Wall clock time and date at job start Tue Mar 31 2020 22:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86804 * 119.99656 * 2 1 4 4 H 1.48499 * 109.46872 * 269.99977 * 3 2 1 5 5 H 1.48495 * 109.47422 * 30.00007 * 3 2 1 6 6 H 1.48499 * 109.47105 * 150.00194 * 3 2 1 7 7 C 1.38940 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00161 * 0.02562 * 7 2 1 9 9 N 1.37105 * 119.99877 * 179.97438 * 7 2 1 10 10 C 1.34776 * 119.99620 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00441 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99747 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.47246 * 180.02562 * 12 10 9 14 14 C 1.46894 * 111.00033 * 180.02562 * 13 12 10 15 15 H 1.08996 * 109.50263 * 324.93737 * 14 13 12 16 16 C 1.53036 * 109.49994 * 204.83643 * 14 13 12 17 17 C 1.53043 * 109.54181 * 178.68384 * 16 14 13 18 18 C 1.53191 * 109.31018 * 61.36587 * 17 16 14 19 19 N 1.46924 * 108.77529 * 305.36643 * 18 17 16 20 20 C 1.34779 * 120.62675 * 233.58621 * 19 18 17 21 21 O 1.21572 * 119.99616 * 172.22368 * 20 19 18 22 22 C 1.47750 * 120.00270 * 352.23233 * 20 19 18 23 23 C 1.39357 * 124.11404 * 172.24719 * 22 20 19 24 24 N 1.30096 * 112.14037 * 179.97438 * 23 22 20 25 25 S 1.55916 * 108.75625 * 359.97438 * 24 23 22 26 26 N 1.31480 * 124.11697 * 351.94109 * 22 20 19 27 27 C 1.46918 * 118.74258 * 53.61263 * 19 18 17 28 28 H 0.97005 * 120.00109 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99642 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.46976 * 60.00274 * 12 10 9 31 31 H 1.09002 * 109.47002 * 300.00161 * 12 10 9 32 32 H 1.00899 * 111.00063 * 56.04673 * 13 12 10 33 33 H 1.09002 * 109.45970 * 298.70636 * 16 14 13 34 34 H 1.08996 * 109.45957 * 58.66215 * 16 14 13 35 35 H 1.08993 * 109.49400 * 301.41688 * 17 16 14 36 36 H 1.08999 * 109.49758 * 181.31759 * 17 16 14 37 37 H 1.09006 * 109.58452 * 185.57671 * 18 17 16 38 38 H 1.09004 * 109.58767 * 65.15412 * 18 17 16 39 39 H 1.07994 * 123.93094 * 359.93472 * 23 22 20 40 40 H 1.09003 * 109.59126 * 186.60308 * 27 19 18 41 41 H 1.08996 * 109.70642 * 66.24335 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2032 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3799 -1.2032 0.0000 10 6 4.0538 -2.3704 0.0011 11 8 3.4474 -3.4208 0.0020 12 6 5.5608 -2.3704 -0.0001 13 7 6.0505 -3.7553 0.0007 14 6 7.5189 -3.7945 0.0003 15 1 7.9049 -2.9639 -0.5907 16 6 7.9945 -5.1172 -0.6049 17 6 9.5244 -5.1452 -0.6360 18 6 10.0620 -5.0473 0.7951 19 7 9.4932 -3.8523 1.4333 20 6 10.2948 -2.9309 2.0033 21 8 9.8274 -1.8818 2.4018 22 6 11.7415 -3.1958 2.1438 23 6 12.6709 -2.2508 2.5743 24 7 13.8786 -2.7329 2.6125 25 16 13.8386 -4.2224 2.1532 26 7 12.3080 -4.3534 1.8835 27 6 8.0340 -3.6812 1.4387 28 1 -0.4850 0.8401 -0.0004 29 1 3.8648 -0.3631 -0.0004 30 1 5.9248 -1.8554 0.8889 31 1 5.9234 -1.8577 -0.8911 32 1 5.6744 -4.2723 -0.7799 33 1 7.6284 -5.9461 0.0010 34 1 7.6089 -5.2116 -1.6199 35 1 9.8917 -4.3023 -1.2211 36 1 9.8620 -6.0776 -1.0885 37 1 11.1489 -4.9671 0.7725 38 1 9.7707 -5.9351 1.3565 39 1 12.4181 -1.2361 2.8441 40 1 7.7826 -2.6996 1.8405 41 1 7.5753 -4.4559 2.0530 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207505652.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:45 Heat of formation + Delta-G solvation = -12.611022 kcal Electronic energy + Delta-G solvation = -26575.146901 eV Core-core repulsion = 22616.902788 eV Total energy + Delta-G solvation = -3958.244113 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.39199 -40.76897 -40.22407 -38.76714 -36.52164 -35.87555 -34.69164 -33.76634 -33.33440 -31.14679 -28.94106 -27.99384 -26.53435 -25.65090 -23.87373 -23.24509 -21.75446 -21.27915 -20.60051 -20.41067 -20.17115 -18.28333 -17.77451 -17.42710 -17.20899 -16.92643 -16.75848 -16.23443 -15.95242 -15.89789 -15.64330 -15.21834 -15.03411 -14.95837 -14.43724 -14.33452 -14.09670 -13.87382 -13.64737 -13.32727 -13.22856 -12.96691 -12.66872 -12.46685 -12.42584 -12.34672 -12.24122 -11.99379 -11.95243 -11.52810 -11.51395 -11.45434 -10.81825 -10.45989 -10.26908 -10.26025 -9.81168 -9.39360 -8.42305 -6.02977 -0.70795 0.31815 0.43110 0.61585 1.30495 1.33837 1.43301 1.77088 1.92513 1.93078 2.21721 2.68822 3.13956 3.23073 3.34689 3.48390 3.76649 3.89265 3.98452 4.07965 4.13196 4.16747 4.28880 4.37844 4.47425 4.47688 4.58922 4.62746 4.80418 4.92287 5.00967 5.04180 5.14500 5.28057 5.32811 5.43993 5.52435 5.88936 6.00475 6.21801 6.34803 6.58131 6.85734 6.86434 7.38058 7.93528 8.75115 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020044 B = 0.002271 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.610338 B =12327.775593 C =13449.721599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.962 3.038 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.328 4.328 8 H 0.058 0.942 9 N -0.592 5.592 10 C 0.451 3.549 11 O -0.611 6.611 12 C 0.061 3.939 13 N -0.675 5.675 14 C 0.082 3.918 15 H 0.050 0.950 16 C -0.120 4.120 17 C -0.123 4.123 18 C 0.082 3.918 19 N -0.587 5.587 20 C 0.597 3.403 21 O -0.559 6.559 22 C -0.001 4.001 23 C 0.088 3.912 24 N -0.598 5.598 25 S 0.790 5.210 26 N -0.548 5.548 27 C 0.124 3.876 28 H 0.279 0.721 29 H 0.389 0.611 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.353 0.647 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.104 0.896 37 H 0.138 0.862 38 H 0.077 0.923 39 H 0.220 0.780 40 H 0.075 0.925 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.758 -8.420 0.602 36.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.213 4.213 3 Si 0.782 3.218 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.457 4.457 8 H 0.076 0.924 9 N -0.233 5.233 10 C 0.239 3.761 11 O -0.495 6.495 12 C -0.071 4.071 13 N -0.309 5.309 14 C -0.028 4.028 15 H 0.068 0.932 16 C -0.158 4.158 17 C -0.161 4.161 18 C -0.042 4.042 19 N -0.319 5.319 20 C 0.381 3.619 21 O -0.437 6.437 22 C -0.173 4.173 23 C -0.103 4.103 24 N -0.440 5.440 25 S 0.834 5.166 26 N -0.400 5.400 27 C 0.000 4.000 28 H 0.089 0.911 29 H 0.224 0.776 30 H 0.122 0.878 31 H 0.094 0.906 32 H 0.174 0.826 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.123 0.877 37 H 0.155 0.845 38 H 0.096 0.904 39 H 0.236 0.764 40 H 0.093 0.907 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 36.443 -9.908 1.331 37.790 hybrid contribution -1.841 2.521 -0.554 3.170 sum 34.602 -7.388 0.777 35.390 Atomic orbital electron populations 1.69798 1.08020 1.29231 1.50254 1.26082 0.96474 1.02602 0.96118 0.85398 0.79414 0.76975 0.79982 1.17983 1.19913 1.15898 1.19012 0.81380 0.94993 1.50291 0.92414 1.42060 1.05928 1.07605 1.67734 1.20854 0.90722 0.83352 0.81188 1.90538 1.71276 1.32614 1.55072 1.21677 0.89865 0.92030 1.03564 1.59884 1.07112 1.11866 1.52039 1.21812 0.86378 0.99100 0.95532 0.93208 1.21729 0.96617 0.95941 1.01489 1.21896 0.94113 1.03925 0.96205 1.22840 1.02432 0.86009 0.92893 1.47945 1.06403 1.22668 1.54845 1.17137 0.83579 0.83083 0.78129 1.90830 1.75287 1.25883 1.51674 1.22122 0.97368 0.89531 1.08280 1.23810 0.84643 1.03658 0.98178 1.72162 1.28398 1.18429 1.25035 1.78944 0.99611 1.01150 1.36939 1.72540 1.16331 1.27947 1.23232 1.21578 0.77917 1.03144 0.97322 0.91114 0.77582 0.87776 0.90604 0.82607 0.90659 0.90702 0.91810 0.87723 0.84499 0.90426 0.76400 0.90673 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.82 13.96 21.66 0.30 -56.51 16 2 C -0.01 -0.79 5.50 84.92 0.47 -0.32 16 3 Si 0.96 39.85 27.74 68.60 1.90 41.75 16 4 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 5 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 6 H -0.24 -8.45 6.52 99.48 0.65 -7.80 16 7 C -0.33 -19.49 10.16 84.04 0.85 -18.63 16 8 H 0.06 4.06 7.39 -2.91 -0.02 4.04 16 9 N -0.59 -28.65 5.09 -306.98 -1.56 -30.21 16 10 C 0.45 20.77 7.82 87.66 0.69 21.45 16 11 O -0.61 -34.01 15.78 -3.05 -0.05 -34.06 16 12 C 0.06 1.96 5.97 85.56 0.51 2.47 16 13 N -0.68 -19.72 5.93 -495.17 -2.94 -22.66 16 14 C 0.08 1.80 2.64 45.00 0.12 1.92 16 15 H 0.05 1.09 7.80 -2.39 -0.02 1.07 16 16 C -0.12 -1.95 5.17 30.62 0.16 -1.79 16 17 C -0.12 -1.46 6.08 30.67 0.19 -1.27 16 18 C 0.08 1.13 6.02 86.36 0.52 1.65 16 19 N -0.59 -11.74 2.97 -822.40 -2.44 -14.19 16 20 C 0.60 13.36 7.67 86.76 0.67 14.03 16 21 O -0.56 -16.12 16.25 -3.94 -0.06 -16.18 16 22 C 0.00 -0.02 6.56 41.98 0.28 0.26 16 23 C 0.09 1.31 11.23 85.22 0.96 2.27 16 24 N -0.60 -8.01 11.41 -92.45 -1.05 -9.06 16 25 S 0.79 6.08 23.69 -56.49 -1.34 4.74 16 26 N -0.55 -6.84 7.74 -80.60 -0.62 -7.46 16 27 C 0.12 2.89 5.91 86.37 0.51 3.40 16 28 H 0.28 15.55 8.31 -92.70 -0.77 14.78 16 29 H 0.39 15.84 5.76 -92.71 -0.53 15.31 16 30 H 0.10 3.08 7.56 -2.39 -0.02 3.07 16 31 H 0.08 2.03 8.06 -2.39 -0.02 2.01 16 32 H 0.35 10.63 8.04 -89.69 -0.72 9.91 16 33 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.07 1.15 8.10 -2.39 -0.02 1.13 16 35 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.14 1.70 4.16 -29.80 -0.12 1.58 16 38 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.22 2.81 8.06 -2.91 -0.02 2.78 16 40 H 0.07 2.07 6.47 -2.39 -0.02 2.05 16 41 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -80.31 352.43 -2.28 -82.59 By element: Atomic # 1 Polarization: 36.14 SS G_CDS: -0.32 Total: 35.82 kcal Atomic # 6 Polarization: 19.52 SS G_CDS: 5.91 Total: 25.43 kcal Atomic # 7 Polarization: -131.77 SS G_CDS: -8.32 Total: -140.09 kcal Atomic # 8 Polarization: -50.13 SS G_CDS: -0.11 Total: -50.24 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 1.90 Total: 41.75 kcal Atomic # 16 Polarization: 6.08 SS G_CDS: -1.34 Total: 4.74 kcal Total: -80.31 -2.28 -82.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207505652.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.980 kcal (2) G-P(sol) polarization free energy of solvation -80.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds