Wall clock time and date at job start Tue Mar 31 2020 22:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86799 * 120.00310 * 2 1 4 4 H 1.48496 * 109.47318 * 240.00798 * 3 2 1 5 5 H 1.48508 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47250 * 120.00201 * 3 2 1 7 7 C 1.38957 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99900 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99761 * 359.97438 * 7 2 1 10 10 C 1.34780 * 120.00021 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99499 * 0.02562 * 10 9 7 12 12 C 1.50693 * 120.00081 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.47407 * 180.02562 * 12 10 9 14 14 C 1.46896 * 111.00574 * 180.02562 * 13 12 10 15 15 H 1.09000 * 109.49905 * 34.92810 * 14 13 12 16 16 C 1.53035 * 109.50182 * 155.00008 * 14 13 12 17 17 C 1.53040 * 109.53944 * 181.31397 * 16 14 13 18 18 C 1.53190 * 109.31532 * 298.63435 * 17 16 14 19 19 N 1.46924 * 108.77423 * 54.63200 * 18 17 16 20 20 C 1.34778 * 120.63099 * 126.36695 * 19 18 17 21 21 O 1.21571 * 120.00466 * 187.85720 * 20 19 18 22 22 C 1.47751 * 119.99904 * 7.86037 * 20 19 18 23 23 C 1.39349 * 124.11803 * 187.63466 * 22 20 19 24 24 N 1.30089 * 112.14494 * 179.73526 * 23 22 20 25 25 S 1.55926 * 108.75667 * 359.97438 * 24 23 22 26 26 N 1.31497 * 124.11686 * 7.33682 * 22 20 19 27 27 C 1.46930 * 118.74317 * 306.64601 * 19 18 17 28 28 H 0.96999 * 119.99580 * 359.97438 * 1 2 3 29 29 H 0.97004 * 120.00581 * 0.02562 * 9 7 2 30 30 H 1.09002 * 109.47287 * 59.99824 * 12 10 9 31 31 H 1.09009 * 109.47307 * 299.99855 * 12 10 9 32 32 H 1.00903 * 110.99372 * 303.95589 * 13 12 10 33 33 H 1.08997 * 109.45823 * 61.29255 * 16 14 13 34 34 H 1.09005 * 109.44787 * 301.33121 * 16 14 13 35 35 H 1.09002 * 109.49602 * 178.68008 * 17 16 14 36 36 H 1.08998 * 109.49520 * 58.58766 * 17 16 14 37 37 H 1.09000 * 109.58461 * 294.84751 * 18 17 16 38 38 H 1.08997 * 109.70175 * 174.49149 * 18 17 16 39 39 H 1.08001 * 123.92699 * 359.73408 * 23 22 20 40 40 H 1.09002 * 109.58876 * 173.14248 * 27 19 18 41 41 H 1.08999 * 109.58235 * 293.57342 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2832 2.7465 0.0006 6 1 3.1020 1.6963 1.2124 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2102 -3.5579 -0.0001 12 6 1.2437 -4.8629 -0.0011 13 7 2.1982 -5.9796 -0.0004 14 6 1.4980 -7.2709 -0.0015 15 1 0.5847 -7.1889 -0.5908 16 6 2.4044 -8.3430 -0.6105 17 6 1.6637 -9.6819 -0.6422 18 6 1.3132 -10.1010 0.7890 19 7 0.5642 -9.0120 1.4307 20 6 -0.6338 -9.2461 2.0022 21 8 -1.3084 -8.3173 2.4024 22 6 -1.1272 -10.6318 2.1423 23 6 -2.4087 -10.9649 2.5765 24 7 -2.5968 -12.2518 2.6077 25 16 -1.2904 -12.9610 2.1370 26 7 -0.4123 -11.7006 1.8673 27 6 1.1430 -7.6615 1.4321 28 1 -0.4849 0.8401 0.0004 29 1 0.3533 -2.3907 -0.0005 30 1 0.6173 -4.9205 -0.8913 31 1 0.6167 -4.9209 0.8887 32 1 2.8337 -5.9125 -0.7813 33 1 3.3066 -8.4414 -0.0069 34 1 2.6765 -8.0544 -1.6258 35 1 2.3013 -10.4397 -1.0974 36 1 0.7486 -9.5776 -1.2252 37 1 2.2289 -10.2935 1.3480 38 1 0.7012 -11.0027 0.7684 39 1 -3.1586 -10.2392 2.8547 40 1 0.4178 -6.9535 1.8334 41 1 2.0446 -7.6511 2.0445 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207505653.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:48 Heat of formation + Delta-G solvation = -17.289604 kcal Electronic energy + Delta-G solvation = -26499.865855 eV Core-core repulsion = 22541.418863 eV Total energy + Delta-G solvation = -3958.446992 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.40009 -40.76076 -40.10333 -38.77012 -36.50914 -35.83413 -34.68985 -33.41381 -33.21067 -31.12256 -28.91964 -27.90352 -26.55639 -25.81859 -23.88920 -23.28273 -21.76036 -21.07314 -20.59211 -20.34030 -19.89760 -18.29745 -17.79622 -17.42396 -17.20241 -16.85792 -16.62094 -16.23565 -16.03515 -15.91042 -15.60712 -15.36337 -15.14246 -14.96404 -14.32528 -14.16732 -13.94186 -13.63879 -13.49914 -13.31940 -13.20784 -12.90755 -12.67383 -12.46773 -12.43716 -12.35281 -12.24506 -12.12539 -11.96144 -11.52460 -11.50454 -11.45985 -10.81385 -10.37286 -10.27161 -10.03178 -9.81663 -9.40108 -8.46898 -5.96274 -0.71645 0.31073 0.42252 0.61348 1.39784 1.41451 1.52903 1.76236 1.92133 2.02947 2.28818 2.87335 3.19759 3.23276 3.45788 3.47700 3.76471 3.89911 3.97393 4.08056 4.16158 4.25779 4.30166 4.41142 4.46894 4.51107 4.58929 4.62899 4.79601 4.91509 5.00595 5.03320 5.13924 5.27786 5.32536 5.40157 5.43713 5.86674 6.05834 6.21515 6.36243 6.58251 6.85257 7.10983 7.54246 8.08760 8.70375 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024041 B = 0.002081 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.412843 B =13449.457159 C =14383.084308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.015 4.015 3 Si 0.996 3.004 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.335 4.335 8 H 0.081 0.919 9 N -0.573 5.573 10 C 0.440 3.560 11 O -0.620 6.620 12 C 0.065 3.935 13 N -0.670 5.670 14 C 0.081 3.919 15 H 0.044 0.956 16 C -0.119 4.119 17 C -0.123 4.123 18 C 0.081 3.919 19 N -0.587 5.587 20 C 0.596 3.404 21 O -0.560 6.560 22 C -0.001 4.001 23 C 0.088 3.912 24 N -0.597 5.597 25 S 0.793 5.207 26 N -0.548 5.548 27 C 0.125 3.875 28 H 0.278 0.722 29 H 0.395 0.605 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.353 0.647 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.140 0.860 39 H 0.219 0.781 40 H 0.071 0.929 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.605 -30.955 0.580 31.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.215 4.215 3 Si 0.819 3.181 4 H -0.195 1.195 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.464 4.464 8 H 0.099 0.901 9 N -0.210 5.210 10 C 0.227 3.773 11 O -0.506 6.506 12 C -0.068 4.068 13 N -0.304 5.304 14 C -0.029 4.029 15 H 0.062 0.938 16 C -0.157 4.157 17 C -0.162 4.162 18 C -0.043 4.043 19 N -0.319 5.319 20 C 0.380 3.620 21 O -0.438 6.438 22 C -0.173 4.173 23 C -0.103 4.103 24 N -0.440 5.440 25 S 0.837 5.163 26 N -0.400 5.400 27 C 0.001 3.999 28 H 0.087 0.913 29 H 0.229 0.771 30 H 0.082 0.918 31 H 0.113 0.887 32 H 0.173 0.827 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.125 0.875 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.156 0.844 39 H 0.235 0.765 40 H 0.089 0.911 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.830 -32.353 1.294 32.502 hybrid contribution -0.940 3.078 -0.557 3.266 sum -3.770 -29.275 0.737 29.526 Atomic orbital electron populations 1.69681 1.06936 1.29412 1.50191 1.26103 0.96570 1.02589 0.96217 0.84954 0.77719 0.76422 0.79030 1.19468 1.19540 1.19691 1.19657 0.92769 0.83928 1.50046 0.90082 1.41951 1.09333 1.04812 1.64945 1.20742 0.88226 0.85975 0.82339 1.90483 1.15583 1.87907 1.56664 1.21574 0.94066 0.88515 1.02633 1.59919 1.18716 0.99961 1.51805 1.21734 0.96553 0.89111 0.95550 0.93789 1.21728 0.98482 0.93983 1.01468 1.21901 1.01000 0.97032 0.96236 1.22872 0.98089 0.90480 0.92818 1.47959 1.18476 1.10696 1.54758 1.17170 0.81038 0.85650 0.78185 1.90838 1.56960 1.44321 1.51703 1.22093 0.93489 0.93480 1.08208 1.23790 0.96725 0.91511 0.98274 1.72155 1.34261 1.12525 1.25051 1.78912 0.86945 1.13922 1.36559 1.72521 1.37576 1.06685 1.23256 1.21471 0.98658 0.82362 0.97367 0.91275 0.77089 0.91759 0.88713 0.82655 0.90420 0.90692 0.87502 0.91994 0.90268 0.84357 0.76484 0.91063 0.90200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.97 13.05 21.67 0.28 -50.69 16 2 C -0.02 -0.82 5.50 84.93 0.47 -0.36 16 3 Si 1.00 43.61 29.55 68.60 2.03 45.64 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 7 C -0.33 -19.37 9.68 84.04 0.81 -18.56 16 8 H 0.08 4.95 7.16 -2.91 -0.02 4.93 16 9 N -0.57 -30.35 5.29 -306.98 -1.62 -31.98 16 10 C 0.44 21.49 7.82 87.65 0.69 22.17 16 11 O -0.62 -34.66 15.78 -3.07 -0.05 -34.71 16 12 C 0.06 2.34 5.97 85.55 0.51 2.85 16 13 N -0.67 -21.25 5.94 -495.92 -2.94 -24.19 16 14 C 0.08 1.98 2.63 44.85 0.12 2.09 16 15 H 0.04 1.12 7.80 -2.39 -0.02 1.10 16 16 C -0.12 -2.11 5.17 30.62 0.16 -1.95 16 17 C -0.12 -1.63 6.08 30.67 0.19 -1.45 16 18 C 0.08 1.22 6.03 86.36 0.52 1.75 16 19 N -0.59 -12.88 2.98 -823.23 -2.45 -15.33 16 20 C 0.60 14.53 7.67 86.76 0.67 15.19 16 21 O -0.56 -17.56 16.24 -3.94 -0.06 -17.63 16 22 C 0.00 -0.02 6.57 41.98 0.28 0.26 16 23 C 0.09 1.43 11.23 85.22 0.96 2.39 16 24 N -0.60 -8.63 11.41 -92.44 -1.05 -9.69 16 25 S 0.79 6.78 23.69 -56.49 -1.34 5.44 16 26 N -0.55 -7.43 7.72 -80.57 -0.62 -8.05 16 27 C 0.12 3.21 5.88 86.22 0.51 3.72 16 28 H 0.28 14.40 8.31 -92.71 -0.77 13.63 16 29 H 0.40 20.10 7.90 -92.71 -0.73 19.37 16 30 H 0.06 2.09 8.06 -2.39 -0.02 2.07 16 31 H 0.09 3.33 7.56 -2.38 -0.02 3.31 16 32 H 0.35 11.32 8.03 -89.69 -0.72 10.60 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.07 1.26 8.10 -2.38 -0.02 1.24 16 35 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.14 1.88 4.13 -32.62 -0.13 1.75 16 39 H 0.22 3.15 8.06 -2.91 -0.02 3.13 16 40 H 0.07 2.19 6.47 -2.39 -0.02 2.17 16 41 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -73.46 355.48 -2.44 -75.90 By element: Atomic # 1 Polarization: 37.64 SS G_CDS: -0.47 Total: 37.17 kcal Atomic # 6 Polarization: 22.24 SS G_CDS: 5.87 Total: 28.11 kcal Atomic # 7 Polarization: -131.51 SS G_CDS: -8.41 Total: -139.92 kcal Atomic # 8 Polarization: -52.22 SS G_CDS: -0.11 Total: -52.33 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: 6.78 SS G_CDS: -1.34 Total: 5.44 kcal Total: -73.46 -2.44 -75.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207505653.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.608 kcal (2) G-P(sol) polarization free energy of solvation -73.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds