Wall clock time and date at job start Tue Mar 31 2020 22:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86807 * 119.99634 * 2 1 4 4 H 1.48498 * 109.47170 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47028 * 300.00272 * 3 2 1 6 6 H 1.48502 * 109.46980 * 60.00136 * 3 2 1 7 7 C 1.38951 * 120.00580 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00082 * 179.97438 * 7 2 1 9 9 N 1.37093 * 119.99771 * 0.02562 * 7 2 1 10 10 C 1.34776 * 119.99828 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00123 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99778 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.46653 * 180.02562 * 12 10 9 14 14 C 1.46902 * 110.99768 * 180.02562 * 13 12 10 15 15 C 1.53356 * 109.41607 * 275.12453 * 14 13 12 16 16 C 1.53189 * 109.14709 * 178.67577 * 15 14 13 17 17 N 1.46916 * 108.89876 * 54.57696 * 16 15 14 18 18 C 1.34779 * 120.63557 * 126.29314 * 17 16 15 19 19 O 1.21625 * 119.99833 * 353.51195 * 18 17 16 20 20 C 1.47171 * 120.00409 * 173.50572 * 18 17 16 21 21 C 1.38250 * 128.47519 * 156.35680 * 20 18 17 22 22 N 1.31238 * 111.88461 * 179.81295 * 21 20 18 23 23 N 1.27342 * 120.04019 * 0.53847 * 22 21 20 24 24 S 1.56637 * 109.74048 * 359.68948 * 23 22 21 25 25 C 1.46929 * 118.74087 * 306.32287 * 17 16 15 26 26 C 1.53040 * 109.46422 * 154.99663 * 14 13 12 27 27 H 0.97000 * 120.00711 * 359.97438 * 1 2 3 28 28 H 0.96998 * 120.00105 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.47292 * 60.00229 * 12 10 9 30 30 H 1.09003 * 109.46906 * 299.99608 * 12 10 9 31 31 H 1.00905 * 110.99764 * 303.94742 * 13 12 10 32 32 H 1.09008 * 109.46135 * 35.02092 * 14 13 12 33 33 H 1.08998 * 109.68099 * 58.70904 * 15 14 13 34 34 H 1.08996 * 109.47188 * 298.50800 * 15 14 13 35 35 H 1.09000 * 109.58824 * 294.71252 * 16 15 14 36 36 H 1.09006 * 109.58336 * 174.43810 * 16 15 14 37 37 H 1.07998 * 124.05258 * 359.97438 * 21 20 18 38 38 H 1.08996 * 109.59296 * 173.39400 * 25 17 16 39 39 H 1.09006 * 109.58292 * 293.67693 * 25 17 16 40 40 H 1.09000 * 109.49459 * 61.43136 * 26 14 13 41 41 H 1.09004 * 109.52048 * 301.35298 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.7080 1.3466 -0.0006 5 1 1.8891 2.3965 -1.2125 6 1 1.8892 2.3965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0016 10 6 1.9975 -3.5577 -0.0026 11 8 3.2104 -3.5576 -0.0031 12 6 1.2441 -4.8629 -0.0032 13 7 2.1988 -5.9793 -0.0037 14 6 1.4986 -7.2707 -0.0049 15 6 1.1416 -7.6584 1.4352 16 6 0.3829 -8.9892 1.4240 17 7 1.1876 -9.9897 0.7100 18 6 1.4879 -11.1694 1.2884 19 8 1.1945 -11.3684 2.4518 20 6 2.1707 -12.2169 0.5122 21 6 2.9437 -13.2651 0.9758 22 7 3.3945 -14.0117 -0.0048 23 7 3.1098 -13.7196 -1.2112 24 16 2.2093 -12.4384 -1.2469 25 6 1.6595 -9.6796 -0.6465 26 6 2.4054 -8.3419 -0.6153 27 1 -0.4851 0.8400 0.0004 28 1 0.3536 -2.3907 -0.0016 29 1 0.6171 -4.9201 -0.8930 30 1 0.6178 -4.9213 0.8870 31 1 2.8336 -5.9119 -0.7852 32 1 0.5858 -7.1884 -0.5950 33 1 0.5139 -6.8854 1.8786 34 1 2.0553 -7.7655 2.0198 35 1 -0.5735 -8.8603 0.9173 36 1 0.2120 -9.3210 2.4481 37 1 3.1496 -13.4491 2.0200 38 1 2.3329 -10.4656 -0.9879 39 1 0.8073 -9.6094 -1.3226 40 1 3.3072 -8.4423 -0.0114 41 1 2.6776 -8.0533 -1.6306 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199490716.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:16 Heat of formation + Delta-G solvation = -10.707029 kcal Electronic energy + Delta-G solvation = -26162.858040 eV Core-core repulsion = 22204.696490 eV Total energy + Delta-G solvation = -3958.161550 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.96083 -41.22879 -40.15533 -38.85754 -36.41760 -35.78235 -33.61366 -33.26717 -32.30984 -32.07773 -28.91507 -28.19621 -26.33632 -25.20047 -24.36770 -23.43941 -21.64147 -21.08902 -20.64511 -20.09026 -19.86223 -18.42524 -17.72504 -17.52200 -17.06098 -16.85465 -16.49984 -16.20469 -16.08534 -15.96777 -15.51552 -15.30581 -15.20974 -14.89800 -14.43449 -14.24384 -13.84663 -13.74288 -13.55902 -13.37800 -13.25865 -13.07926 -12.89246 -12.66114 -12.39409 -12.29879 -12.11469 -11.75098 -11.68682 -11.50201 -11.37981 -11.22225 -11.13944 -10.60591 -10.31683 -10.00061 -9.89169 -9.28268 -8.46099 -5.94323 -1.36965 -0.31292 0.39653 0.87509 1.36985 1.42671 1.56295 1.58214 1.81329 2.07483 2.29682 2.87784 2.93567 3.21714 3.25451 3.48857 3.57648 3.64380 3.88891 3.99167 4.16787 4.28960 4.32192 4.43060 4.45061 4.54128 4.55025 4.62081 4.64695 4.78645 4.82198 4.99601 5.15020 5.34158 5.37388 5.42413 5.93306 6.05161 6.15916 6.46806 6.56484 6.61684 6.77478 7.14292 7.58520 8.13983 8.71344 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.031892 B = 0.001886 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.750238 B =14839.794573 C =15210.588971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.013 4.013 3 Si 0.991 3.009 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.332 4.332 8 H 0.077 0.923 9 N -0.574 5.574 10 C 0.436 3.564 11 O -0.625 6.625 12 C 0.067 3.933 13 N -0.683 5.683 14 C 0.089 3.911 15 C -0.121 4.121 16 C 0.119 3.881 17 N -0.598 5.598 18 C 0.603 3.397 19 O -0.554 6.554 20 C -0.310 4.310 21 C 0.073 3.927 22 N -0.277 5.277 23 N -0.305 5.305 24 S 0.523 5.477 25 C 0.104 3.896 26 C -0.132 4.132 27 H 0.277 0.723 28 H 0.397 0.603 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.347 0.653 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.052 0.948 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.227 0.773 38 H 0.080 0.920 39 H 0.121 0.879 40 H 0.063 0.937 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.608 -23.985 -4.317 24.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.213 4.213 3 Si 0.815 3.185 4 H -0.199 1.199 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.462 4.462 8 H 0.095 0.905 9 N -0.212 5.212 10 C 0.224 3.776 11 O -0.512 6.512 12 C -0.065 4.065 13 N -0.316 5.316 14 C -0.021 4.021 15 C -0.160 4.160 16 C -0.003 4.003 17 N -0.331 5.331 18 C 0.389 3.611 19 O -0.433 6.433 20 C -0.450 4.450 21 C -0.094 4.094 22 N -0.140 5.140 23 N -0.286 5.286 24 S 0.659 5.341 25 C -0.020 4.020 26 C -0.170 4.170 27 H 0.087 0.913 28 H 0.231 0.769 29 H 0.090 0.910 30 H 0.120 0.880 31 H 0.167 0.833 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.120 0.880 36 H 0.104 0.896 37 H 0.243 0.757 38 H 0.097 0.903 39 H 0.138 0.862 40 H 0.082 0.918 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.676 -24.598 -4.881 25.220 hybrid contribution -0.213 1.252 0.919 1.567 sum -2.889 -23.346 -3.962 23.855 Atomic orbital electron populations 1.69663 1.06726 1.29191 1.50458 1.26006 0.96549 1.02332 0.96410 0.84901 0.78036 0.77293 0.78295 1.19899 1.19559 1.19758 1.19673 0.92640 0.84109 1.49737 0.90465 1.41946 1.09359 1.04731 1.65118 1.20994 0.88274 0.86301 0.82012 1.90497 1.16021 1.88016 1.56649 1.21572 0.93961 0.87789 1.03172 1.60055 1.19150 1.00640 1.51718 1.21662 0.96518 0.87653 0.96241 1.21963 1.00653 0.96329 0.97036 1.21771 0.93835 0.85988 0.98682 1.48053 1.52240 1.15076 1.17683 1.16672 0.78042 0.81227 0.85166 1.90842 1.55009 1.80584 1.16915 1.27963 1.11097 1.05062 1.00917 1.24720 0.93399 0.89016 1.02310 1.70838 1.22437 1.27164 0.93581 1.78527 1.17813 1.15330 1.16889 1.82387 1.34979 1.16387 1.00337 1.22296 1.00509 0.96695 0.82548 1.22059 0.98601 0.93358 1.03007 0.91326 0.76913 0.90992 0.87991 0.83303 0.91115 0.90191 0.92920 0.87972 0.89564 0.75706 0.90304 0.86154 0.91824 0.87987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.50 13.05 21.66 0.28 -48.22 16 2 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 3 Si 0.99 42.26 29.55 68.60 2.03 44.29 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 6 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 7 C -0.33 -18.48 9.68 84.04 0.81 -17.67 16 8 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 9 N -0.57 -28.41 5.29 -306.98 -1.62 -30.04 16 10 C 0.44 19.74 7.82 87.66 0.69 20.43 16 11 O -0.63 -33.58 15.78 -3.06 -0.05 -33.63 16 12 C 0.07 2.04 5.96 85.56 0.51 2.55 16 13 N -0.68 -18.34 5.93 -494.86 -2.94 -21.28 16 14 C 0.09 1.51 2.46 45.05 0.11 1.62 16 15 C -0.12 -2.18 5.62 30.78 0.17 -2.00 16 16 C 0.12 1.70 6.43 86.36 0.56 2.26 16 17 N -0.60 -8.41 2.97 -823.09 -2.45 -10.86 16 18 C 0.60 11.03 7.66 86.59 0.66 11.70 16 19 O -0.55 -14.16 16.46 -4.11 -0.07 -14.23 16 20 C -0.31 -4.61 6.21 24.62 0.15 -4.46 16 21 C 0.07 1.16 11.62 84.78 0.99 2.14 16 22 N -0.28 -5.29 11.54 -57.87 -0.67 -5.96 16 23 N -0.31 -5.33 12.51 37.02 0.46 -4.87 16 24 S 0.52 5.33 19.87 -56.49 -1.12 4.21 16 25 C 0.10 0.89 5.71 86.36 0.49 1.39 16 26 C -0.13 -1.67 5.36 30.67 0.16 -1.51 16 27 H 0.28 13.67 8.31 -92.71 -0.77 12.90 16 28 H 0.40 18.50 7.90 -92.71 -0.73 17.77 16 29 H 0.07 1.81 8.05 -2.39 -0.02 1.79 16 30 H 0.10 2.79 7.42 -2.39 -0.02 2.78 16 31 H 0.35 9.74 8.03 -89.69 -0.72 9.02 16 32 H 0.07 0.94 7.80 -2.38 -0.02 0.92 16 33 H 0.08 1.48 7.43 -2.39 -0.02 1.46 16 34 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.09 1.52 7.00 -2.38 -0.02 1.50 16 37 H 0.23 2.73 8.06 -2.91 -0.02 2.71 16 38 H 0.08 0.56 3.69 -19.94 -0.07 0.49 16 39 H 0.12 0.34 8.14 -2.38 -0.02 0.33 16 40 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.10 0.97 8.10 -2.38 -0.02 0.95 16 Total: -1.00 -75.11 355.82 -0.77 -75.88 By element: Atomic # 1 Polarization: 28.89 SS G_CDS: -0.41 Total: 28.48 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: 5.77 Total: 16.21 kcal Atomic # 7 Polarization: -114.29 SS G_CDS: -6.93 Total: -121.21 kcal Atomic # 8 Polarization: -47.75 SS G_CDS: -0.12 Total: -47.86 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Atomic # 16 Polarization: 5.33 SS G_CDS: -1.12 Total: 4.21 kcal Total: -75.11 -0.77 -75.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199490716.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.174 kcal (2) G-P(sol) polarization free energy of solvation -75.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds