Wall clock time and date at job start Tue Mar 31 2020 23:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 110.64293 * 2 1 4 4 C 1.54939 * 110.71832 * 236.65129 * 2 1 3 5 5 N 1.48536 * 103.22504 * 204.22491 * 4 2 1 6 6 C 1.46903 * 111.00002 * 159.72365 * 5 4 2 7 7 C 1.50702 * 109.46973 * 190.00635 * 6 5 4 8 8 O 1.21289 * 120.00092 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99496 * 180.02562 * 7 6 5 10 10 C 1.37105 * 119.99422 * 179.97438 * 9 7 6 11 11 H 1.07998 * 119.99761 * 0.02562 * 10 9 7 12 12 C 1.38953 * 119.99359 * 179.97438 * 10 9 7 13 13 N 1.31406 * 120.00074 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99672 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47004 * 89.99563 * 14 12 10 16 16 H 1.48492 * 109.47211 * 210.00459 * 14 12 10 17 17 H 1.48506 * 109.46994 * 330.00282 * 14 12 10 18 18 C 1.47907 * 105.81677 * 39.21151 * 5 4 2 19 19 C 1.53995 * 107.05762 * 334.66778 * 18 5 4 20 20 H 1.08999 * 110.38963 * 120.18792 * 19 18 5 21 21 N 1.46497 * 110.30640 * 242.30837 * 19 18 5 22 22 C 1.34782 * 120.00148 * 270.71508 * 21 19 18 23 23 O 1.21622 * 119.99653 * 0.02562 * 22 21 19 24 24 C 1.47171 * 120.00184 * 180.02562 * 22 21 19 25 25 C 1.38241 * 128.47609 * 179.97438 * 24 22 21 26 26 N 1.31242 * 111.88701 * 179.73439 * 25 24 22 27 27 N 1.27337 * 120.04085 * 0.24773 * 26 25 24 28 28 S 1.56636 * 109.73928 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.46946 * 296.84927 * 1 2 3 30 30 H 1.08997 * 109.47031 * 56.84928 * 1 2 3 31 31 H 1.08998 * 109.47154 * 176.85246 * 1 2 3 32 32 H 1.08993 * 110.67118 * 322.66287 * 4 2 1 33 33 H 1.09005 * 110.66460 * 85.63038 * 4 2 1 34 34 H 1.09000 * 109.46556 * 310.00211 * 6 5 4 35 35 H 1.09000 * 109.47048 * 70.00287 * 6 5 4 36 36 H 0.96998 * 120.00403 * 359.97438 * 9 7 6 37 37 H 0.97002 * 119.99684 * 180.02562 * 13 12 10 38 38 H 1.09001 * 109.91666 * 215.31542 * 18 5 4 39 39 H 1.09002 * 109.91438 * 94.01994 * 18 5 4 40 40 H 0.97005 * 119.99940 * 90.71933 * 21 19 18 41 41 H 1.08002 * 124.05835 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0782 -0.7967 -1.2106 5 7 3.4318 -1.2106 -0.7602 6 6 3.9211 -2.3525 -1.5442 7 6 5.1737 -2.8984 -0.9084 8 8 5.6155 -2.3862 0.0984 9 7 5.8034 -3.9550 -1.4592 10 6 6.9433 -4.4513 -0.8811 11 1 7.3362 -3.9958 0.0158 12 6 7.5922 -5.5411 -1.4487 13 7 7.1137 -6.0955 -2.5397 14 14 9.1448 -6.2177 -0.6607 15 1 8.7822 -7.2643 0.3285 16 1 10.0154 -6.8077 -1.7091 17 1 9.8712 -5.1189 0.0252 18 6 3.2893 -1.5698 0.6675 19 6 2.0770 -0.7907 1.2105 20 1 1.3202 -1.4794 1.5859 21 7 2.4971 0.1288 2.2707 22 6 2.5240 -0.2874 3.5524 23 8 2.1999 -1.4266 3.8286 24 6 2.9455 0.6366 4.6175 25 6 3.0374 0.3985 5.9762 26 7 3.4564 1.4558 6.6309 27 7 3.7180 2.5323 6.0030 28 16 3.4585 2.3279 4.4718 29 1 -0.3633 0.4642 0.9169 30 1 -0.3633 0.5620 -0.8604 31 1 -0.3633 -1.0261 -0.0564 32 1 1.4559 -1.6688 -1.4108 33 1 2.1416 -0.1601 -2.0931 34 1 3.1576 -3.1300 -1.5688 35 1 4.1416 -2.0274 -2.5609 36 1 5.4503 -4.3644 -2.2646 37 1 7.5666 -6.8565 -2.9357 38 1 4.1886 -1.2851 1.2135 39 1 3.1160 -2.6415 0.7651 40 1 2.7559 1.0374 2.0503 41 1 2.7978 -0.5459 6.4423 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206253977.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:57 Heat of formation + Delta-G solvation = 16.252283 kcal Electronic energy + Delta-G solvation = -26696.390660 eV Core-core repulsion = 22739.398154 eV Total energy + Delta-G solvation = -3956.992506 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.14432 -40.27244 -38.94430 -37.65995 -34.68684 -33.93270 -32.82239 -32.28777 -31.28109 -29.24648 -27.89306 -27.16068 -25.37080 -24.21329 -23.04687 -21.47490 -20.77964 -20.49766 -19.46983 -19.11738 -17.85759 -17.70256 -16.82950 -16.19402 -15.95131 -15.68749 -15.32396 -14.89148 -14.74324 -14.59418 -14.38940 -14.05894 -13.78631 -13.34977 -13.14873 -13.02456 -12.69234 -12.42873 -12.22618 -12.09462 -11.89943 -11.58003 -11.46364 -11.38325 -11.10243 -10.88655 -10.86723 -10.64826 -10.41034 -10.40209 -10.34631 -10.24040 -10.16815 -9.53326 -9.28617 -8.45568 -8.05175 -7.96728 -6.44218 -3.85021 -0.59227 0.47000 1.14521 1.66772 2.65415 2.76507 3.16539 3.25512 3.31251 3.70120 3.86293 4.00860 4.18367 4.29095 4.36974 4.47951 4.58877 4.82664 4.98710 5.20911 5.22214 5.26723 5.30200 5.35827 5.47955 5.59343 5.69898 5.72784 5.78885 5.87458 5.93639 6.04630 6.23194 6.24341 6.59079 7.02069 7.15295 7.18342 7.31547 7.53090 7.79328 8.03092 8.58266 9.15306 9.50843 10.02032 10.73441 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011198 B = 0.002898 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.805376 B = 9659.686527 C =11506.925238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.100 4.100 3 H 0.090 0.910 4 C 0.037 3.963 5 N -0.495 5.495 6 C 0.035 3.965 7 C 0.440 3.560 8 O -0.581 6.581 9 N -0.561 5.561 10 C -0.299 4.299 11 H 0.103 0.897 12 C 0.023 3.977 13 N -0.901 5.901 14 Si 0.929 3.071 15 H -0.278 1.278 16 H -0.283 1.283 17 H -0.269 1.269 18 C 0.041 3.959 19 C 0.133 3.867 20 H 0.099 0.901 21 N -0.705 5.705 22 C 0.601 3.399 23 O -0.511 6.511 24 C -0.281 4.281 25 C 0.074 3.926 26 N -0.251 5.251 27 N -0.257 5.257 28 S 0.422 5.578 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.048 0.952 33 H 0.086 0.914 34 H 0.050 0.950 35 H 0.092 0.908 36 H 0.392 0.608 37 H 0.272 0.728 38 H 0.107 0.893 39 H 0.050 0.950 40 H 0.400 0.600 41 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.701 15.344 5.428 21.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.120 4.120 3 H 0.108 0.892 4 C -0.092 4.092 5 N -0.219 5.219 6 C -0.096 4.096 7 C 0.226 3.774 8 O -0.466 6.466 9 N -0.198 5.198 10 C -0.429 4.429 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.542 5.542 14 Si 0.756 3.244 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 C -0.088 4.088 19 C 0.028 3.972 20 H 0.117 0.883 21 N -0.357 5.357 22 C 0.384 3.616 23 O -0.387 6.387 24 C -0.422 4.422 25 C -0.093 4.093 26 N -0.116 5.116 27 N -0.238 5.238 28 S 0.557 5.443 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.104 0.896 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.225 0.775 37 H 0.082 0.918 38 H 0.126 0.874 39 H 0.068 0.932 40 H 0.235 0.765 41 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -13.541 16.925 6.443 22.613 hybrid contribution -0.191 -2.467 -0.228 2.485 sum -13.733 14.458 6.215 20.886 Atomic orbital electron populations 1.21793 0.93911 1.02367 1.02031 1.22349 0.95797 1.00027 0.93783 0.89213 1.23361 0.89712 0.98632 0.97477 1.64633 1.21248 1.33537 1.02487 1.22122 0.96790 0.92166 0.98546 1.19717 0.86993 0.83505 0.87234 1.90495 1.68160 1.61204 1.26737 1.41849 1.24320 1.27300 1.26294 1.19695 1.01249 1.11779 1.10137 0.87926 1.25260 0.99691 0.96769 0.96142 1.69609 1.40921 1.23743 1.19971 0.85864 0.80875 0.79118 0.78494 1.20381 1.20888 1.19394 1.23324 0.98009 0.98003 0.89466 1.22224 0.97244 0.91419 0.86269 0.88277 1.45894 1.67985 1.16128 1.05673 1.16465 0.78003 0.85773 0.81347 1.90882 1.47570 1.17882 1.82334 1.28096 1.13881 1.00959 0.99291 1.24499 0.96449 0.99399 0.88939 1.70703 1.14006 0.95528 1.31317 1.78885 1.20318 1.20723 1.03924 1.82585 1.44230 1.03339 1.14167 0.92402 0.91975 0.92258 0.93372 0.89594 0.93172 0.88983 0.77454 0.91836 0.87447 0.93193 0.76526 0.76679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.16 37.16 0.34 -0.68 16 2 C -0.10 -0.90 3.37 -88.76 -0.30 -1.20 16 3 H 0.09 0.71 7.75 -51.93 -0.40 0.31 16 4 C 0.04 0.40 6.00 -1.90 -0.01 0.39 16 5 N -0.49 -7.62 5.26 -231.88 -1.22 -8.84 16 6 C 0.04 0.61 5.48 -4.97 -0.03 0.58 16 7 C 0.44 10.16 7.35 -10.98 -0.08 10.08 16 8 O -0.58 -15.22 13.37 5.55 0.07 -15.14 16 9 N -0.56 -14.07 5.29 -10.96 -0.06 -14.12 16 10 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 11 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 12 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 13 N -0.90 -24.40 13.05 55.50 0.72 -23.68 16 14 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 15 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 18 C 0.04 0.66 4.86 -2.75 -0.01 0.65 16 19 C 0.13 1.57 2.92 -66.58 -0.19 1.38 16 20 H 0.10 1.24 7.26 -51.93 -0.38 0.86 16 21 N -0.71 -7.42 5.00 -53.65 -0.27 -7.69 16 22 C 0.60 7.36 7.80 -12.63 -0.10 7.26 16 23 O -0.51 -8.08 16.63 5.26 0.09 -7.99 16 24 C -0.28 -2.87 6.81 -35.96 -0.25 -3.12 16 25 C 0.07 0.76 11.55 -17.80 -0.21 0.55 16 26 N -0.25 -2.90 11.54 30.36 0.35 -2.55 16 27 N -0.26 -2.82 12.51 60.35 0.75 -2.07 16 28 S 0.42 3.41 23.05 -107.50 -2.48 0.93 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 32 H 0.05 0.50 7.73 -51.93 -0.40 0.10 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.05 0.79 7.89 -51.93 -0.41 0.38 16 35 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 36 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 37 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.11 2.11 6.53 -51.93 -0.34 1.77 16 39 H 0.05 0.92 7.59 -51.93 -0.39 0.52 16 40 H 0.40 3.15 7.81 -40.82 -0.32 2.83 16 41 H 0.22 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 361.72 15.07 5.45 5.45 Total: -1.00 -33.63 361.72 -7.69 -41.32 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -5.01 Total: 10.35 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: -1.08 Total: 7.97 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: 0.28 Total: -58.94 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: 0.16 Total: -23.13 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 3.41 SS G_CDS: -2.48 Total: 0.93 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.63 -7.69 -41.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206253977.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.571 kcal (2) G-P(sol) polarization free energy of solvation -33.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds