Wall clock time and date at job start Tue Mar 31 2020 22:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86799 * 120.00310 * 2 1 4 4 H 1.48496 * 109.47318 * 240.00798 * 3 2 1 5 5 H 1.48508 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47250 * 120.00201 * 3 2 1 7 7 C 1.38957 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99900 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99761 * 359.97438 * 7 2 1 10 10 C 1.34780 * 120.00021 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99499 * 0.02562 * 10 9 7 12 12 C 1.50693 * 120.00081 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.47407 * 180.02562 * 12 10 9 14 14 C 1.46896 * 111.00574 * 180.02562 * 13 12 10 15 15 H 1.09000 * 109.49905 * 34.92810 * 14 13 12 16 16 C 1.53035 * 109.50182 * 155.00008 * 14 13 12 17 17 C 1.53040 * 109.53944 * 181.31397 * 16 14 13 18 18 C 1.53190 * 109.31532 * 298.63435 * 17 16 14 19 19 N 1.46924 * 108.77423 * 54.63200 * 18 17 16 20 20 C 1.34778 * 120.63099 * 126.36695 * 19 18 17 21 21 O 1.21571 * 120.00466 * 187.85720 * 20 19 18 22 22 C 1.47751 * 119.99904 * 7.86037 * 20 19 18 23 23 C 1.39349 * 124.11803 * 187.63466 * 22 20 19 24 24 N 1.30089 * 112.14494 * 179.73526 * 23 22 20 25 25 S 1.55926 * 108.75667 * 359.97438 * 24 23 22 26 26 N 1.31497 * 124.11686 * 7.33682 * 22 20 19 27 27 C 1.46930 * 118.74317 * 306.64601 * 19 18 17 28 28 H 0.96999 * 119.99580 * 359.97438 * 1 2 3 29 29 H 0.97004 * 120.00581 * 0.02562 * 9 7 2 30 30 H 1.09002 * 109.47287 * 59.99824 * 12 10 9 31 31 H 1.09009 * 109.47307 * 299.99855 * 12 10 9 32 32 H 1.00903 * 110.99372 * 303.95589 * 13 12 10 33 33 H 1.08997 * 109.45823 * 61.29255 * 16 14 13 34 34 H 1.09005 * 109.44787 * 301.33121 * 16 14 13 35 35 H 1.09002 * 109.49602 * 178.68008 * 17 16 14 36 36 H 1.08998 * 109.49520 * 58.58766 * 17 16 14 37 37 H 1.09000 * 109.58461 * 294.84751 * 18 17 16 38 38 H 1.08997 * 109.70175 * 174.49149 * 18 17 16 39 39 H 1.08001 * 123.92699 * 359.73408 * 23 22 20 40 40 H 1.09002 * 109.58876 * 173.14248 * 27 19 18 41 41 H 1.08999 * 109.58235 * 293.57342 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2832 2.7465 0.0006 6 1 3.1020 1.6963 1.2124 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2102 -3.5579 -0.0001 12 6 1.2437 -4.8629 -0.0011 13 7 2.1982 -5.9796 -0.0004 14 6 1.4980 -7.2709 -0.0015 15 1 0.5847 -7.1889 -0.5908 16 6 2.4044 -8.3430 -0.6105 17 6 1.6637 -9.6819 -0.6422 18 6 1.3132 -10.1010 0.7890 19 7 0.5642 -9.0120 1.4307 20 6 -0.6338 -9.2461 2.0022 21 8 -1.3084 -8.3173 2.4024 22 6 -1.1272 -10.6318 2.1423 23 6 -2.4087 -10.9649 2.5765 24 7 -2.5968 -12.2518 2.6077 25 16 -1.2904 -12.9610 2.1370 26 7 -0.4123 -11.7006 1.8673 27 6 1.1430 -7.6615 1.4321 28 1 -0.4849 0.8401 0.0004 29 1 0.3533 -2.3907 -0.0005 30 1 0.6173 -4.9205 -0.8913 31 1 0.6167 -4.9209 0.8887 32 1 2.8337 -5.9125 -0.7813 33 1 3.3066 -8.4414 -0.0069 34 1 2.6765 -8.0544 -1.6258 35 1 2.3013 -10.4397 -1.0974 36 1 0.7486 -9.5776 -1.2252 37 1 2.2289 -10.2935 1.3480 38 1 0.7012 -11.0027 0.7684 39 1 -3.1586 -10.2392 2.8547 40 1 0.4178 -6.9535 1.8334 41 1 2.0446 -7.6511 2.0445 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207505653.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:49 Heat of formation + Delta-G solvation = 9.039413 kcal Electronic energy + Delta-G solvation = -26498.724143 eV Core-core repulsion = 22541.418863 eV Total energy + Delta-G solvation = -3957.305280 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.69878 -39.87410 -38.38195 -37.63950 -35.32037 -34.08734 -33.73124 -32.48769 -31.20449 -30.00871 -28.10205 -26.37560 -25.66666 -24.15267 -23.12002 -22.33439 -20.87419 -19.98031 -19.59471 -19.14783 -17.84861 -17.41021 -16.64176 -16.54840 -15.98656 -15.81019 -15.30741 -15.02757 -14.87031 -14.50110 -14.41941 -14.07238 -13.82373 -13.68431 -13.32517 -12.94392 -12.79737 -12.66126 -12.25365 -12.05172 -11.79200 -11.73956 -11.61043 -11.49027 -11.37528 -11.16918 -10.99517 -10.66845 -10.54307 -10.42164 -10.18987 -10.08334 -9.67945 -9.47606 -8.93028 -8.43702 -8.09822 -7.93653 -6.38821 -3.79776 -0.08065 0.90668 1.12754 1.14887 2.60116 2.76459 3.22142 3.27717 3.32101 3.91345 3.93080 4.07996 4.18689 4.29538 4.62818 4.65327 4.70312 4.84589 4.94018 5.05377 5.17828 5.22788 5.28535 5.39255 5.44536 5.63820 5.70761 5.71221 5.82568 5.84346 5.93500 5.95934 6.02479 6.12016 6.24243 6.32970 7.04979 7.19935 7.57548 7.62921 7.73915 8.08564 8.63872 9.20216 9.57041 10.08342 10.78813 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024041 B = 0.002081 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.412843 B =13449.457159 C =14383.084308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.441 3.559 11 O -0.584 6.584 12 C 0.049 3.951 13 N -0.661 5.661 14 C 0.076 3.924 15 H 0.047 0.953 16 C -0.123 4.123 17 C -0.131 4.131 18 C 0.083 3.917 19 N -0.588 5.588 20 C 0.600 3.400 21 O -0.519 6.519 22 C 0.019 3.981 23 C 0.091 3.909 24 N -0.572 5.572 25 S 0.699 5.301 26 N -0.539 5.539 27 C 0.121 3.879 28 H 0.272 0.728 29 H 0.393 0.607 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.354 0.646 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.130 0.870 39 H 0.216 0.784 40 H 0.096 0.904 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.733 -28.756 1.160 29.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.199 5.199 10 C 0.227 3.773 11 O -0.469 6.469 12 C -0.084 4.084 13 N -0.295 5.295 14 C -0.035 4.035 15 H 0.065 0.935 16 C -0.161 4.161 17 C -0.170 4.170 18 C -0.041 4.041 19 N -0.321 5.321 20 C 0.382 3.618 21 O -0.394 6.394 22 C -0.156 4.156 23 C -0.102 4.102 24 N -0.413 5.413 25 S 0.743 5.257 26 N -0.389 5.389 27 C -0.002 4.002 28 H 0.082 0.918 29 H 0.226 0.774 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.175 0.825 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.147 0.853 39 H 0.232 0.768 40 H 0.114 0.886 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.943 -30.136 1.882 30.338 hybrid contribution -0.915 2.623 -0.753 2.878 sum -3.858 -27.514 1.129 27.806 Atomic orbital electron populations 1.69610 1.05931 1.28264 1.50439 1.25274 0.95640 0.99735 0.97328 0.85912 0.78747 0.80462 0.79051 1.19941 1.20994 1.19875 1.19650 0.93329 0.82238 1.47730 0.87968 1.41863 1.09243 1.04598 1.64245 1.19773 0.88351 0.84684 0.84528 1.90518 1.13724 1.87074 1.55547 1.21763 0.94311 0.90909 1.01379 1.59949 1.18682 0.99225 1.51631 1.21707 0.96270 0.89987 0.95581 0.93529 1.21742 0.98964 0.94009 1.01430 1.21916 1.00858 0.97579 0.96631 1.22656 0.97902 0.91030 0.92540 1.47880 1.18475 1.10836 1.54870 1.16829 0.81247 0.84829 0.78931 1.90871 1.55780 1.42739 1.49977 1.22592 0.92846 0.94436 1.05700 1.23821 0.96859 0.91187 0.98331 1.72279 1.32426 1.12568 1.24053 1.79243 0.89374 1.16647 1.40386 1.72813 1.36693 1.06210 1.23139 1.21671 0.99534 0.81583 0.97368 0.91810 0.77412 0.93763 0.89457 0.82520 0.90482 0.91407 0.90294 0.91752 0.91087 0.85335 0.76769 0.88596 0.89845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.89 13.05 55.50 0.72 -24.17 16 2 C 0.02 0.59 5.50 -17.46 -0.10 0.50 16 3 Si 0.93 21.30 29.55 -169.99 -5.02 16.27 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.30 -8.47 9.68 -14.93 -0.14 -8.61 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 9 N -0.56 -14.52 5.29 -10.96 -0.06 -14.58 16 10 C 0.44 10.54 7.82 -10.99 -0.09 10.45 16 11 O -0.58 -15.91 15.78 5.55 0.09 -15.82 16 12 C 0.05 0.88 5.97 -4.98 -0.03 0.85 16 13 N -0.66 -10.50 5.94 -108.10 -0.64 -11.14 16 14 C 0.08 0.94 2.63 -67.82 -0.18 0.77 16 15 H 0.05 0.61 7.80 -51.93 -0.41 0.20 16 16 C -0.12 -1.21 5.17 -26.69 -0.14 -1.35 16 17 C -0.13 -1.04 6.08 -26.61 -0.16 -1.20 16 18 C 0.08 0.71 6.03 -3.71 -0.02 0.69 16 19 N -0.59 -6.57 2.98 -174.17 -0.52 -7.09 16 20 C 0.60 7.24 7.67 -12.37 -0.09 7.15 16 21 O -0.52 -7.78 16.24 5.30 0.09 -7.69 16 22 C 0.02 0.18 6.57 -83.71 -0.55 -0.37 16 23 C 0.09 0.78 11.23 -17.88 -0.20 0.58 16 24 N -0.57 -4.66 11.41 19.43 0.22 -4.44 16 25 S 0.70 3.99 23.69 -107.50 -2.55 1.44 16 26 N -0.54 -4.24 7.72 23.18 0.18 -4.06 16 27 C 0.12 1.54 5.88 -3.93 -0.02 1.52 16 28 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.39 9.74 7.90 -40.82 -0.32 9.42 16 30 H 0.04 0.73 8.06 -51.93 -0.42 0.31 16 31 H 0.09 1.51 7.56 -51.92 -0.39 1.12 16 32 H 0.35 5.71 8.03 -39.29 -0.32 5.40 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.13 1.04 4.13 -67.24 -0.28 0.76 16 39 H 0.22 1.52 8.06 -52.49 -0.42 1.10 16 40 H 0.10 1.41 6.47 -51.93 -0.34 1.07 16 41 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 355.48 15.07 5.36 5.36 Total: -1.00 -33.39 355.48 -8.79 -42.18 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -4.93 Total: 12.77 kcal Atomic # 6 Polarization: 12.69 SS G_CDS: -1.73 Total: 10.96 kcal Atomic # 7 Polarization: -65.38 SS G_CDS: -0.09 Total: -65.47 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: 0.17 Total: -23.51 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -2.55 Total: 1.44 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.39 -8.79 -42.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207505653.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.218 kcal (2) G-P(sol) polarization free energy of solvation -33.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds