Wall clock time and date at job start Tue Mar 31 2020 23:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 110.64382 * 2 1 4 4 C 1.54942 * 110.87420 * 236.74862 * 2 1 3 5 5 N 1.48529 * 103.22854 * 204.15500 * 4 2 1 6 6 C 1.46892 * 111.00272 * 159.71912 * 5 4 2 7 7 C 1.50701 * 109.47338 * 170.00168 * 6 5 4 8 8 O 1.21299 * 120.00071 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00272 * 180.02562 * 7 6 5 10 10 C 1.37100 * 120.00227 * 180.02562 * 9 7 6 11 11 H 1.08001 * 119.99865 * 359.97438 * 10 9 7 12 12 C 1.38952 * 119.99923 * 179.97438 * 10 9 7 13 13 N 1.31413 * 119.99916 * 179.97438 * 12 10 9 14 14 Si 1.86792 * 120.00159 * 359.97438 * 12 10 9 15 15 H 1.48495 * 109.47382 * 89.99985 * 14 12 10 16 16 H 1.48506 * 109.47392 * 210.00135 * 14 12 10 17 17 H 1.48504 * 109.47109 * 330.00224 * 14 12 10 18 18 C 1.47903 * 105.82013 * 39.20318 * 5 4 2 19 19 C 1.53999 * 107.06057 * 334.67354 * 18 5 4 20 20 H 1.08992 * 110.39441 * 120.18047 * 19 18 5 21 21 N 1.46497 * 110.30873 * 242.31111 * 19 18 5 22 22 C 1.34784 * 119.99479 * 270.71425 * 21 19 18 23 23 O 1.21558 * 120.00046 * 359.97438 * 22 21 19 24 24 C 1.47753 * 119.99530 * 180.02562 * 22 21 19 25 25 C 1.39355 * 124.11290 * 179.97438 * 24 22 21 26 26 N 1.30087 * 112.14418 * 180.02562 * 25 24 22 27 27 S 1.55919 * 108.75544 * 0.02562 * 26 25 24 28 28 N 1.31490 * 124.12147 * 0.03348 * 24 22 21 29 29 H 1.09010 * 109.46780 * 296.84320 * 1 2 3 30 30 H 1.08998 * 109.47693 * 56.83888 * 1 2 3 31 31 H 1.09001 * 109.47217 * 176.84640 * 1 2 3 32 32 H 1.09003 * 110.66412 * 322.58874 * 4 2 1 33 33 H 1.08997 * 110.66499 * 85.71842 * 4 2 1 34 34 H 1.08997 * 109.47586 * 289.99918 * 6 5 4 35 35 H 1.09003 * 109.47265 * 49.99887 * 6 5 4 36 36 H 0.97002 * 120.00238 * 359.97438 * 9 7 6 37 37 H 0.96996 * 120.00595 * 179.97438 * 13 12 10 38 38 H 1.09005 * 109.91958 * 215.31729 * 18 5 4 39 39 H 1.09000 * 109.91551 * 94.02207 * 18 5 4 40 40 H 0.96997 * 120.00481 * 90.70897 * 21 19 18 41 41 H 1.07997 * 123.92534 * 359.76346 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0820 -0.7938 -1.2107 5 7 3.4358 -1.2050 -0.7587 6 6 3.9292 -2.3447 -1.5432 7 6 5.3850 -2.5770 -1.2309 8 8 5.9557 -1.8629 -0.4335 9 7 6.0533 -3.5775 -1.8382 10 6 7.3777 -3.7891 -1.5537 11 1 7.8855 -3.1538 -0.8431 12 6 8.0665 -4.8209 -2.1795 13 7 9.3360 -5.0235 -1.9071 14 14 7.1879 -5.9201 -3.4079 15 1 7.3161 -5.3419 -4.7697 16 1 7.7978 -7.2739 -3.3856 17 1 5.7512 -6.0184 -3.0452 18 6 3.2921 -1.5662 0.6683 19 6 2.0771 -0.7908 1.2105 20 1 1.3213 -1.4818 1.5838 21 7 2.4932 0.1286 2.2723 22 6 2.5192 -0.2892 3.5535 23 8 2.1968 -1.4287 3.8279 24 6 2.9384 0.6383 4.6246 25 6 2.9964 0.2980 5.9747 26 7 3.3952 1.2913 6.7140 27 16 3.6662 2.5222 5.7962 28 7 3.3011 1.8855 4.4201 29 1 -0.3633 0.4641 0.9170 30 1 -0.3634 0.5621 -0.8603 31 1 -0.3634 -1.0261 -0.0565 32 1 1.4622 -1.6673 -1.4129 33 1 2.1479 -0.1553 -2.0916 34 1 3.3563 -3.2363 -1.2886 35 1 3.8152 -2.1309 -2.6060 36 1 5.5971 -4.1483 -2.4762 37 1 9.8168 -5.7440 -2.3436 38 1 4.1899 -1.2800 1.2161 39 1 3.1213 -2.6385 0.7644 40 1 2.7502 1.0380 2.0535 41 1 2.7361 -0.6757 6.3626 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206286566.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:00 Heat of formation + Delta-G solvation = 7.595333 kcal Electronic energy + Delta-G solvation = -26674.746918 eV Core-core repulsion = 22717.379018 eV Total energy + Delta-G solvation = -3957.367900 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.41186 -40.00367 -38.74090 -37.75376 -34.76443 -34.02443 -33.70879 -32.65929 -31.62785 -29.28326 -27.91924 -27.20790 -25.41626 -24.12932 -23.04737 -21.41689 -20.72632 -20.27701 -19.67132 -19.26980 -18.20632 -17.88571 -16.82040 -16.33187 -15.95179 -15.71825 -15.44960 -15.14861 -14.82364 -14.50168 -14.30004 -14.03170 -13.44724 -13.33455 -13.12711 -12.74854 -12.63779 -12.43688 -12.33136 -12.09782 -11.89459 -11.77917 -11.56638 -11.44560 -11.36396 -11.33022 -11.11664 -10.99867 -10.88324 -10.57820 -10.29843 -9.95287 -9.55963 -9.53269 -9.20515 -8.61591 -8.15417 -8.06042 -6.28405 -3.79626 0.10490 1.05903 1.25271 1.30221 2.81416 2.91628 3.04078 3.08191 3.16357 3.77088 3.93809 4.12408 4.15168 4.27649 4.54638 4.55289 4.76373 4.79610 4.87137 5.16993 5.17217 5.22900 5.27107 5.28683 5.46052 5.53840 5.61569 5.67157 5.70490 5.79287 5.88012 5.93519 6.01512 6.05519 6.19716 6.46314 7.01331 7.07106 7.27016 7.61179 7.88696 8.17262 8.63403 8.98388 9.45456 9.87158 10.84944 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012954 B = 0.002660 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.961471 B =10522.030230 C =11996.282720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.100 4.100 3 H 0.091 0.909 4 C 0.038 3.962 5 N -0.490 5.490 6 C 0.033 3.967 7 C 0.454 3.546 8 O -0.558 6.558 9 N -0.593 5.593 10 C -0.303 4.303 11 H 0.119 0.881 12 C 0.040 3.960 13 N -0.883 5.883 14 Si 0.880 3.120 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.270 1.270 18 C 0.033 3.967 19 C 0.137 3.863 20 H 0.100 0.900 21 N -0.694 5.694 22 C 0.606 3.394 23 O -0.522 6.522 24 C 0.013 3.987 25 C 0.091 3.909 26 N -0.578 5.578 27 S 0.720 5.280 28 N -0.545 5.545 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.048 0.952 33 H 0.087 0.913 34 H 0.053 0.947 35 H 0.091 0.909 36 H 0.370 0.630 37 H 0.273 0.727 38 H 0.098 0.902 39 H 0.050 0.950 40 H 0.411 0.589 41 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.245 13.473 8.575 25.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 H 0.109 0.891 4 C -0.091 4.091 5 N -0.214 5.214 6 C -0.099 4.099 7 C 0.239 3.761 8 O -0.439 6.439 9 N -0.233 5.233 10 C -0.432 4.432 11 H 0.136 0.864 12 C -0.162 4.162 13 N -0.523 5.523 14 Si 0.706 3.294 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.195 1.195 18 C -0.096 4.096 19 C 0.032 3.968 20 H 0.118 0.882 21 N -0.345 5.345 22 C 0.386 3.614 23 O -0.397 6.397 24 C -0.162 4.162 25 C -0.103 4.103 26 N -0.419 5.419 27 S 0.762 5.238 28 N -0.395 5.395 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.105 0.895 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.202 0.798 37 H 0.083 0.917 38 H 0.116 0.884 39 H 0.069 0.931 40 H 0.247 0.753 41 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -18.829 15.354 9.710 26.164 hybrid contribution -1.345 -3.021 -1.471 3.620 sum -20.174 12.332 8.239 25.039 Atomic orbital electron populations 1.21777 0.93859 1.02255 1.02099 1.22340 0.95778 1.00245 0.93569 0.89073 1.23336 0.89483 0.98556 0.97676 1.64480 1.21236 1.33719 1.01975 1.22125 0.95955 0.92611 0.99177 1.19628 0.87699 0.83446 0.85320 1.90557 1.69158 1.47627 1.36544 1.42204 1.11462 1.29439 1.40223 1.19418 0.83663 1.15255 1.24820 0.86351 1.25030 0.95603 0.97507 0.98075 1.69620 1.08123 1.31759 1.42828 0.86670 0.79522 0.81174 0.82002 1.19635 1.20226 1.19539 1.23338 0.98553 0.97995 0.89687 1.22098 0.96620 0.91521 0.86524 0.88214 1.45835 1.66808 1.16567 1.05310 1.16740 0.77791 0.85348 0.81566 1.90846 1.48450 1.17871 1.82517 1.22522 1.06728 0.90684 0.96240 1.23796 0.97892 1.00276 0.88296 1.72267 1.22248 1.07870 1.39533 1.79081 1.44304 1.18497 0.81961 1.72435 1.19153 1.13329 1.34613 0.92355 0.91987 0.92309 0.93391 0.89497 0.92938 0.89054 0.79778 0.91660 0.88417 0.93131 0.75260 0.76850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.17 37.15 0.34 -0.70 16 2 C -0.10 -0.95 3.36 -88.76 -0.30 -1.25 16 3 H 0.09 0.84 7.76 -51.93 -0.40 0.44 16 4 C 0.04 0.41 5.97 -1.90 -0.01 0.40 16 5 N -0.49 -7.63 4.91 -231.89 -1.14 -8.76 16 6 C 0.03 0.55 5.27 -4.98 -0.03 0.53 16 7 C 0.45 10.44 7.61 -10.99 -0.08 10.35 16 8 O -0.56 -15.15 14.87 5.54 0.08 -15.07 16 9 N -0.59 -14.32 5.09 -10.96 -0.06 -14.37 16 10 C -0.30 -8.68 10.16 -14.93 -0.15 -8.83 16 11 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 12 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 13 N -0.88 -26.12 13.96 55.50 0.77 -25.35 16 14 Si 0.88 19.57 27.74 -169.99 -4.71 14.86 16 15 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 16 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.27 -5.47 6.52 56.52 0.37 -5.10 16 18 C 0.03 0.52 5.66 -2.75 -0.02 0.51 16 19 C 0.14 1.63 2.92 -66.57 -0.19 1.44 16 20 H 0.10 1.20 7.26 -51.93 -0.38 0.82 16 21 N -0.69 -8.09 5.01 -53.46 -0.27 -8.36 16 22 C 0.61 7.77 7.82 -12.37 -0.10 7.68 16 23 O -0.52 -7.97 16.45 5.31 0.09 -7.88 16 24 C 0.01 0.15 6.81 -83.71 -0.57 -0.42 16 25 C 0.09 0.92 11.22 -17.87 -0.20 0.72 16 26 N -0.58 -5.67 11.41 19.42 0.22 -5.45 16 27 S 0.72 5.56 23.69 -107.50 -2.55 3.01 16 28 N -0.55 -5.53 11.00 23.17 0.25 -5.28 16 29 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.43 8.11 -51.93 -0.42 0.00 16 32 H 0.05 0.47 7.91 -51.93 -0.41 0.06 16 33 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.78 7.73 -51.93 -0.40 0.38 16 35 H 0.09 1.31 8.08 -51.93 -0.42 0.89 16 36 H 0.37 7.81 5.76 -40.82 -0.24 7.58 16 37 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.10 1.89 7.31 -51.93 -0.38 1.51 16 39 H 0.05 0.82 7.52 -51.93 -0.39 0.43 16 40 H 0.41 4.32 7.97 -40.82 -0.33 3.99 16 41 H 0.22 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 359.92 15.07 5.42 5.42 Total: -1.00 -35.37 359.92 -8.29 -43.67 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -5.01 Total: 12.11 kcal Atomic # 6 Polarization: 12.85 SS G_CDS: -1.40 Total: 11.45 kcal Atomic # 7 Polarization: -67.36 SS G_CDS: -0.21 Total: -67.57 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: 0.17 Total: -22.94 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.71 Total: 14.86 kcal Atomic # 16 Polarization: 5.56 SS G_CDS: -2.55 Total: 3.01 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.37 -8.29 -43.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206286566.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.261 kcal (2) G-P(sol) polarization free energy of solvation -35.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds