Wall clock time and date at job start Tue Mar 31 2020 22:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86794 * 119.99898 * 2 1 4 4 H 1.48498 * 109.47284 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47302 * 300.00171 * 3 2 1 6 6 H 1.48494 * 109.47086 * 60.00189 * 3 2 1 7 7 C 1.38952 * 119.99825 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99604 * 179.97438 * 7 2 1 9 9 N 1.37098 * 120.00288 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99954 * 180.02562 * 9 7 2 11 11 O 1.21288 * 119.99823 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99785 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47020 * 179.97438 * 12 10 9 14 14 C 1.46903 * 111.00165 * 179.97438 * 13 12 10 15 15 H 1.09002 * 109.49512 * 324.99764 * 14 13 12 16 16 C 1.53035 * 109.52539 * 204.91966 * 14 13 12 17 17 C 1.53038 * 109.53832 * 178.66805 * 16 14 13 18 18 C 1.53190 * 109.31514 * 61.36317 * 17 16 14 19 19 N 1.46928 * 108.77302 * 305.36646 * 18 17 16 20 20 C 1.34777 * 120.62865 * 233.58706 * 19 18 17 21 21 O 1.21622 * 120.00099 * 173.52999 * 20 19 18 22 22 C 1.47173 * 119.99830 * 353.53160 * 20 19 18 23 23 C 1.38254 * 128.47425 * 156.32520 * 22 20 19 24 24 N 1.31241 * 111.88323 * 179.80768 * 23 22 20 25 25 N 1.27323 * 120.04310 * 0.53317 * 24 23 22 26 26 S 1.56642 * 109.74176 * 359.69098 * 25 24 23 27 27 C 1.46920 * 118.73919 * 53.60666 * 19 18 17 28 28 H 0.97001 * 120.00390 * 359.97438 * 1 2 3 29 29 H 0.97001 * 119.99889 * 0.02562 * 9 7 2 30 30 H 1.08995 * 109.47796 * 59.99417 * 12 10 9 31 31 H 1.09008 * 109.46883 * 299.99469 * 12 10 9 32 32 H 1.00901 * 111.00265 * 303.95091 * 13 12 10 33 33 H 1.09005 * 109.45757 * 298.68578 * 16 14 13 34 34 H 1.09000 * 109.46210 * 58.64220 * 16 14 13 35 35 H 1.08998 * 109.49746 * 301.40833 * 17 16 14 36 36 H 1.09005 * 109.49954 * 181.31867 * 17 16 14 37 37 H 1.09005 * 109.58495 * 185.57802 * 18 17 16 38 38 H 1.09004 * 109.58602 * 65.15381 * 18 17 16 39 39 H 1.07994 * 124.05181 * 359.96964 * 23 22 20 40 40 H 1.08999 * 109.58458 * 186.59961 * 27 19 18 41 41 H 1.09000 * 109.70232 * 66.25185 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.7080 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2101 -3.5578 -0.0010 12 6 1.2438 -4.8630 -0.0011 13 7 2.1984 -5.9795 -0.0016 14 6 1.4981 -7.2709 -0.0016 15 1 0.5850 -7.1895 0.5881 16 6 2.4044 -8.3441 0.6057 17 6 1.6630 -9.6826 0.6363 18 6 1.3114 -10.1000 -0.7951 19 7 0.5625 -9.0098 -1.4350 20 6 -0.6355 -9.2430 -2.0068 21 8 -1.2990 -8.3151 -2.4286 22 6 -1.1407 -10.6206 -2.1208 23 6 -2.4495 -11.0496 -2.2410 24 7 -2.5302 -12.3569 -2.3240 25 7 -1.4729 -13.0649 -2.2788 26 16 -0.2202 -12.1363 -2.1300 27 6 1.1446 -7.6609 -1.4402 28 1 -0.4851 0.8400 0.0004 29 1 0.3533 -2.3907 -0.0005 30 1 0.6174 -4.9206 -0.8912 31 1 0.6168 -4.9209 0.8887 32 1 2.8332 -5.9121 -0.7830 33 1 3.3062 -8.4423 0.0013 34 1 2.6775 -8.0569 1.6210 35 1 0.7484 -9.5786 1.2200 36 1 2.3005 -10.4413 1.0903 37 1 0.6981 -11.0008 -0.7728 38 1 2.2267 -10.2924 -1.3549 39 1 -3.3028 -10.3881 -2.2664 40 1 0.4212 -6.9524 -1.8437 41 1 2.0458 -7.6519 -2.0532 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207507367.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:25 Heat of formation + Delta-G solvation = 16.185256 kcal Electronic energy + Delta-G solvation = -26406.625610 eV Core-core repulsion = 22449.630197 eV Total energy + Delta-G solvation = -3956.995413 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.31624 -40.54937 -38.53314 -37.78506 -35.36553 -33.89784 -32.83534 -32.55691 -31.25453 -30.17465 -28.19802 -26.37859 -25.82490 -24.27389 -23.10372 -22.70593 -21.01085 -20.09502 -19.55467 -19.18073 -17.90590 -17.67686 -16.90611 -16.53929 -16.06083 -15.81236 -15.31391 -15.07981 -14.87681 -14.65060 -14.52508 -14.20762 -13.98917 -13.76599 -13.43768 -13.32171 -13.10641 -12.93951 -12.48981 -12.30144 -11.75764 -11.67660 -11.61060 -11.43865 -11.21644 -11.07747 -10.88735 -10.69743 -10.60651 -10.47416 -10.35116 -10.23487 -10.02061 -9.53491 -9.29300 -8.50703 -8.12734 -7.97636 -6.42652 -3.83678 -0.74503 0.26186 0.98399 1.52880 2.26129 2.49255 3.15723 3.26474 3.33481 3.51680 3.83752 3.88647 3.97263 4.18873 4.24216 4.37177 4.46408 4.59146 4.64109 4.84431 5.02553 5.09573 5.11672 5.19376 5.26802 5.33915 5.43742 5.51244 5.63669 5.74026 5.89372 5.94088 5.97960 6.07942 6.25002 6.73016 7.09294 7.17521 7.49415 7.54209 7.54514 8.04884 8.59404 9.16560 9.52821 10.03622 10.75030 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024316 B = 0.002111 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.205277 B =13260.596562 C =14135.737653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.584 6.584 12 C 0.047 3.953 13 N -0.655 5.655 14 C 0.075 3.925 15 H 0.083 0.917 16 C -0.109 4.109 17 C -0.132 4.132 18 C 0.098 3.902 19 N -0.598 5.598 20 C 0.599 3.401 21 O -0.510 6.510 22 C -0.288 4.288 23 C 0.073 3.927 24 N -0.250 5.250 25 N -0.271 5.271 26 S 0.435 5.565 27 C 0.082 3.918 28 H 0.271 0.729 29 H 0.393 0.607 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.351 0.649 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.216 0.784 40 H 0.098 0.902 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.977 -25.591 -2.165 25.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.122 0.878 9 N -0.199 5.199 10 C 0.226 3.774 11 O -0.469 6.469 12 C -0.085 4.085 13 N -0.286 5.286 14 C -0.037 4.037 15 H 0.101 0.899 16 C -0.147 4.147 17 C -0.171 4.171 18 C -0.027 4.027 19 N -0.332 5.332 20 C 0.384 3.616 21 O -0.385 6.385 22 C -0.429 4.429 23 C -0.093 4.093 24 N -0.114 5.114 25 N -0.251 5.251 26 S 0.571 5.429 27 C -0.041 4.041 28 H 0.081 0.919 29 H 0.226 0.774 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.171 0.829 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.232 0.768 40 H 0.116 0.884 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.009 -26.786 -1.794 26.846 hybrid contribution -1.390 2.106 -0.912 2.683 sum -1.399 -24.680 -2.706 24.867 Atomic orbital electron populations 1.69620 1.05950 1.28109 1.50484 1.25279 0.95643 0.99775 0.97301 0.85796 0.79694 0.81112 0.77715 1.19207 1.20761 1.20734 1.19749 0.93389 0.82186 1.47561 0.87837 1.41877 1.09258 1.04630 1.64142 1.19756 0.88350 0.84679 0.84641 1.90522 1.13708 1.87057 1.55586 1.21763 0.94367 0.90925 1.01467 1.60243 1.18196 0.99191 1.50991 1.21985 0.97534 0.90289 0.93848 0.89860 1.21520 0.98038 0.92229 1.02893 1.21924 1.01701 0.98607 0.94830 1.22182 0.96733 0.88511 0.95262 1.47883 1.18749 1.10775 1.55837 1.16569 0.81142 0.85271 0.78623 1.90895 1.56196 1.43053 1.48401 1.28027 0.98232 1.00714 1.15918 1.24505 0.97293 0.90803 0.96703 1.70782 1.20060 1.05198 1.15368 1.78771 0.99741 1.27565 1.19030 1.82786 1.19425 0.91151 1.49585 1.22718 0.99483 0.82390 0.99542 0.91880 0.77417 0.93545 0.89467 0.82865 0.91268 0.90048 0.91101 0.89696 0.91138 0.89588 0.76762 0.88380 0.90462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.52 13.05 55.50 0.72 -23.80 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 20.98 29.55 -169.99 -5.02 15.95 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 9 N -0.56 -14.15 5.29 -10.96 -0.06 -14.21 16 10 C 0.44 10.17 7.82 -10.99 -0.09 10.08 16 11 O -0.58 -15.48 15.78 5.55 0.09 -15.40 16 12 C 0.05 0.80 5.97 -4.98 -0.03 0.77 16 13 N -0.65 -9.52 5.88 -107.87 -0.63 -10.15 16 14 C 0.08 0.80 2.62 -67.60 -0.18 0.62 16 15 H 0.08 0.95 7.80 -51.93 -0.41 0.55 16 16 C -0.11 -0.90 5.49 -26.69 -0.15 -1.05 16 17 C -0.13 -0.76 6.08 -26.61 -0.16 -0.93 16 18 C 0.10 0.55 5.71 -3.71 -0.02 0.53 16 19 N -0.60 -5.27 2.97 -174.14 -0.52 -5.78 16 20 C 0.60 6.33 7.66 -12.63 -0.10 6.23 16 21 O -0.51 -7.27 16.46 5.26 0.09 -7.18 16 22 C -0.29 -2.45 6.21 -35.95 -0.22 -2.67 16 23 C 0.07 0.63 11.62 -17.80 -0.21 0.42 16 24 N -0.25 -2.48 11.54 30.36 0.35 -2.13 16 25 N -0.27 -2.52 12.51 60.35 0.75 -1.77 16 26 S 0.43 2.73 19.87 -107.50 -2.14 0.60 16 27 C 0.08 0.83 5.70 -3.72 -0.02 0.81 16 28 H 0.27 6.97 8.31 -40.82 -0.34 6.64 16 29 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 30 H 0.05 0.73 7.56 -51.93 -0.39 0.33 16 31 H 0.09 1.38 8.06 -51.92 -0.42 0.97 16 32 H 0.35 5.21 8.11 -39.29 -0.32 4.89 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.33 3.69 -24.33 -0.09 0.25 16 38 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.22 1.41 8.06 -52.49 -0.42 0.99 16 40 H 0.10 1.21 6.47 -51.93 -0.34 0.87 16 41 H 0.08 0.70 8.04 -51.93 -0.42 0.29 16 LS Contribution 356.14 15.07 5.37 5.37 Total: -1.00 -33.92 356.14 -7.16 -41.08 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -4.75 Total: 10.56 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -1.41 Total: 6.87 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: 0.62 Total: -57.84 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: 0.17 Total: -22.57 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -2.14 Total: 0.60 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.92 -7.16 -41.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207507367.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.261 kcal (2) G-P(sol) polarization free energy of solvation -33.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds