Wall clock time and date at job start Tue Mar 31 2020 22:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86799 * 119.99732 * 2 1 4 4 H 1.48496 * 109.46991 * 269.99521 * 3 2 1 5 5 H 1.48499 * 109.47456 * 29.99870 * 3 2 1 6 6 H 1.48503 * 109.46781 * 149.99987 * 3 2 1 7 7 C 1.38948 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99540 * 0.02562 * 7 2 1 9 9 N 1.37092 * 120.00443 * 180.02562 * 7 2 1 10 10 C 1.34773 * 120.00680 * 179.97438 * 9 7 2 11 11 O 1.21299 * 119.99593 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00219 * 180.02562 * 10 9 7 13 13 N 1.46906 * 109.46876 * 180.02562 * 12 10 9 14 14 C 1.46903 * 110.99911 * 180.02562 * 13 12 10 15 15 H 1.08997 * 109.52072 * 35.07919 * 14 13 12 16 16 C 1.53037 * 109.49879 * 155.16004 * 14 13 12 17 17 C 1.53040 * 109.53956 * 181.31687 * 16 14 13 18 18 C 1.53622 * 109.23726 * 298.50975 * 17 16 14 19 19 N 1.46924 * 108.54561 * 54.85770 * 18 17 16 20 20 C 1.34781 * 120.63285 * 126.36285 * 19 18 17 21 21 O 1.21622 * 119.99828 * 186.17077 * 20 19 18 22 22 C 1.47173 * 119.99766 * 5.89754 * 20 19 18 23 23 C 1.38240 * 128.47430 * 203.74917 * 22 20 19 24 24 N 1.31239 * 111.88745 * 179.80954 * 23 22 20 25 25 N 1.27331 * 120.03934 * 0.53808 * 24 23 22 26 26 S 1.56641 * 109.74129 * 359.68994 * 25 24 23 27 27 C 1.46922 * 118.73877 * 306.09293 * 19 18 17 28 28 H 0.97000 * 120.00014 * 0.02562 * 1 2 3 29 29 H 0.97011 * 119.99563 * 0.02562 * 9 7 2 30 30 H 1.08993 * 109.47083 * 60.00654 * 12 10 9 31 31 H 1.08998 * 109.47235 * 299.99910 * 12 10 9 32 32 H 1.00908 * 110.99891 * 303.95150 * 13 12 10 33 33 H 1.09001 * 109.46043 * 301.33509 * 16 14 13 34 34 H 1.08999 * 109.46022 * 61.30850 * 16 14 13 35 35 H 1.08996 * 109.49728 * 58.58189 * 17 16 14 36 36 H 1.08999 * 109.49616 * 178.64968 * 17 16 14 37 37 H 1.08999 * 109.74415 * 295.12037 * 18 17 16 38 38 H 1.09007 * 109.66110 * 174.54630 * 18 17 16 39 39 H 1.08003 * 124.05646 * 0.02562 * 23 22 20 40 40 H 1.08997 * 109.58900 * 173.64459 * 27 19 18 41 41 H 1.09002 * 109.58745 * 293.92804 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0090 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3799 -1.2034 0.0011 10 6 4.0538 -2.3705 0.0021 11 8 3.4473 -3.4210 0.0021 12 6 5.5608 -2.3704 0.0033 13 7 6.0505 -3.7555 0.0037 14 6 7.5190 -3.7947 0.0054 15 1 7.9048 -2.9640 0.5964 16 6 7.9940 -5.1170 0.6118 17 6 9.5238 -5.1450 0.6442 18 6 10.0623 -5.0508 -0.7914 19 7 9.4944 -3.8535 -1.4259 20 6 10.2964 -2.9324 -1.9959 21 8 9.8253 -1.8935 -2.4178 22 6 11.7430 -3.1811 -2.1023 23 6 12.7678 -2.2606 -2.2182 24 7 13.9424 -2.8421 -2.2865 25 7 14.0278 -4.1121 -2.2535 26 16 12.5968 -4.7353 -2.1211 27 6 8.0352 -3.6823 -1.4325 28 1 -0.4850 0.8400 -0.0004 29 1 3.8649 -0.3632 0.0014 30 1 5.9234 -1.8563 0.8933 31 1 5.9248 -1.8570 -0.8866 32 1 5.6744 -4.2718 0.7848 33 1 7.6075 -5.2107 1.6267 34 1 7.6286 -5.9463 0.0061 35 1 9.8908 -4.3017 1.2291 36 1 9.8610 -6.0769 1.0981 37 1 9.7680 -5.9368 -1.3540 38 1 11.1494 -4.9727 -0.7710 39 1 12.6199 -1.1911 -2.2454 40 1 7.7842 -2.7010 -1.8352 41 1 7.5791 -4.4575 -2.0483 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207507368.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:28 Heat of formation + Delta-G solvation = -5.332620 kcal Electronic energy + Delta-G solvation = -26472.527844 eV Core-core repulsion = 22514.599346 eV Total energy + Delta-G solvation = -3957.928498 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.97111 -41.26371 -40.30221 -38.84319 -36.50617 -35.84537 -33.79010 -33.54929 -33.19335 -31.19849 -29.02117 -27.99018 -26.57250 -25.71089 -23.94380 -23.29798 -21.74633 -21.27395 -20.67093 -20.26264 -20.06009 -18.35329 -17.84925 -17.59210 -17.08397 -16.92161 -16.74945 -16.11702 -16.08559 -15.83025 -15.54807 -15.33297 -15.08427 -14.99405 -14.44608 -14.29416 -14.13606 -13.93775 -13.76290 -13.64040 -13.30685 -13.06868 -12.96867 -12.51209 -12.42037 -12.26744 -11.98822 -11.96731 -11.53054 -11.50425 -11.41944 -11.21032 -11.13465 -10.61253 -10.45237 -10.25428 -9.92935 -9.39590 -8.42038 -6.02537 -1.37311 -0.31955 0.39604 0.87096 1.29510 1.34813 1.42935 1.55122 1.77864 1.93833 2.21749 2.69397 2.90176 3.14187 3.25384 3.33629 3.62784 3.74677 3.78032 3.91482 4.01611 4.13306 4.27525 4.38216 4.39902 4.49785 4.54372 4.56161 4.70720 4.84108 4.89828 5.05625 5.13675 5.20685 5.35921 5.52267 5.89333 6.00187 6.07362 6.36398 6.56416 6.58429 6.77022 6.87102 7.38761 7.94234 8.75336 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020293 B = 0.002303 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.448264 B =12153.543565 C =13227.602391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.962 3.038 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.233 1.233 7 C -0.327 4.327 8 H 0.058 0.942 9 N -0.592 5.592 10 C 0.451 3.549 11 O -0.610 6.610 12 C 0.061 3.939 13 N -0.673 5.673 14 C 0.079 3.921 15 H 0.049 0.951 16 C -0.120 4.120 17 C -0.122 4.122 18 C 0.091 3.909 19 N -0.596 5.596 20 C 0.600 3.400 21 O -0.555 6.555 22 C -0.309 4.309 23 C 0.074 3.926 24 N -0.277 5.277 25 N -0.304 5.304 26 S 0.527 5.473 27 C 0.126 3.874 28 H 0.279 0.721 29 H 0.388 0.612 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.354 0.646 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.081 0.919 39 H 0.226 0.774 40 H 0.074 0.926 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.767 -9.868 0.153 32.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.213 4.213 3 Si 0.782 3.218 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.157 1.157 7 C -0.456 4.456 8 H 0.076 0.924 9 N -0.234 5.234 10 C 0.239 3.761 11 O -0.494 6.494 12 C -0.072 4.072 13 N -0.307 5.307 14 C -0.032 4.032 15 H 0.067 0.933 16 C -0.158 4.158 17 C -0.161 4.161 18 C -0.032 4.032 19 N -0.329 5.329 20 C 0.386 3.614 21 O -0.434 6.434 22 C -0.450 4.450 23 C -0.093 4.093 24 N -0.139 5.139 25 N -0.284 5.284 26 S 0.663 5.337 27 C 0.003 3.997 28 H 0.089 0.911 29 H 0.224 0.776 30 H 0.092 0.908 31 H 0.123 0.877 32 H 0.175 0.825 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.098 0.902 39 H 0.242 0.758 40 H 0.092 0.908 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 31.255 -11.430 -0.814 33.289 hybrid contribution -1.071 2.803 0.755 3.094 sum 30.184 -8.627 -0.059 31.392 Atomic orbital electron populations 1.69798 1.08016 1.29206 1.50298 1.26075 0.96459 1.02578 0.96172 0.85407 0.79469 0.77058 0.79875 1.18389 1.19889 1.15658 1.19009 0.81408 0.94969 1.50217 0.92355 1.42069 1.05916 1.07654 1.67760 1.20877 0.90778 0.83321 0.81157 1.90543 1.71285 1.32572 1.55049 1.21673 0.89790 0.92166 1.03525 1.59909 1.07110 1.11717 1.52012 1.21859 0.86423 0.99347 0.95546 0.93298 1.21731 0.96198 0.95997 1.01874 1.21957 0.94417 1.04814 0.94927 1.22563 0.97595 0.87607 0.95431 1.47974 1.06931 1.22479 1.55476 1.16739 0.83409 0.83136 0.78095 1.90862 1.75466 1.26726 1.50383 1.27885 0.99714 1.00184 1.17181 1.24708 0.84433 1.04119 0.96087 1.70848 1.25280 1.01075 1.16745 1.78519 1.23417 1.06459 1.20039 1.82372 0.94417 1.10478 1.46472 1.21608 0.77079 1.03581 0.97449 0.91141 0.77620 0.90767 0.87723 0.82532 0.90514 0.89830 0.91478 0.86676 0.86946 0.90197 0.75808 0.90776 0.89397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.24 13.96 21.66 0.30 -55.94 16 2 C -0.01 -0.78 5.50 84.92 0.47 -0.31 16 3 Si 0.96 39.29 27.74 68.60 1.90 41.19 16 4 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 6 H -0.23 -8.08 6.52 99.48 0.65 -7.43 16 7 C -0.33 -19.12 10.16 84.04 0.85 -18.26 16 8 H 0.06 4.04 7.39 -2.91 -0.02 4.02 16 9 N -0.59 -27.98 5.09 -306.98 -1.56 -29.55 16 10 C 0.45 20.03 7.82 87.66 0.69 20.72 16 11 O -0.61 -32.94 15.78 -3.09 -0.05 -32.99 16 12 C 0.06 1.83 5.97 85.56 0.51 2.34 16 13 N -0.67 -17.69 5.94 -495.18 -2.94 -20.63 16 14 C 0.08 1.43 2.64 44.99 0.12 1.54 16 15 H 0.05 0.91 7.80 -2.39 -0.02 0.89 16 16 C -0.12 -1.38 5.17 30.62 0.16 -1.22 16 17 C -0.12 -0.77 6.10 30.82 0.19 -0.59 16 18 C 0.09 0.63 5.75 86.51 0.50 1.13 16 19 N -0.60 -8.91 2.97 -822.24 -2.44 -11.35 16 20 C 0.60 11.48 7.66 86.59 0.66 12.14 16 21 O -0.56 -15.23 16.46 -4.10 -0.07 -15.30 16 22 C -0.31 -4.50 6.20 24.62 0.15 -4.35 16 23 C 0.07 1.14 11.62 84.78 0.99 2.12 16 24 N -0.28 -5.03 11.54 -57.87 -0.67 -5.70 16 25 N -0.30 -4.95 12.51 37.02 0.46 -4.48 16 26 S 0.53 4.83 19.89 -56.49 -1.12 3.71 16 27 C 0.13 2.40 5.91 86.36 0.51 2.91 16 28 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 29 H 0.39 15.42 5.76 -92.70 -0.53 14.88 16 30 H 0.07 1.86 8.06 -2.39 -0.02 1.84 16 31 H 0.10 2.88 7.56 -2.39 -0.02 2.86 16 32 H 0.35 9.64 8.03 -89.69 -0.72 8.92 16 33 H 0.08 0.86 8.10 -2.39 -0.02 0.84 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 37 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 38 H 0.08 0.38 3.67 -19.93 -0.07 0.31 16 39 H 0.23 2.69 8.06 -2.91 -0.02 2.66 16 40 H 0.07 1.79 6.47 -2.39 -0.02 1.78 16 41 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -82.31 353.01 -0.66 -82.97 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: -0.27 Total: 29.90 kcal Atomic # 6 Polarization: 12.37 SS G_CDS: 5.79 Total: 18.16 kcal Atomic # 7 Polarization: -120.80 SS G_CDS: -6.84 Total: -127.64 kcal Atomic # 8 Polarization: -48.17 SS G_CDS: -0.12 Total: -48.29 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 1.90 Total: 41.19 kcal Atomic # 16 Polarization: 4.83 SS G_CDS: -1.12 Total: 3.71 kcal Total: -82.31 -0.66 -82.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207507368.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.637 kcal (2) G-P(sol) polarization free energy of solvation -82.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds