Wall clock time and date at job start Tue Mar 31 2020 22:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86799 * 119.99732 * 2 1 4 4 H 1.48496 * 109.46991 * 269.99521 * 3 2 1 5 5 H 1.48499 * 109.47456 * 29.99870 * 3 2 1 6 6 H 1.48503 * 109.46781 * 149.99987 * 3 2 1 7 7 C 1.38948 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99540 * 0.02562 * 7 2 1 9 9 N 1.37092 * 120.00443 * 180.02562 * 7 2 1 10 10 C 1.34773 * 120.00680 * 179.97438 * 9 7 2 11 11 O 1.21299 * 119.99593 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00219 * 180.02562 * 10 9 7 13 13 N 1.46906 * 109.46876 * 180.02562 * 12 10 9 14 14 C 1.46903 * 110.99911 * 180.02562 * 13 12 10 15 15 H 1.08997 * 109.52072 * 35.07919 * 14 13 12 16 16 C 1.53037 * 109.49879 * 155.16004 * 14 13 12 17 17 C 1.53040 * 109.53956 * 181.31687 * 16 14 13 18 18 C 1.53622 * 109.23726 * 298.50975 * 17 16 14 19 19 N 1.46924 * 108.54561 * 54.85770 * 18 17 16 20 20 C 1.34781 * 120.63285 * 126.36285 * 19 18 17 21 21 O 1.21622 * 119.99828 * 186.17077 * 20 19 18 22 22 C 1.47173 * 119.99766 * 5.89754 * 20 19 18 23 23 C 1.38240 * 128.47430 * 203.74917 * 22 20 19 24 24 N 1.31239 * 111.88745 * 179.80954 * 23 22 20 25 25 N 1.27331 * 120.03934 * 0.53808 * 24 23 22 26 26 S 1.56641 * 109.74129 * 359.68994 * 25 24 23 27 27 C 1.46922 * 118.73877 * 306.09293 * 19 18 17 28 28 H 0.97000 * 120.00014 * 0.02562 * 1 2 3 29 29 H 0.97011 * 119.99563 * 0.02562 * 9 7 2 30 30 H 1.08993 * 109.47083 * 60.00654 * 12 10 9 31 31 H 1.08998 * 109.47235 * 299.99910 * 12 10 9 32 32 H 1.00908 * 110.99891 * 303.95150 * 13 12 10 33 33 H 1.09001 * 109.46043 * 301.33509 * 16 14 13 34 34 H 1.08999 * 109.46022 * 61.30850 * 16 14 13 35 35 H 1.08996 * 109.49728 * 58.58189 * 17 16 14 36 36 H 1.08999 * 109.49616 * 178.64968 * 17 16 14 37 37 H 1.08999 * 109.74415 * 295.12037 * 18 17 16 38 38 H 1.09007 * 109.66110 * 174.54630 * 18 17 16 39 39 H 1.08003 * 124.05646 * 0.02562 * 23 22 20 40 40 H 1.08997 * 109.58900 * 173.64459 * 27 19 18 41 41 H 1.09002 * 109.58745 * 293.92804 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0090 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3799 -1.2034 0.0011 10 6 4.0538 -2.3705 0.0021 11 8 3.4473 -3.4210 0.0021 12 6 5.5608 -2.3704 0.0033 13 7 6.0505 -3.7555 0.0037 14 6 7.5190 -3.7947 0.0054 15 1 7.9048 -2.9640 0.5964 16 6 7.9940 -5.1170 0.6118 17 6 9.5238 -5.1450 0.6442 18 6 10.0623 -5.0508 -0.7914 19 7 9.4944 -3.8535 -1.4259 20 6 10.2964 -2.9324 -1.9959 21 8 9.8253 -1.8935 -2.4178 22 6 11.7430 -3.1811 -2.1023 23 6 12.7678 -2.2606 -2.2182 24 7 13.9424 -2.8421 -2.2865 25 7 14.0278 -4.1121 -2.2535 26 16 12.5968 -4.7353 -2.1211 27 6 8.0352 -3.6823 -1.4325 28 1 -0.4850 0.8400 -0.0004 29 1 3.8649 -0.3632 0.0014 30 1 5.9234 -1.8563 0.8933 31 1 5.9248 -1.8570 -0.8866 32 1 5.6744 -4.2718 0.7848 33 1 7.6075 -5.2107 1.6267 34 1 7.6286 -5.9463 0.0061 35 1 9.8908 -4.3017 1.2291 36 1 9.8610 -6.0769 1.0981 37 1 9.7680 -5.9368 -1.3540 38 1 11.1494 -4.9727 -0.7710 39 1 12.6199 -1.1911 -2.2454 40 1 7.7842 -2.7010 -1.8352 41 1 7.5791 -4.4575 -2.0483 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207507368.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:29 Heat of formation + Delta-G solvation = 23.822455 kcal Electronic energy + Delta-G solvation = -26471.263585 eV Core-core repulsion = 22514.599346 eV Total energy + Delta-G solvation = -3956.664239 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.33270 -40.54559 -38.66063 -37.88051 -35.42872 -33.95164 -32.85050 -32.59107 -31.67696 -30.30111 -28.25798 -26.60540 -25.89081 -24.17007 -23.22073 -22.53721 -20.99397 -20.06736 -19.50348 -19.35601 -18.34347 -17.67677 -16.90053 -16.55304 -16.09860 -15.85278 -15.32889 -15.26405 -15.01038 -14.85408 -14.66284 -14.23898 -14.09621 -13.63798 -13.32223 -13.18853 -13.13038 -12.91843 -12.53187 -12.50641 -12.21174 -12.11487 -11.66643 -11.61778 -11.37949 -11.16370 -10.76126 -10.70711 -10.61437 -10.59566 -10.49232 -10.05709 -9.98546 -9.58513 -9.22458 -8.63133 -8.28865 -8.18871 -6.32288 -3.83841 -0.76271 0.24313 0.96448 1.50926 2.24868 2.48917 3.02698 3.07790 3.15561 3.49773 3.71053 3.82071 3.90542 4.09773 4.21493 4.27290 4.35479 4.45804 4.64759 4.80474 4.86745 5.01990 5.08378 5.13331 5.20219 5.30349 5.42703 5.49901 5.58404 5.61601 5.72719 5.80003 5.86625 5.92323 5.98463 6.73579 6.97897 7.15480 7.44903 7.50210 7.56540 8.12738 8.57956 8.93389 9.41015 9.80423 10.80652 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020293 B = 0.002303 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.448264 B =12153.543565 C =13227.602391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.042 3.958 3 Si 0.879 3.121 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.589 5.589 10 C 0.450 3.550 11 O -0.565 6.565 12 C 0.046 3.954 13 N -0.661 5.661 14 C 0.074 3.926 15 H 0.049 0.951 16 C -0.124 4.124 17 C -0.129 4.129 18 C 0.098 3.902 19 N -0.602 5.602 20 C 0.600 3.400 21 O -0.510 6.510 22 C -0.288 4.288 23 C 0.073 3.927 24 N -0.250 5.250 25 N -0.271 5.271 26 S 0.435 5.565 27 C 0.123 3.877 28 H 0.274 0.726 29 H 0.371 0.629 30 H 0.046 0.954 31 H 0.089 0.911 32 H 0.357 0.643 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.216 0.784 40 H 0.097 0.903 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.470 -9.745 -0.464 29.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.229 5.229 10 C 0.235 3.765 11 O -0.448 6.448 12 C -0.087 4.087 13 N -0.294 5.294 14 C -0.037 4.037 15 H 0.067 0.933 16 C -0.161 4.161 17 C -0.168 4.168 18 C -0.027 4.027 19 N -0.335 5.335 20 C 0.385 3.615 21 O -0.386 6.386 22 C -0.429 4.429 23 C -0.094 4.094 24 N -0.114 5.114 25 N -0.251 5.251 26 S 0.571 5.429 27 C 0.001 3.999 28 H 0.084 0.916 29 H 0.204 0.796 30 H 0.064 0.936 31 H 0.107 0.893 32 H 0.178 0.822 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.089 0.911 39 H 0.232 0.768 40 H 0.116 0.884 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 27.898 -11.262 -1.447 30.120 hybrid contribution 0.020 3.015 0.952 3.162 sum 27.918 -8.247 -0.495 29.115 Atomic orbital electron populations 1.69624 1.05640 1.27530 1.49248 1.25045 0.95505 0.98010 0.97591 0.86674 0.79729 0.84000 0.79008 1.19513 1.20182 1.19522 1.19424 0.79207 0.96629 1.48134 0.86254 1.42212 1.07570 1.06198 1.66892 1.19652 0.88076 0.84587 0.84138 1.90566 1.69398 1.30900 1.53890 1.21802 0.95199 0.90189 1.01490 1.59940 1.04648 1.13049 1.51806 1.21811 0.88958 0.97445 0.95491 0.93329 1.21734 0.94590 0.97890 1.01931 1.21955 0.96335 1.03328 0.95166 1.22252 0.97225 0.88233 0.95006 1.47934 1.07736 1.21863 1.56016 1.16531 0.82698 0.83595 0.78685 1.90890 1.74496 1.24835 1.48341 1.28037 1.00670 0.98309 1.15873 1.24493 0.84687 1.03396 0.96796 1.70787 1.24544 1.00727 1.15368 1.78774 1.20986 1.06256 1.19109 1.82790 0.97137 1.13364 1.49609 1.21771 0.75874 1.04845 0.97427 0.91592 0.79646 0.93589 0.89332 0.82237 0.90923 0.90106 0.91174 0.89653 0.89354 0.91129 0.76796 0.88419 0.89452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.64 13.96 55.50 0.77 -24.87 16 2 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 3 Si 0.88 19.41 27.74 -169.99 -4.71 14.70 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 7 C -0.31 -8.58 10.16 -14.94 -0.15 -8.73 16 8 H 0.12 3.83 7.39 -52.48 -0.39 3.44 16 9 N -0.59 -13.92 5.09 -10.96 -0.06 -13.98 16 10 C 0.45 9.96 7.82 -10.99 -0.09 9.87 16 11 O -0.57 -14.76 15.78 5.54 0.09 -14.68 16 12 C 0.05 0.73 5.97 -4.97 -0.03 0.70 16 13 N -0.66 -9.12 5.94 -107.87 -0.64 -9.76 16 14 C 0.07 0.75 2.64 -67.59 -0.18 0.57 16 15 H 0.05 0.52 7.80 -51.93 -0.41 0.11 16 16 C -0.12 -0.90 5.17 -26.69 -0.14 -1.03 16 17 C -0.13 -0.66 6.10 -26.39 -0.16 -0.82 16 18 C 0.10 0.52 5.75 -3.49 -0.02 0.50 16 19 N -0.60 -5.15 2.97 -173.87 -0.52 -5.67 16 20 C 0.60 6.13 7.66 -12.63 -0.10 6.04 16 21 O -0.51 -7.05 16.46 5.26 0.09 -6.96 16 22 C -0.29 -2.35 6.20 -35.95 -0.22 -2.57 16 23 C 0.07 0.60 11.62 -17.80 -0.21 0.39 16 24 N -0.25 -2.41 11.54 30.36 0.35 -2.06 16 25 N -0.27 -2.45 12.51 60.35 0.75 -1.70 16 26 S 0.44 2.62 19.89 -107.50 -2.14 0.48 16 27 C 0.12 1.27 5.91 -3.71 -0.02 1.24 16 28 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 29 H 0.37 7.74 5.76 -40.82 -0.24 7.51 16 30 H 0.05 0.65 8.06 -51.93 -0.42 0.23 16 31 H 0.09 1.31 7.56 -51.93 -0.39 0.92 16 32 H 0.36 5.04 8.03 -39.29 -0.32 4.72 16 33 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.31 3.67 -24.33 -0.09 0.22 16 39 H 0.22 1.33 8.06 -52.48 -0.42 0.91 16 40 H 0.10 1.21 6.47 -51.93 -0.34 0.88 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 353.01 15.07 5.32 5.32 Total: -1.00 -35.00 353.01 -6.81 -41.81 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -4.70 Total: 10.18 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: -1.41 Total: 7.19 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: 0.67 Total: -58.03 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: 0.17 Total: -21.64 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.71 Total: 14.70 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -2.14 Total: 0.48 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.00 -6.81 -41.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207507368.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.630 kcal (2) G-P(sol) polarization free energy of solvation -35.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds