970 -24.92280 -24.36660 -23.37366 -22.74108 -20.90066 -20.06503 -19.52241 -19.19445 -17.94556 -17.68288 -16.84999 -16.40501 -16.23471 -15.65041 -15.44900 -15.34560 -14.92728 -14.63324 -14.54557 -14.14246 -13.94777 -13.81717 -13.48245 -13.34709 -13.07524 -12.65149 -12.51605 -12.28293 -12.11147 -11.72553 -11.63724 -11.50997 -11.12880 -10.96096 -10.89787 -10.66319 -10.59704 -10.48682 -10.37487 -10.26513 -10.01036 -9.56195 -9.22570 -8.52021 -8.16797 -8.00631 -6.45895 -3.86774 -0.74760 0.26261 0.98410 1.52259 2.25137 2.48370 3.13395 3.24414 3.31478 3.50969 3.83781 3.85625 3.95181 4.15686 4.20302 4.24068 4.56357 4.61639 4.85362 4.86326 4.96195 5.09476 5.10096 5.18198 5.21751 5.29860 5.41789 5.53221 5.63575 5.72446 5.82448 5.89624 6.06022 6.12148 6.24789 6.71354 7.12549 7.17275 7.47451 7.51577 7.55431 8.02182 8.56570 9.13864 9.49733 10.00844 10.71794 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.031892 B = 0.001886 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.750238 B =14839.794573 C =15210.588971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.583 6.583 12 C 0.051 3.949 13 N -0.664 5.664 14 C 0.088 3.912 15 C -0.125 4.125 16 C 0.114 3.886 17 N -0.601 5.601 18 C 0.603 3.397 19 O -0.515 6.515 20 C -0.291 4.291 21 C 0.074 3.926 22 N -0.250 5.250 23 N -0.270 5.270 24 S 0.437 5.563 25 C 0.103 3.897 26 C -0.135 4.135 27 H 0.271 0.729 28 H 0.392 0.608 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.351 0.649 32 H 0.047 0.953 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.099 0.901 37 H 0.215 0.785 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.296 -23.704 -2.835 23.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.468 6.468 12 C -0.082 4.082 13 N -0.297 5.297 14 C -0.023 4.023 15 C -0.163 4.163 16 C -0.008 4.008 17 N -0.334 5.334 18 C 0.388 3.612 19 O -0.391 6.391 20 C -0.431 4.431 21 C -0.093 4.093 22 N -0.115 5.115 23 N -0.250 5.250 24 S 0.573 5.427 25 C -0.022 4.022 26 C -0.174 4.174 27 H 0.081 0.919 28 H 0.225 0.775 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.171 0.829 32 H 0.065 0.935 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.118 0.882 37 H 0.232 0.768 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.343 -24.297 -3.372 24.566 hybrid contribution -0.618 1.152 0.500 1.400 sum -1.962 -23.145 -2.872 23.405 Atomic orbital electron populations 1.69611 1.05939 1.28104 1.50608 1.25269 0.95646 0.99760 0.97297 0.85801 0.79725 0.81105 0.77725 1.19205 1.20765 1.20714 1.19751 0.93402 0.82203 1.47510 0.87860 1.41873 1.09202 1.04638 1.64290 1.19802 0.88391 0.84718 0.84588 1.90528 1.13761 1.87048 1.55419 1.21727 0.94321 0.90949 1.01160 1.60084 1.18742 0.99426 1.51434 1.21550 0.95533 0.89319 0.95868 1.22023 1.01640 0.95402 0.97273 1.21805 0.93092 0.87136 0.98721 1.47958 1.52831 1.15659 1.16989 1.16515 0.78458 0.80667 0.85570 1.90863 1.53278 1.79752 1.15225 1.28030 1.10639 1.05194 0.99282 1.24484 0.93728 0.89232 1.01847 1.70787 1.21239 1.26120 0.93324 1.78778 1.16219 1.13376 1.16657 1.82822 1.37843 1.19106 1.02929 1.22110 0.99281 0.97653 0.83185 1.22093 0.99583 0.93207 1.02524 0.91893 0.77471 0.93814 0.89597 0.82879 0.93510 0.89923 0.90365 0.90696 0.88241 0.76816 0.90941 0.89560 0.89971 0.89822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.04 13.05 55.50 0.72 -23.31 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 20.70 29.55 -169.99 -5.02 15.68 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.30 -8.18 9.68 -14.93 -0.14 -8.32 16 8 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 9 N -0.56 -13.84 5.29 -10.96 -0.06 -13.90 16 10 C 0.44 9.94 7.82 -10.98 -0.09 9.85 16 11 O -0.58 -15.36 15.78 5.55 0.09 -15.28 16 12 C 0.05 0.82 5.96 -4.97 -0.03 0.79 16 13 N -0.66 -9.43 5.93 -107.76 -0.64 -10.07 16 14 C 0.09 0.86 2.46 -67.51 -0.17 0.70 16 15 C -0.12 -1.21 5.62 -26.45 -0.15 -1.36 16 16 C 0.11 0.93 6.43 -3.72 -0.02 0.91 16 17 N -0.60 -4.88 2.97 -174.14 -0.52 -5.40 16 18 C 0.60 5.85 7.66 -12.63 -0.10 5.75 16 19 O -0.52 -6.58 16.46 5.26 0.09 -6.49 16 20 C -0.29 -2.36 6.21 -35.95 -0.22 -2.58 16 21 C 0.07 0.60 11.62 -17.80 -0.21 0.40 16 22 N -0.25 -2.46 11.54 30.36 0.35 -2.11 16 23 N -0.27 -2.53 12.51 60.35 0.75 -1.78 16 24 S 0.44 2.77 19.87 -107.50 -2.14 0.63 16 25 C 0.10 0.62 5.71 -3.71 -0.02 0.60 16 26 C -0.14 -1.04 5.36 -26.61 -0.14 -1.19 16 27 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 28 H 0.39 9.16 7.90 -40.82 -0.32 8.84 16 29 H 0.04 0.62 8.05 -51.93 -0.42 0.20 16 30 H 0.09 1.27 7.42 -51.93 -0.39 0.89 16 31 H 0.35 5.14 8.03 -39.29 -0.32 4.83 16 32 H 0.05 0.42 7.80 -51.92 -0.40 0.02 16 33 H 0.08 0.83 7.43 -51.93 -0.39 0.44 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.10 0.91 7.00 -51.93 -0.36 0.55 16 37 H 0.22 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.07 0.38 3.69 -24.33 -0.09 0.29 16 39 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 LS Contribution 355.82 15.07 5.36 5.36 Total: -1.00 -33.69 355.82 -7.12 -40.81 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -4.73 Total: 9.82 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -1.39 Total: 6.02 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: 0.61 Total: -56.56 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: 0.17 Total: -21.77 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 2.77 SS G_CDS: -2.14 Total: 0.63 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.69 -7.12 -40.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199490716.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.917 kcal (2) G-P(sol) polarization free energy of solvation -33.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds