Wall clock time and date at job start Tue Mar 31 2020 23:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 110.64293 * 2 1 4 4 C 1.54939 * 110.71832 * 236.65129 * 2 1 3 5 5 N 1.48536 * 103.22504 * 204.22491 * 4 2 1 6 6 C 1.46903 * 111.00002 * 159.72365 * 5 4 2 7 7 C 1.50702 * 109.46973 * 190.00635 * 6 5 4 8 8 O 1.21289 * 120.00092 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99496 * 180.02562 * 7 6 5 10 10 C 1.37105 * 119.99422 * 179.97438 * 9 7 6 11 11 H 1.07998 * 119.99761 * 0.02562 * 10 9 7 12 12 C 1.38953 * 119.99359 * 179.97438 * 10 9 7 13 13 N 1.31406 * 120.00074 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99672 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47004 * 89.99563 * 14 12 10 16 16 H 1.48492 * 109.47211 * 210.00459 * 14 12 10 17 17 H 1.48506 * 109.46994 * 330.00282 * 14 12 10 18 18 C 1.47907 * 105.81677 * 39.21151 * 5 4 2 19 19 C 1.53995 * 107.05762 * 334.66778 * 18 5 4 20 20 H 1.08999 * 110.38963 * 120.18792 * 19 18 5 21 21 N 1.46497 * 110.30640 * 242.30837 * 19 18 5 22 22 C 1.34782 * 120.00148 * 270.71508 * 21 19 18 23 23 O 1.21622 * 119.99653 * 0.02562 * 22 21 19 24 24 C 1.47171 * 120.00184 * 180.02562 * 22 21 19 25 25 C 1.38241 * 128.47609 * 179.97438 * 24 22 21 26 26 N 1.31242 * 111.88701 * 179.73439 * 25 24 22 27 27 N 1.27337 * 120.04085 * 0.24773 * 26 25 24 28 28 S 1.56636 * 109.73928 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.46946 * 296.84927 * 1 2 3 30 30 H 1.08997 * 109.47031 * 56.84928 * 1 2 3 31 31 H 1.08998 * 109.47154 * 176.85246 * 1 2 3 32 32 H 1.08993 * 110.67118 * 322.66287 * 4 2 1 33 33 H 1.09005 * 110.66460 * 85.63038 * 4 2 1 34 34 H 1.09000 * 109.46556 * 310.00211 * 6 5 4 35 35 H 1.09000 * 109.47048 * 70.00287 * 6 5 4 36 36 H 0.96998 * 120.00403 * 359.97438 * 9 7 6 37 37 H 0.97002 * 119.99684 * 180.02562 * 13 12 10 38 38 H 1.09001 * 109.91666 * 215.31542 * 18 5 4 39 39 H 1.09002 * 109.91438 * 94.01994 * 18 5 4 40 40 H 0.97005 * 119.99940 * 90.71933 * 21 19 18 41 41 H 1.08002 * 124.05835 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0782 -0.7967 -1.2106 5 7 3.4318 -1.2106 -0.7602 6 6 3.9211 -2.3525 -1.5442 7 6 5.1737 -2.8984 -0.9084 8 8 5.6155 -2.3862 0.0984 9 7 5.8034 -3.9550 -1.4592 10 6 6.9433 -4.4513 -0.8811 11 1 7.3362 -3.9958 0.0158 12 6 7.5922 -5.5411 -1.4487 13 7 7.1137 -6.0955 -2.5397 14 14 9.1448 -6.2177 -0.6607 15 1 8.7822 -7.2643 0.3285 16 1 10.0154 -6.8077 -1.7091 17 1 9.8712 -5.1189 0.0252 18 6 3.2893 -1.5698 0.6675 19 6 2.0770 -0.7907 1.2105 20 1 1.3202 -1.4794 1.5859 21 7 2.4971 0.1288 2.2707 22 6 2.5240 -0.2874 3.5524 23 8 2.1999 -1.4266 3.8286 24 6 2.9455 0.6366 4.6175 25 6 3.0374 0.3985 5.9762 26 7 3.4564 1.4558 6.6309 27 7 3.7180 2.5323 6.0030 28 16 3.4585 2.3279 4.4718 29 1 -0.3633 0.4642 0.9169 30 1 -0.3633 0.5620 -0.8604 31 1 -0.3633 -1.0261 -0.0564 32 1 1.4559 -1.6688 -1.4108 33 1 2.1416 -0.1601 -2.0931 34 1 3.1576 -3.1300 -1.5688 35 1 4.1416 -2.0274 -2.5609 36 1 5.4503 -4.3644 -2.2646 37 1 7.5666 -6.8565 -2.9357 38 1 4.1886 -1.2851 1.2135 39 1 3.1160 -2.6415 0.7651 40 1 2.7559 1.0374 2.0503 41 1 2.7978 -0.5459 6.4423 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206253977.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:56 Heat of formation + Delta-G solvation = -11.747176 kcal Electronic energy + Delta-G solvation = -26697.604808 eV Core-core repulsion = 22739.398154 eV Total energy + Delta-G solvation = -3958.206654 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.98212 -41.32577 -40.34192 -39.11794 -36.13313 -35.56471 -33.82555 -33.28652 -33.10634 -30.34335 -29.03978 -28.18143 -26.81436 -25.54309 -24.05765 -22.49026 -21.90800 -21.36523 -20.86561 -20.25082 -19.83302 -18.62557 -17.80464 -17.64715 -17.02951 -16.75393 -16.59575 -16.46584 -15.97008 -15.81291 -15.51490 -15.45312 -15.23607 -14.61661 -14.15971 -14.04090 -13.87541 -13.54665 -13.38984 -13.23253 -13.08750 -12.99834 -12.92955 -12.65071 -12.44117 -12.31617 -12.14353 -11.83214 -11.68342 -11.52816 -11.49877 -11.25900 -11.22121 -10.95305 -10.36924 -10.17650 -10.01759 -9.35056 -8.48846 -5.97204 -1.40443 -0.29095 0.37794 0.82872 1.35458 1.39420 1.51816 1.71744 1.84975 2.03280 2.26746 2.84569 2.90996 3.18026 3.24169 3.52125 3.56483 3.64919 3.67367 4.00133 4.20547 4.34047 4.35411 4.47294 4.52938 4.54134 4.60703 4.71238 4.84519 4.85558 4.98351 5.12229 5.21010 5.35940 5.39089 5.45334 5.80823 5.92376 6.07792 6.21978 6.51931 6.58471 6.88204 7.11008 7.53978 8.09852 8.68659 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011198 B = 0.002898 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.805376 B = 9659.686527 C =11506.925238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.086 4.086 3 H 0.109 0.891 4 C 0.035 3.965 5 N -0.506 5.506 6 C 0.047 3.953 7 C 0.436 3.564 8 O -0.617 6.617 9 N -0.573 5.573 10 C -0.332 4.332 11 H 0.077 0.923 12 C -0.012 4.012 13 N -0.920 5.920 14 Si 0.990 3.010 15 H -0.273 1.273 16 H -0.269 1.269 17 H -0.274 1.274 18 C 0.047 3.953 19 C 0.141 3.859 20 H 0.092 0.908 21 N -0.694 5.694 22 C 0.603 3.397 23 O -0.555 6.555 24 C -0.305 4.305 25 C 0.076 3.924 26 N -0.276 5.276 27 N -0.287 5.287 28 S 0.515 5.485 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.110 0.890 34 H 0.068 0.932 35 H 0.117 0.883 36 H 0.396 0.604 37 H 0.278 0.722 38 H 0.066 0.934 39 H 0.016 0.984 40 H 0.414 0.586 41 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.850 17.019 4.157 23.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.106 4.106 3 H 0.127 0.873 4 C -0.092 4.092 5 N -0.231 5.231 6 C -0.085 4.085 7 C 0.224 3.776 8 O -0.503 6.503 9 N -0.211 5.211 10 C -0.462 4.462 11 H 0.095 0.905 12 C -0.211 4.211 13 N -0.560 5.560 14 Si 0.814 3.186 15 H -0.198 1.198 16 H -0.193 1.193 17 H -0.198 1.198 18 C -0.083 4.083 19 C 0.035 3.965 20 H 0.110 0.890 21 N -0.346 5.346 22 C 0.387 3.613 23 O -0.433 6.433 24 C -0.446 4.446 25 C -0.092 4.092 26 N -0.138 5.138 27 N -0.269 5.269 28 S 0.650 5.350 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.128 0.872 34 H 0.086 0.914 35 H 0.135 0.865 36 H 0.230 0.770 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.034 0.966 40 H 0.252 0.748 41 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -14.708 18.646 5.145 24.300 hybrid contribution 0.163 -2.894 0.116 2.901 sum -14.545 15.752 5.261 22.077 Atomic orbital electron populations 1.21769 0.91856 1.02610 1.03337 1.22366 0.97251 1.00073 0.90862 0.87260 1.23556 0.87151 0.99535 0.98975 1.64608 1.24498 1.32293 1.01684 1.22025 0.94029 0.93320 0.99096 1.20834 0.88049 0.82264 0.86473 1.90483 1.69534 1.61957 1.28306 1.41922 1.24243 1.28216 1.26674 1.19622 1.03098 1.13144 1.10320 0.90538 1.26001 1.02215 0.96417 0.96506 1.69663 1.41916 1.23976 1.20494 0.84970 0.77422 0.78244 0.77976 1.19811 1.19315 1.19843 1.23078 0.98198 0.96644 0.90349 1.22083 0.95013 0.91854 0.87524 0.88971 1.45779 1.67274 1.16578 1.04970 1.16692 0.77182 0.85437 0.82020 1.90856 1.49598 1.19810 1.83056 1.27944 1.15296 1.02539 0.98837 1.24730 0.95743 0.99648 0.89115 1.70770 1.15223 0.95815 1.32033 1.78631 1.21140 1.21131 1.05988 1.82179 1.41025 1.00363 1.11448 0.91752 0.89909 0.92717 0.92504 0.87183 0.91415 0.86513 0.76987 0.91264 0.91514 0.96588 0.74803 0.75690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.16 71.98 0.66 -0.80 16 2 C -0.09 -1.29 3.37 -9.59 -0.03 -1.33 16 3 H 0.11 1.27 7.75 -2.39 -0.02 1.25 16 4 C 0.04 0.65 6.00 86.65 0.52 1.17 16 5 N -0.51 -15.05 5.26 -887.53 -4.67 -19.72 16 6 C 0.05 1.56 5.48 85.56 0.47 2.03 16 7 C 0.44 20.69 7.35 87.66 0.64 21.34 16 8 O -0.62 -33.74 13.37 -3.06 -0.04 -33.78 16 9 N -0.57 -29.53 5.29 -306.98 -1.62 -31.15 16 10 C -0.33 -19.04 9.68 84.04 0.81 -18.23 16 11 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 12 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 13 N -0.92 -49.81 13.05 21.66 0.28 -49.53 16 14 Si 0.99 43.46 29.55 68.60 2.03 45.49 16 15 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 16 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 17 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 18 C 0.05 1.56 4.86 86.45 0.42 1.98 16 19 C 0.14 3.22 2.92 45.87 0.13 3.36 16 20 H 0.09 2.29 7.26 -2.39 -0.02 2.27 16 21 N -0.69 -14.03 5.00 -441.89 -2.21 -16.24 16 22 C 0.60 14.83 7.80 86.59 0.68 15.50 16 23 O -0.55 -18.22 16.63 -4.10 -0.07 -18.29 16 24 C -0.31 -6.09 6.81 24.62 0.17 -5.92 16 25 C 0.08 1.55 11.55 84.78 0.98 2.53 16 26 N -0.28 -6.28 11.54 -57.87 -0.67 -6.94 16 27 N -0.29 -6.01 12.51 37.02 0.46 -5.54 16 28 S 0.52 7.38 23.05 -56.49 -1.30 6.08 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 0.66 8.10 -2.39 -0.02 0.64 16 32 H 0.06 1.00 7.73 -2.39 -0.02 0.98 16 33 H 0.11 1.60 8.14 -2.38 -0.02 1.58 16 34 H 0.07 2.05 7.89 -2.39 -0.02 2.03 16 35 H 0.12 3.37 8.14 -2.39 -0.02 3.35 16 36 H 0.40 19.33 7.90 -92.71 -0.73 18.60 16 37 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 38 H 0.07 2.76 6.53 -2.39 -0.02 2.75 16 39 H 0.02 0.62 7.59 -2.39 -0.02 0.60 16 40 H 0.41 5.68 7.81 -92.70 -0.72 4.96 16 41 H 0.23 3.87 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -76.63 361.72 -2.25 -78.87 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: -0.35 Total: 29.28 kcal Atomic # 6 Polarization: 15.55 SS G_CDS: 5.92 Total: 21.47 kcal Atomic # 7 Polarization: -120.70 SS G_CDS: -8.43 Total: -129.13 kcal Atomic # 8 Polarization: -51.96 SS G_CDS: -0.11 Total: -52.07 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: 7.38 SS G_CDS: -1.30 Total: 6.08 kcal Total: -76.63 -2.25 -78.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206253977.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.127 kcal (2) G-P(sol) polarization free energy of solvation -76.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds