Wall clock time and date at job start Tue Mar 31 2020 22:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86800 * 120.00080 * 2 1 4 4 H 1.48499 * 109.47196 * 270.00154 * 3 2 1 5 5 H 1.48508 * 109.46942 * 29.99717 * 3 2 1 6 6 H 1.48497 * 109.47793 * 149.99756 * 3 2 1 7 7 C 1.38949 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00386 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99911 * 0.02562 * 7 2 1 10 10 C 1.34771 * 119.99929 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00346 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99976 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.47114 * 179.97438 * 12 10 9 14 14 C 1.46903 * 110.99994 * 180.02562 * 13 12 10 15 15 C 1.53038 * 109.46061 * 154.99904 * 14 13 12 16 16 C 1.53195 * 109.31383 * 181.38785 * 15 14 13 17 17 N 1.46935 * 108.77343 * 305.36849 * 16 15 14 18 18 C 1.34778 * 120.62695 * 233.58601 * 17 16 15 19 19 O 1.21605 * 119.99460 * 183.35245 * 18 17 16 20 20 C 1.47445 * 120.00109 * 3.07324 * 18 17 16 21 21 C 1.37983 * 124.15247 * 172.98945 * 20 18 17 22 22 S 1.72098 * 104.03142 * 179.90453 * 21 20 18 23 23 N 1.56400 * 96.15616 * 0.32885 * 22 21 20 24 24 N 1.27417 * 109.87349 * 359.79603 * 23 22 21 25 25 C 1.46922 * 118.73877 * 53.86147 * 17 16 15 26 26 C 1.53038 * 109.46115 * 275.07199 * 14 13 12 27 27 H 0.97004 * 120.00132 * 0.02562 * 1 2 3 28 28 H 0.96996 * 120.00160 * 359.97438 * 9 7 2 29 29 H 1.09005 * 109.46927 * 60.00690 * 12 10 9 30 30 H 1.09003 * 109.47457 * 300.00590 * 12 10 9 31 31 H 1.00898 * 111.00592 * 303.95757 * 13 12 10 32 32 H 1.09004 * 109.45947 * 35.03137 * 14 13 12 33 33 H 1.09000 * 109.49365 * 61.43894 * 15 14 13 34 34 H 1.08995 * 109.50400 * 301.34316 * 15 14 13 35 35 H 1.08997 * 109.58377 * 185.58439 * 16 15 14 36 36 H 1.09000 * 109.70262 * 65.22088 * 16 15 14 37 37 H 1.08000 * 127.98107 * 359.97438 * 21 20 18 38 38 H 1.08994 * 109.58941 * 65.92477 * 25 17 16 39 39 H 1.08998 * 109.58628 * 186.35523 * 25 17 16 40 40 H 1.08997 * 109.49940 * 298.56300 * 26 14 13 41 41 H 1.09000 * 109.49944 * 58.66138 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2438 -4.8629 0.0011 13 7 2.1985 -5.9794 0.0004 14 6 1.4982 -7.2708 0.0003 15 6 2.4045 -8.3422 -0.6102 16 6 1.6584 -9.6799 -0.6404 17 7 1.1875 -9.9894 0.7166 18 6 1.4873 -11.1693 1.2949 19 8 1.0411 -11.4385 2.3937 20 6 2.3513 -12.1361 0.5929 21 6 2.8252 -13.3031 1.1563 22 16 3.7594 -14.0223 -0.0974 23 7 3.5181 -12.8949 -1.1542 24 7 2.7736 -11.9879 -0.6577 25 6 0.3785 -8.9908 1.4285 26 6 1.1437 -7.6586 1.4376 27 1 -0.4850 0.8401 -0.0004 28 1 0.3534 -2.3907 0.0005 29 1 0.6169 -4.9209 -0.8887 30 1 0.6174 -4.9205 0.8913 31 1 2.8328 -5.9124 -0.7814 32 1 0.5851 -7.1887 -0.5892 33 1 3.3067 -8.4424 -0.0069 34 1 2.6757 -8.0539 -1.6258 35 1 2.3317 -10.4661 -0.9818 36 1 0.8059 -9.6099 -1.3160 37 1 2.6494 -13.6789 2.1534 38 1 -0.5764 -8.8634 0.9188 39 1 0.2070 -9.3223 2.4526 40 1 2.0577 -7.7653 2.0217 41 1 0.5173 -6.8838 1.8796 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201864783.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:31 Heat of formation + Delta-G solvation = 23.652972 kcal Electronic energy + Delta-G solvation = -26277.858105 eV Core-core repulsion = 22321.186517 eV Total energy + Delta-G solvation = -3956.671588 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.76182 -39.95627 -38.49140 -37.68031 -35.14882 -33.85434 -32.79590 -31.39259 -31.27376 -31.01160 -27.76202 -26.94354 -25.18291 -24.20221 -23.15243 -22.64208 -21.16497 -20.26222 -19.28420 -18.86766 -17.86421 -16.93545 -16.72260 -16.54081 -16.10169 -15.84638 -15.34216 -15.16996 -14.78152 -14.50612 -14.34124 -14.05702 -13.81072 -13.72973 -13.45416 -13.28481 -12.61699 -12.59713 -12.26545 -12.18176 -11.97643 -11.62024 -11.44951 -11.39852 -11.06770 -10.83025 -10.74692 -10.59472 -10.53899 -10.46908 -10.38539 -10.21090 -9.87808 -9.49887 -8.96096 -8.43255 -8.05107 -7.94640 -6.40636 -3.81383 -0.44959 0.40333 0.93338 0.99409 2.59005 2.72888 3.18642 3.27160 3.28067 3.33441 3.92225 4.08220 4.14157 4.20890 4.30500 4.67595 4.75388 4.81446 4.96612 5.08078 5.17252 5.24383 5.29120 5.37658 5.51678 5.57755 5.75158 5.79015 5.89034 5.92784 5.99255 6.07593 6.23400 6.33684 6.35669 6.88103 7.08068 7.26819 7.56258 7.68437 7.69175 8.07682 8.62623 9.19107 9.55676 10.07280 10.77117 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.031534 B = 0.001854 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.721303 B =15099.253627 C =15600.295468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.441 3.559 11 O -0.583 6.583 12 C 0.051 3.949 13 N -0.665 5.665 14 C 0.086 3.914 15 C -0.132 4.132 16 C 0.064 3.936 17 N -0.586 5.586 18 C 0.601 3.399 19 O -0.530 6.530 20 C -0.016 4.016 21 C -0.238 4.238 22 S 0.475 5.525 23 N -0.293 5.293 24 N -0.209 5.209 25 C 0.111 3.889 26 C -0.122 4.122 27 H 0.271 0.729 28 H 0.392 0.608 29 H 0.043 0.957 30 H 0.085 0.915 31 H 0.350 0.650 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.150 0.850 36 H 0.069 0.931 37 H 0.210 0.790 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.075 0.925 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.253 -29.999 -0.371 30.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.467 6.467 12 C -0.082 4.082 13 N -0.298 5.298 14 C -0.024 4.024 15 C -0.171 4.171 16 C -0.060 4.060 17 N -0.317 5.317 18 C 0.384 3.616 19 O -0.406 6.406 20 C -0.162 4.162 21 C -0.395 4.395 22 S 0.611 5.389 23 N -0.273 5.273 24 N -0.078 5.078 25 C -0.011 4.011 26 C -0.161 4.161 27 H 0.081 0.919 28 H 0.225 0.775 29 H 0.061 0.939 30 H 0.103 0.897 31 H 0.171 0.829 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.166 0.834 36 H 0.087 0.913 37 H 0.227 0.773 38 H 0.091 0.909 39 H 0.114 0.886 40 H 0.094 0.906 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.704 -30.362 -0.745 30.491 hybrid contribution -1.499 1.669 0.253 2.257 sum 1.205 -28.693 -0.492 28.722 Atomic orbital electron populations 1.69611 1.05925 1.28132 1.50675 1.25264 0.95647 0.99728 0.97374 0.85854 0.79251 0.80807 0.78351 1.20442 1.20929 1.19412 1.19702 0.93365 0.82247 1.47522 0.87942 1.41867 1.09192 1.04616 1.64430 1.19827 0.88393 0.84738 0.84415 1.90522 1.13783 1.87077 1.55347 1.21722 0.94382 0.90991 1.01080 1.60084 1.18773 0.99544 1.51362 1.21535 0.95717 0.89411 0.95784 1.22062 0.99305 0.93948 1.01768 1.23099 1.00913 1.00322 0.81699 1.47978 1.51292 1.15144 1.17308 1.16732 0.79654 0.80779 0.84414 1.90834 1.53401 1.76723 1.19640 1.22745 1.04227 0.97917 0.91333 1.28903 1.03068 0.98479 1.09068 1.81575 1.35393 1.25643 0.96319 1.78683 1.17899 1.04371 1.26342 1.71229 1.08713 1.17968 1.09897 1.21896 0.93338 0.87367 0.98546 1.22014 1.01319 0.95350 0.97398 0.91892 0.77472 0.93914 0.89676 0.82948 0.93816 0.90654 0.90450 0.83385 0.91275 0.77337 0.90937 0.88591 0.90594 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.68 13.05 55.50 0.72 -23.96 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.22 29.55 -169.99 -5.02 16.20 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 8 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 9 N -0.56 -14.43 5.29 -10.96 -0.06 -14.49 16 10 C 0.44 10.50 7.82 -10.99 -0.09 10.42 16 11 O -0.58 -16.02 15.78 5.55 0.09 -15.93 16 12 C 0.05 0.90 5.96 -4.97 -0.03 0.87 16 13 N -0.66 -10.74 5.93 -107.94 -0.64 -11.38 16 14 C 0.09 1.06 2.45 -67.67 -0.17 0.89 16 15 C -0.13 -1.44 5.36 -26.61 -0.14 -1.58 16 16 C 0.06 0.63 6.27 -3.70 -0.02 0.61 16 17 N -0.59 -6.38 2.97 -173.75 -0.52 -6.89 16 18 C 0.60 6.97 7.68 -12.51 -0.10 6.87 16 19 O -0.53 -7.30 16.23 5.27 0.09 -7.21 16 20 C -0.02 -0.15 6.70 -83.78 -0.56 -0.71 16 21 C -0.24 -1.49 11.22 30.64 0.34 -1.14 16 22 S 0.47 2.18 23.38 -107.50 -2.51 -0.33 16 23 N -0.29 -2.48 12.49 60.35 0.75 -1.72 16 24 N -0.21 -2.01 7.78 32.73 0.25 -1.76 16 25 C 0.11 1.16 6.45 -3.48 -0.02 1.14 16 26 C -0.12 -1.45 5.60 -26.38 -0.15 -1.59 16 27 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 29 H 0.04 0.68 8.05 -51.93 -0.42 0.27 16 30 H 0.09 1.39 7.41 -51.93 -0.38 1.01 16 31 H 0.35 5.85 8.03 -39.29 -0.32 5.53 16 32 H 0.04 0.52 7.80 -51.93 -0.40 0.11 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 35 H 0.15 1.50 3.56 -147.78 -0.53 0.97 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.21 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.10 1.05 7.02 -51.93 -0.36 0.69 16 40 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.08 0.94 7.42 -51.93 -0.39 0.55 16 LS Contribution 355.87 15.07 5.36 5.36 Total: -1.00 -34.11 355.87 -7.82 -41.93 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -5.17 Total: 12.50 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: -1.17 Total: 7.70 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: 0.52 Total: -60.21 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: 0.17 Total: -23.14 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 2.18 SS G_CDS: -2.51 Total: -0.33 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.11 -7.82 -41.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201864783.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.584 kcal (2) G-P(sol) polarization free energy of solvation -34.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds