Wall clock time and date at job start Tue Mar 31 2020 22:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86794 * 119.99898 * 2 1 4 4 H 1.48498 * 109.47284 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47302 * 300.00171 * 3 2 1 6 6 H 1.48494 * 109.47086 * 60.00189 * 3 2 1 7 7 C 1.38952 * 119.99825 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99604 * 179.97438 * 7 2 1 9 9 N 1.37098 * 120.00288 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99954 * 180.02562 * 9 7 2 11 11 O 1.21288 * 119.99823 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99785 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47020 * 179.97438 * 12 10 9 14 14 C 1.46903 * 111.00165 * 179.97438 * 13 12 10 15 15 H 1.09002 * 109.49512 * 324.99764 * 14 13 12 16 16 C 1.53035 * 109.52539 * 204.91966 * 14 13 12 17 17 C 1.53038 * 109.53832 * 178.66805 * 16 14 13 18 18 C 1.53190 * 109.31514 * 61.36317 * 17 16 14 19 19 N 1.46928 * 108.77302 * 305.36646 * 18 17 16 20 20 C 1.34777 * 120.62865 * 233.58706 * 19 18 17 21 21 O 1.21622 * 120.00099 * 173.52999 * 20 19 18 22 22 C 1.47173 * 119.99830 * 353.53160 * 20 19 18 23 23 C 1.38254 * 128.47425 * 156.32520 * 22 20 19 24 24 N 1.31241 * 111.88323 * 179.80768 * 23 22 20 25 25 N 1.27323 * 120.04310 * 0.53317 * 24 23 22 26 26 S 1.56642 * 109.74176 * 359.69098 * 25 24 23 27 27 C 1.46920 * 118.73919 * 53.60666 * 19 18 17 28 28 H 0.97001 * 120.00390 * 359.97438 * 1 2 3 29 29 H 0.97001 * 119.99889 * 0.02562 * 9 7 2 30 30 H 1.08995 * 109.47796 * 59.99417 * 12 10 9 31 31 H 1.09008 * 109.46883 * 299.99469 * 12 10 9 32 32 H 1.00901 * 111.00265 * 303.95091 * 13 12 10 33 33 H 1.09005 * 109.45757 * 298.68578 * 16 14 13 34 34 H 1.09000 * 109.46210 * 58.64220 * 16 14 13 35 35 H 1.08998 * 109.49746 * 301.40833 * 17 16 14 36 36 H 1.09005 * 109.49954 * 181.31867 * 17 16 14 37 37 H 1.09005 * 109.58495 * 185.57802 * 18 17 16 38 38 H 1.09004 * 109.58602 * 65.15381 * 18 17 16 39 39 H 1.07994 * 124.05181 * 359.96964 * 23 22 20 40 40 H 1.08999 * 109.58458 * 186.59961 * 27 19 18 41 41 H 1.09000 * 109.70232 * 66.25185 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.7080 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2101 -3.5578 -0.0010 12 6 1.2438 -4.8630 -0.0011 13 7 2.1984 -5.9795 -0.0016 14 6 1.4981 -7.2709 -0.0016 15 1 0.5850 -7.1895 0.5881 16 6 2.4044 -8.3441 0.6057 17 6 1.6630 -9.6826 0.6363 18 6 1.3114 -10.1000 -0.7951 19 7 0.5625 -9.0098 -1.4350 20 6 -0.6355 -9.2430 -2.0068 21 8 -1.2990 -8.3151 -2.4286 22 6 -1.1407 -10.6206 -2.1208 23 6 -2.4495 -11.0496 -2.2410 24 7 -2.5302 -12.3569 -2.3240 25 7 -1.4729 -13.0649 -2.2788 26 16 -0.2202 -12.1363 -2.1300 27 6 1.1446 -7.6609 -1.4402 28 1 -0.4851 0.8400 0.0004 29 1 0.3533 -2.3907 -0.0005 30 1 0.6174 -4.9206 -0.8912 31 1 0.6168 -4.9209 0.8887 32 1 2.8332 -5.9121 -0.7830 33 1 3.3062 -8.4423 0.0013 34 1 2.6775 -8.0569 1.6210 35 1 0.7484 -9.5786 1.2200 36 1 2.3005 -10.4413 1.0903 37 1 0.6981 -11.0008 -0.7728 38 1 2.2267 -10.2924 -1.3549 39 1 -3.3028 -10.3881 -2.2664 40 1 0.4212 -6.9524 -1.8437 41 1 2.0458 -7.6519 -2.0532 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207507367.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:25 Heat of formation + Delta-G solvation = -10.861477 kcal Electronic energy + Delta-G solvation = -26407.798444 eV Core-core repulsion = 22449.630197 eV Total energy + Delta-G solvation = -3958.168247 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.99149 -41.30820 -40.17043 -38.85867 -36.49928 -35.80726 -33.64915 -33.24809 -33.19999 -31.15240 -28.96136 -27.86965 -26.51891 -25.88650 -23.88097 -23.47979 -21.83382 -21.13380 -20.66232 -20.15233 -19.87545 -18.39885 -17.84331 -17.65751 -17.09571 -16.89633 -16.48854 -16.18224 -15.99902 -15.90112 -15.48585 -15.45155 -15.19518 -14.89926 -14.41495 -14.26720 -13.94336 -13.83043 -13.77119 -13.48841 -13.21020 -13.08393 -12.85962 -12.42372 -12.39756 -12.20693 -12.10594 -11.93683 -11.63806 -11.51983 -11.48535 -11.23341 -11.15153 -10.61034 -10.36175 -10.07864 -10.01738 -9.29790 -8.47088 -5.96116 -1.38875 -0.33461 0.38422 0.85370 1.36641 1.41945 1.53156 1.56509 1.74829 2.03804 2.28725 2.85432 2.89789 3.20018 3.23154 3.47307 3.61288 3.77046 3.78225 3.88064 3.96778 4.23556 4.29239 4.34159 4.42636 4.52650 4.53785 4.63503 4.68556 4.71607 4.88081 5.06080 5.18697 5.31396 5.39870 5.41490 5.87003 6.01532 6.07576 6.36846 6.55150 6.58485 6.74036 7.11720 7.55139 8.09475 8.70584 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024316 B = 0.002111 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.205277 B =13260.596562 C =14135.737653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.016 4.016 3 Si 0.994 3.006 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.332 4.332 8 H 0.081 0.919 9 N -0.575 5.575 10 C 0.440 3.560 11 O -0.620 6.620 12 C 0.063 3.937 13 N -0.664 5.664 14 C 0.079 3.921 15 H 0.075 0.925 16 C -0.104 4.104 17 C -0.125 4.125 18 C 0.092 3.908 19 N -0.594 5.594 20 C 0.599 3.401 21 O -0.558 6.558 22 C -0.310 4.310 23 C 0.074 3.926 24 N -0.276 5.276 25 N -0.303 5.303 26 S 0.530 5.470 27 C 0.087 3.913 28 H 0.277 0.723 29 H 0.395 0.605 30 H 0.061 0.939 31 H 0.101 0.899 32 H 0.349 0.651 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.115 0.885 37 H 0.081 0.919 38 H 0.115 0.885 39 H 0.225 0.775 40 H 0.072 0.928 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.007 -27.278 -1.923 27.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.215 4.215 3 Si 0.818 3.182 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.461 4.461 8 H 0.099 0.901 9 N -0.212 5.212 10 C 0.227 3.773 11 O -0.506 6.506 12 C -0.069 4.069 13 N -0.295 5.295 14 C -0.032 4.032 15 H 0.093 0.907 16 C -0.143 4.143 17 C -0.163 4.163 18 C -0.031 4.031 19 N -0.326 5.326 20 C 0.385 3.615 21 O -0.437 6.437 22 C -0.451 4.451 23 C -0.094 4.094 24 N -0.139 5.139 25 N -0.284 5.284 26 S 0.666 5.334 27 C -0.037 4.037 28 H 0.087 0.913 29 H 0.229 0.771 30 H 0.079 0.921 31 H 0.119 0.881 32 H 0.169 0.831 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.134 0.866 37 H 0.098 0.902 38 H 0.133 0.867 39 H 0.241 0.759 40 H 0.091 0.909 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.954 -28.533 -1.535 28.590 hybrid contribution -1.585 2.538 -0.964 3.144 sum -0.631 -25.994 -2.499 26.122 Atomic orbital electron populations 1.69686 1.06924 1.29252 1.50418 1.26084 0.96549 1.02568 0.96314 0.84847 0.78097 0.76986 0.78271 1.19574 1.19687 1.19650 1.19717 0.92745 0.83926 1.49747 0.90088 1.41969 1.09341 1.04853 1.64997 1.20788 0.88240 0.86028 0.82244 1.90487 1.15609 1.87923 1.56622 1.21578 0.94138 0.88487 1.02740 1.60280 1.18148 0.99968 1.51117 1.22038 0.97599 0.89153 0.94366 0.90655 1.21497 0.98107 0.92508 1.02151 1.21914 1.01715 0.97822 0.94889 1.22489 0.97559 0.87583 0.95437 1.47945 1.18397 1.11006 1.55263 1.16789 0.81111 0.85551 0.78049 1.90869 1.57588 1.44642 1.50556 1.27876 0.99057 1.00903 1.17272 1.24707 0.97932 0.90662 0.96049 1.70846 1.20722 1.05582 1.16767 1.78508 1.00922 1.29013 1.19933 1.82339 1.16517 0.88199 1.46343 1.22532 0.99303 0.82804 0.99043 0.91325 0.77102 0.92111 0.88130 0.83123 0.90298 0.91000 0.91683 0.86639 0.90209 0.86747 0.75908 0.90913 0.89044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.30 13.05 21.66 0.28 -50.02 16 2 C -0.02 -0.84 5.50 84.93 0.47 -0.37 16 3 Si 0.99 43.04 29.55 68.60 2.03 45.07 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 6 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.33 -18.87 9.68 84.04 0.81 -18.06 16 8 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 9 N -0.57 -29.63 5.29 -306.99 -1.62 -31.25 16 10 C 0.44 20.68 7.82 87.66 0.69 21.37 16 11 O -0.62 -33.60 15.78 -3.05 -0.05 -33.65 16 12 C 0.06 2.13 5.97 85.56 0.51 2.64 16 13 N -0.66 -18.90 5.88 -495.19 -2.91 -21.81 16 14 C 0.08 1.59 2.62 44.99 0.12 1.71 16 15 H 0.08 1.65 7.80 -2.39 -0.02 1.63 16 16 C -0.10 -1.47 5.49 30.62 0.17 -1.30 16 17 C -0.12 -1.01 6.08 30.67 0.19 -0.82 16 18 C 0.09 0.72 5.71 86.36 0.49 1.21 16 19 N -0.59 -9.36 2.97 -823.09 -2.45 -11.81 16 20 C 0.60 12.18 7.66 86.59 0.66 12.84 16 21 O -0.56 -16.20 16.46 -4.10 -0.07 -16.27 16 22 C -0.31 -4.85 6.21 24.62 0.15 -4.70 16 23 C 0.07 1.22 11.62 84.78 0.99 2.21 16 24 N -0.28 -5.27 11.54 -57.87 -0.67 -5.94 16 25 N -0.30 -5.14 12.51 37.02 0.46 -4.68 16 26 S 0.53 5.20 19.87 -56.49 -1.12 4.08 16 27 C 0.09 1.67 5.70 86.36 0.49 2.16 16 28 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 29 H 0.40 19.58 7.90 -92.71 -0.73 18.85 16 30 H 0.06 1.90 7.56 -2.39 -0.02 1.88 16 31 H 0.10 3.15 8.06 -2.38 -0.02 3.13 16 32 H 0.35 10.19 8.11 -89.69 -0.73 9.46 16 33 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.12 0.34 8.14 -2.38 -0.02 0.32 16 37 H 0.08 0.45 3.69 -19.93 -0.07 0.38 16 38 H 0.11 0.35 8.14 -2.38 -0.02 0.33 16 39 H 0.22 2.98 8.06 -2.91 -0.02 2.96 16 40 H 0.07 1.80 6.47 -2.39 -0.02 1.79 16 41 H 0.09 1.50 8.04 -2.39 -0.02 1.48 16 Total: -1.00 -75.58 356.14 -0.79 -76.37 By element: Atomic # 1 Polarization: 31.45 SS G_CDS: -0.42 Total: 31.03 kcal Atomic # 6 Polarization: 13.15 SS G_CDS: 5.74 Total: 18.89 kcal Atomic # 7 Polarization: -118.61 SS G_CDS: -6.90 Total: -125.51 kcal Atomic # 8 Polarization: -49.81 SS G_CDS: -0.12 Total: -49.92 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: 5.20 SS G_CDS: -1.12 Total: 4.08 kcal Total: -75.58 -0.79 -76.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207507367.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.507 kcal (2) G-P(sol) polarization free energy of solvation -75.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds