Wall clock time and date at job start Tue Mar 31 2020 22:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86804 * 119.99656 * 2 1 4 4 H 1.48499 * 109.46872 * 269.99977 * 3 2 1 5 5 H 1.48495 * 109.47422 * 30.00007 * 3 2 1 6 6 H 1.48499 * 109.47105 * 150.00194 * 3 2 1 7 7 C 1.38940 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00161 * 0.02562 * 7 2 1 9 9 N 1.37105 * 119.99877 * 179.97438 * 7 2 1 10 10 C 1.34776 * 119.99620 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00441 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99747 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.47246 * 180.02562 * 12 10 9 14 14 C 1.46894 * 111.00033 * 180.02562 * 13 12 10 15 15 H 1.08996 * 109.50263 * 324.93737 * 14 13 12 16 16 C 1.53036 * 109.49994 * 204.83643 * 14 13 12 17 17 C 1.53043 * 109.54181 * 178.68384 * 16 14 13 18 18 C 1.53191 * 109.31018 * 61.36587 * 17 16 14 19 19 N 1.46924 * 108.77529 * 305.36643 * 18 17 16 20 20 C 1.34779 * 120.62675 * 233.58621 * 19 18 17 21 21 O 1.21572 * 119.99616 * 172.22368 * 20 19 18 22 22 C 1.47750 * 120.00270 * 352.23233 * 20 19 18 23 23 C 1.39357 * 124.11404 * 172.24719 * 22 20 19 24 24 N 1.30096 * 112.14037 * 179.97438 * 23 22 20 25 25 S 1.55916 * 108.75625 * 359.97438 * 24 23 22 26 26 N 1.31480 * 124.11697 * 351.94109 * 22 20 19 27 27 C 1.46918 * 118.74258 * 53.61263 * 19 18 17 28 28 H 0.97005 * 120.00109 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99642 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.46976 * 60.00274 * 12 10 9 31 31 H 1.09002 * 109.47002 * 300.00161 * 12 10 9 32 32 H 1.00899 * 111.00063 * 56.04673 * 13 12 10 33 33 H 1.09002 * 109.45970 * 298.70636 * 16 14 13 34 34 H 1.08996 * 109.45957 * 58.66215 * 16 14 13 35 35 H 1.08993 * 109.49400 * 301.41688 * 17 16 14 36 36 H 1.08999 * 109.49758 * 181.31759 * 17 16 14 37 37 H 1.09006 * 109.58452 * 185.57671 * 18 17 16 38 38 H 1.09004 * 109.58767 * 65.15412 * 18 17 16 39 39 H 1.07994 * 123.93094 * 359.93472 * 23 22 20 40 40 H 1.09003 * 109.59126 * 186.60308 * 27 19 18 41 41 H 1.08996 * 109.70642 * 66.24335 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2032 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3799 -1.2032 0.0000 10 6 4.0538 -2.3704 0.0011 11 8 3.4474 -3.4208 0.0020 12 6 5.5608 -2.3704 -0.0001 13 7 6.0505 -3.7553 0.0007 14 6 7.5189 -3.7945 0.0003 15 1 7.9049 -2.9639 -0.5907 16 6 7.9945 -5.1172 -0.6049 17 6 9.5244 -5.1452 -0.6360 18 6 10.0620 -5.0473 0.7951 19 7 9.4932 -3.8523 1.4333 20 6 10.2948 -2.9309 2.0033 21 8 9.8274 -1.8818 2.4018 22 6 11.7415 -3.1958 2.1438 23 6 12.6709 -2.2508 2.5743 24 7 13.8786 -2.7329 2.6125 25 16 13.8386 -4.2224 2.1532 26 7 12.3080 -4.3534 1.8835 27 6 8.0340 -3.6812 1.4387 28 1 -0.4850 0.8401 -0.0004 29 1 3.8648 -0.3631 -0.0004 30 1 5.9248 -1.8554 0.8889 31 1 5.9234 -1.8577 -0.8911 32 1 5.6744 -4.2723 -0.7799 33 1 7.6284 -5.9461 0.0010 34 1 7.6089 -5.2116 -1.6199 35 1 9.8917 -4.3023 -1.2211 36 1 9.8620 -6.0776 -1.0885 37 1 11.1489 -4.9671 0.7725 38 1 9.7707 -5.9351 1.3565 39 1 12.4181 -1.2361 2.8441 40 1 7.7826 -2.6996 1.8405 41 1 7.5753 -4.4559 2.0530 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207505652.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:46 Heat of formation + Delta-G solvation = 15.878450 kcal Electronic energy + Delta-G solvation = -26573.911504 eV Core-core repulsion = 22616.902788 eV Total energy + Delta-G solvation = -3957.008717 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.74413 -39.92656 -38.54337 -37.74035 -35.40103 -34.13910 -33.79642 -32.55222 -31.64121 -30.11136 -28.16275 -26.54068 -25.72413 -24.02627 -23.16123 -22.33921 -20.93452 -20.02557 -19.64879 -19.31686 -18.29562 -17.46060 -16.69387 -16.59065 -16.02654 -15.84142 -15.39088 -15.17146 -14.96332 -14.59966 -14.56990 -14.11322 -13.97078 -13.50916 -13.21883 -13.02341 -12.82389 -12.71450 -12.47272 -12.17221 -12.11715 -11.83314 -11.77129 -11.62651 -11.50308 -11.23143 -11.13034 -10.72639 -10.61481 -10.56572 -10.14553 -9.95436 -9.72262 -9.55242 -8.99222 -8.57007 -8.21810 -8.14868 -6.29230 -3.80642 -0.12064 0.86613 1.08157 1.10831 2.54738 2.70657 3.06373 3.09684 3.17783 3.75715 3.86399 4.03002 4.12849 4.14156 4.58014 4.59635 4.64992 4.72421 4.80733 5.00764 5.04882 5.12006 5.23324 5.32578 5.38249 5.58999 5.60103 5.65384 5.69787 5.78387 5.81462 5.88741 5.90851 5.95649 6.09328 6.19992 6.98518 7.07664 7.53191 7.60089 7.68001 8.16187 8.61571 8.96700 9.44463 9.84366 10.83789 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020044 B = 0.002271 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.610338 B =12327.775593 C =13449.721599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.041 3.959 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.304 4.304 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.451 3.549 11 O -0.565 6.565 12 C 0.046 3.954 13 N -0.661 5.661 14 C 0.076 3.924 15 H 0.047 0.953 16 C -0.124 4.124 17 C -0.131 4.131 18 C 0.084 3.916 19 N -0.588 5.588 20 C 0.601 3.399 21 O -0.520 6.520 22 C 0.018 3.982 23 C 0.091 3.909 24 N -0.573 5.573 25 S 0.702 5.298 26 N -0.539 5.539 27 C 0.121 3.879 28 H 0.273 0.727 29 H 0.371 0.629 30 H 0.089 0.911 31 H 0.046 0.954 32 H 0.356 0.644 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.129 0.871 38 H 0.072 0.928 39 H 0.216 0.784 40 H 0.095 0.905 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.626 -8.851 1.157 32.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.162 4.162 3 Si 0.705 3.295 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.236 3.764 11 O -0.447 6.447 12 C -0.087 4.087 13 N -0.295 5.295 14 C -0.035 4.035 15 H 0.065 0.935 16 C -0.162 4.162 17 C -0.170 4.170 18 C -0.041 4.041 19 N -0.321 5.321 20 C 0.382 3.618 21 O -0.395 6.395 22 C -0.157 4.157 23 C -0.102 4.102 24 N -0.413 5.413 25 S 0.745 5.255 26 N -0.388 5.388 27 C -0.002 4.002 28 H 0.084 0.916 29 H 0.204 0.796 30 H 0.107 0.893 31 H 0.064 0.936 32 H 0.177 0.823 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.146 0.854 38 H 0.090 0.910 39 H 0.232 0.768 40 H 0.113 0.887 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 32.285 -10.325 1.893 33.949 hybrid contribution -0.643 2.895 -0.743 3.057 sum 31.642 -7.430 1.150 32.523 Atomic orbital electron populations 1.69624 1.05638 1.27490 1.49395 1.25039 0.95503 0.97996 0.97635 0.86678 0.79915 0.84024 0.78860 1.19682 1.20151 1.19347 1.19427 0.79228 0.96621 1.48038 0.86272 1.42216 1.07553 1.06198 1.67011 1.19673 0.88114 0.84568 0.84003 1.90561 1.69426 1.30916 1.53807 1.21800 0.95102 0.90288 1.01464 1.59915 1.04873 1.12927 1.51813 1.21795 0.88706 0.97424 0.95587 0.93477 1.21741 0.95210 0.97719 1.01491 1.21918 0.95822 1.02617 0.96626 1.22646 1.01889 0.86923 0.92598 1.47875 1.07133 1.22070 1.54979 1.16828 0.82522 0.83577 0.78837 1.90864 1.74261 1.24339 1.50051 1.22574 0.98517 0.88648 1.05912 1.23817 0.84721 1.03391 0.98292 1.72277 1.28369 1.16657 1.24045 1.79254 1.02205 1.03438 1.40553 1.72811 1.14680 1.28259 1.23100 1.21754 0.76650 1.04505 0.97279 0.91627 0.79646 0.89328 0.93636 0.82327 0.90406 0.91357 0.91764 0.90238 0.85413 0.91013 0.76805 0.88669 0.89745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.97 13.96 55.50 0.77 -25.20 16 2 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 3 Si 0.88 19.69 27.74 -169.99 -4.71 14.97 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.27 -5.53 6.52 56.52 0.37 -5.16 16 7 C -0.30 -8.70 10.16 -14.93 -0.15 -8.85 16 8 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 9 N -0.59 -14.26 5.09 -10.96 -0.06 -14.31 16 10 C 0.45 10.29 7.82 -10.98 -0.09 10.20 16 11 O -0.57 -15.15 15.78 5.55 0.09 -15.06 16 12 C 0.05 0.77 5.97 -4.98 -0.03 0.74 16 13 N -0.66 -9.93 5.93 -107.86 -0.64 -10.57 16 14 C 0.08 0.89 2.64 -67.59 -0.18 0.71 16 15 H 0.05 0.57 7.80 -51.93 -0.41 0.16 16 16 C -0.12 -1.13 5.17 -26.69 -0.14 -1.27 16 17 C -0.13 -0.97 6.08 -26.61 -0.16 -1.13 16 18 C 0.08 0.68 6.02 -3.71 -0.02 0.65 16 19 N -0.59 -6.21 2.97 -173.91 -0.52 -6.72 16 20 C 0.60 6.89 7.67 -12.37 -0.09 6.80 16 21 O -0.52 -7.44 16.25 5.30 0.09 -7.36 16 22 C 0.02 0.16 6.56 -83.71 -0.55 -0.39 16 23 C 0.09 0.73 11.23 -17.87 -0.20 0.53 16 24 N -0.57 -4.45 11.41 19.43 0.22 -4.23 16 25 S 0.70 3.75 23.69 -107.50 -2.55 1.21 16 26 N -0.54 -4.02 7.74 23.17 0.18 -3.84 16 27 C 0.12 1.45 5.91 -3.71 -0.02 1.42 16 28 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.37 7.93 5.76 -40.82 -0.24 7.69 16 30 H 0.09 1.39 7.56 -51.93 -0.39 1.00 16 31 H 0.05 0.68 8.06 -51.93 -0.42 0.26 16 32 H 0.36 5.44 8.04 -39.29 -0.32 5.13 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.13 0.97 4.16 -65.81 -0.27 0.70 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.22 1.42 8.06 -52.49 -0.42 1.00 16 40 H 0.09 1.31 6.47 -51.93 -0.34 0.97 16 41 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 352.43 15.07 5.31 5.31 Total: -1.00 -34.56 352.43 -8.43 -43.00 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -4.89 Total: 12.33 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: -1.73 Total: 10.48 kcal Atomic # 7 Polarization: -64.83 SS G_CDS: -0.04 Total: -64.87 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: 0.17 Total: -22.42 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -4.71 Total: 14.97 kcal Atomic # 16 Polarization: 3.75 SS G_CDS: -2.55 Total: 1.21 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.56 -8.43 -43.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207505652.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.876 kcal (2) G-P(sol) polarization free energy of solvation -34.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds