Wall clock time and date at job start Tue Mar 31 2020 23:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.64172 * 2 1 4 4 C 1.54936 * 110.87427 * 236.73655 * 2 1 3 5 5 N 1.48538 * 103.22631 * 204.15593 * 4 2 1 6 6 C 1.46901 * 111.00108 * 159.72094 * 5 4 2 7 7 C 1.50701 * 109.46920 * 169.99955 * 6 5 4 8 8 O 1.21292 * 120.00208 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99658 * 179.97438 * 7 6 5 10 10 C 1.37089 * 119.99870 * 180.02562 * 9 7 6 11 11 H 1.08008 * 120.00396 * 0.02562 * 10 9 7 12 12 C 1.38952 * 120.00067 * 180.02562 * 10 9 7 13 13 N 1.31415 * 120.00160 * 180.02562 * 12 10 9 14 14 Si 1.86794 * 119.99801 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47591 * 89.99815 * 14 12 10 16 16 H 1.48507 * 109.46808 * 209.99558 * 14 12 10 17 17 H 1.48494 * 109.47086 * 329.99070 * 14 12 10 18 18 C 1.47905 * 105.81618 * 39.20829 * 5 4 2 19 19 C 1.53991 * 107.06181 * 334.66942 * 18 5 4 20 20 H 1.08998 * 110.39385 * 120.17963 * 19 18 5 21 21 N 1.46504 * 110.31121 * 242.30719 * 19 18 5 22 22 C 1.34773 * 120.00033 * 270.71894 * 21 19 18 23 23 O 1.21602 * 120.00037 * 359.97438 * 22 21 19 24 24 C 1.47443 * 119.99815 * 179.97438 * 22 21 19 25 25 C 1.37982 * 124.15242 * 179.97438 * 24 22 21 26 26 S 1.72108 * 104.03410 * 179.97438 * 25 24 22 27 27 N 1.56410 * 96.15109 * 0.02562 * 26 25 24 28 28 N 1.27418 * 109.87634 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.47236 * 296.84979 * 1 2 3 30 30 H 1.09001 * 109.47386 * 56.84846 * 1 2 3 31 31 H 1.08997 * 109.47469 * 176.85189 * 1 2 3 32 32 H 1.08999 * 110.67175 * 322.59131 * 4 2 1 33 33 H 1.08998 * 110.66520 * 85.72847 * 4 2 1 34 34 H 1.09000 * 109.47053 * 290.00543 * 6 5 4 35 35 H 1.09003 * 109.46607 * 50.00045 * 6 5 4 36 36 H 0.96996 * 119.99911 * 0.02562 * 9 7 6 37 37 H 0.96996 * 120.00420 * 180.02562 * 13 12 10 38 38 H 1.08999 * 109.91822 * 215.31274 * 18 5 4 39 39 H 1.09006 * 109.91354 * 94.02088 * 18 5 4 40 40 H 0.96998 * 119.99393 * 90.71475 * 21 19 18 41 41 H 1.08000 * 127.98358 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0821 -0.7940 -1.2105 5 7 3.4359 -1.2051 -0.7583 6 6 3.9293 -2.3451 -1.5426 7 6 5.3852 -2.5772 -1.2302 8 8 5.9555 -1.8636 -0.4323 9 7 6.0532 -3.5784 -1.8366 10 6 7.3774 -3.7900 -1.5520 11 1 7.8854 -3.1545 -0.8415 12 6 8.0663 -4.8219 -2.1776 13 7 9.3356 -5.0250 -1.9044 14 14 7.1881 -5.9204 -3.4069 15 1 7.3174 -5.3420 -4.7685 16 1 7.7977 -7.2744 -3.3845 17 1 5.7513 -6.0184 -3.0450 18 6 3.2920 -1.5662 0.6687 19 6 2.0770 -0.7907 1.2107 20 1 1.3212 -1.4816 1.5840 21 7 2.4931 0.1289 2.2726 22 6 2.5190 -0.2887 3.5537 23 8 2.1965 -1.4286 3.8283 24 6 2.9382 0.6366 4.6223 25 6 2.9959 0.3007 5.9594 26 16 3.5405 1.7409 6.7285 27 7 3.6489 2.5968 5.4239 28 7 3.3070 1.8959 4.4162 29 1 -0.3633 0.4641 0.9169 30 1 -0.3634 0.5620 -0.8604 31 1 -0.3634 -1.0261 -0.0564 32 1 1.4623 -1.6676 -1.4126 33 1 2.1482 -0.1556 -2.0915 34 1 3.3563 -3.2366 -1.2879 35 1 3.8153 -2.1313 -2.6054 36 1 5.5970 -4.1493 -2.4744 37 1 9.8166 -5.7451 -2.3414 38 1 4.1898 -1.2799 1.2166 39 1 3.1211 -2.6384 0.7650 40 1 2.7500 1.0382 2.0535 41 1 2.7556 -0.6474 6.4175 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208198661.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:03 Heat of formation + Delta-G solvation = 19.829417 kcal Electronic energy + Delta-G solvation = -26650.603010 eV Core-core repulsion = 22693.765620 eV Total energy + Delta-G solvation = -3956.837390 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.39502 -40.07023 -38.83173 -37.77636 -34.66192 -33.87848 -32.83535 -32.36322 -31.62064 -29.19406 -27.73320 -27.17077 -25.47213 -24.37709 -23.23482 -21.46928 -20.86801 -20.68290 -19.33200 -19.21965 -18.18534 -17.26094 -16.63644 -16.29127 -16.02078 -15.83020 -15.43086 -15.13120 -14.82235 -14.53227 -14.29700 -14.02360 -13.43831 -13.32111 -13.12490 -12.95899 -12.73870 -12.56401 -12.35205 -12.31947 -12.08559 -11.88230 -11.49828 -11.33952 -11.11330 -10.98933 -10.87257 -10.71393 -10.57368 -10.42215 -10.37672 -10.26503 -9.94656 -9.52745 -9.22946 -8.60503 -8.14730 -8.04813 -6.27810 -3.78959 -0.28125 0.56646 1.14509 1.18741 2.83109 2.93643 3.04456 3.08644 3.16659 3.51933 3.78072 3.95329 4.12969 4.27414 4.36289 4.56605 4.60631 4.78097 4.88268 4.99349 5.18893 5.23618 5.28860 5.30081 5.47911 5.54940 5.62659 5.68363 5.72125 5.80171 5.89821 5.94550 6.03191 6.19074 6.46426 6.99369 7.08345 7.08421 7.35243 7.61871 7.88723 8.17942 8.64148 8.99093 9.46132 9.88020 10.85558 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012796 B = 0.002643 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.580109 B =10591.603946 C =12144.237326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.100 4.100 3 H 0.092 0.908 4 C 0.038 3.962 5 N -0.490 5.490 6 C 0.033 3.967 7 C 0.454 3.546 8 O -0.557 6.557 9 N -0.594 5.594 10 C -0.303 4.303 11 H 0.119 0.881 12 C 0.040 3.960 13 N -0.883 5.883 14 Si 0.880 3.120 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.270 1.270 18 C 0.033 3.967 19 C 0.137 3.863 20 H 0.099 0.901 21 N -0.695 5.695 22 C 0.606 3.394 23 O -0.524 6.524 24 C -0.021 4.021 25 C -0.235 4.235 26 S 0.460 5.540 27 N -0.288 5.288 28 N -0.208 5.208 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.087 0.913 34 H 0.052 0.948 35 H 0.091 0.909 36 H 0.370 0.630 37 H 0.273 0.727 38 H 0.098 0.902 39 H 0.050 0.950 40 H 0.412 0.588 41 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.629 11.075 11.598 26.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.120 4.120 3 H 0.111 0.889 4 C -0.090 4.090 5 N -0.214 5.214 6 C -0.099 4.099 7 C 0.239 3.761 8 O -0.438 6.438 9 N -0.234 5.234 10 C -0.431 4.431 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.524 5.524 14 Si 0.706 3.294 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.196 1.196 18 C -0.096 4.096 19 C 0.032 3.968 20 H 0.117 0.883 21 N -0.346 5.346 22 C 0.387 3.613 23 O -0.399 6.399 24 C -0.168 4.168 25 C -0.392 4.392 26 S 0.596 5.404 27 N -0.269 5.269 28 N -0.079 5.079 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.105 0.895 34 H 0.070 0.930 35 H 0.110 0.890 36 H 0.202 0.798 37 H 0.083 0.917 38 H 0.116 0.884 39 H 0.068 0.932 40 H 0.249 0.751 41 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -19.273 12.798 12.615 26.351 hybrid contribution -1.289 -2.747 -1.682 3.469 sum -20.561 10.051 10.933 25.363 Atomic orbital electron populations 1.21777 0.93864 1.02215 1.02134 1.22348 0.95782 1.00326 0.93516 0.88948 1.23337 0.89456 0.98544 0.97702 1.64488 1.21259 1.33693 1.01947 1.22128 0.95945 0.92600 0.99197 1.19631 0.87705 0.83422 0.85327 1.90559 1.69159 1.47628 1.36474 1.42201 1.11475 1.29396 1.40292 1.19419 0.83675 1.15221 1.24816 0.86349 1.25031 0.95606 0.97510 0.98081 1.69622 1.08129 1.31786 1.42822 0.86670 0.79510 0.81163 0.82027 1.19626 1.20235 1.19551 1.23334 0.98560 0.97942 0.89730 1.22098 0.96608 0.91518 0.86548 0.88271 1.45866 1.66715 1.16652 1.05327 1.16632 0.77777 0.85373 0.81560 1.90852 1.48597 1.17854 1.82642 1.22677 1.06807 0.92488 0.94813 1.28905 1.04882 1.08522 0.96910 1.81558 1.44392 0.95081 1.19362 1.78662 1.22411 1.26502 0.99312 1.71525 1.10682 1.03544 1.22158 0.92343 0.91954 0.92352 0.93410 0.89458 0.92958 0.89036 0.79782 0.91670 0.88406 0.93178 0.75110 0.77368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.17 37.16 0.34 -0.74 16 2 C -0.10 -0.99 3.36 -88.76 -0.30 -1.28 16 3 H 0.09 0.89 7.76 -51.93 -0.40 0.49 16 4 C 0.04 0.42 5.97 -1.90 -0.01 0.41 16 5 N -0.49 -7.76 4.91 -231.88 -1.14 -8.90 16 6 C 0.03 0.56 5.27 -4.97 -0.03 0.53 16 7 C 0.45 10.53 7.61 -10.98 -0.08 10.45 16 8 O -0.56 -15.26 14.87 5.55 0.08 -15.18 16 9 N -0.59 -14.42 5.09 -10.96 -0.06 -14.47 16 10 C -0.30 -8.71 10.16 -14.94 -0.15 -8.86 16 11 H 0.12 3.90 7.39 -52.48 -0.39 3.52 16 12 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 13 N -0.88 -26.21 13.96 55.50 0.77 -25.43 16 14 Si 0.88 19.65 27.74 -169.99 -4.71 14.93 16 15 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 16 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 17 H -0.27 -5.49 6.52 56.52 0.37 -5.12 16 18 C 0.03 0.53 5.66 -2.75 -0.02 0.52 16 19 C 0.14 1.68 2.92 -66.57 -0.19 1.49 16 20 H 0.10 1.22 7.26 -51.93 -0.38 0.84 16 21 N -0.69 -8.44 5.00 -53.56 -0.27 -8.71 16 22 C 0.61 8.04 7.81 -12.51 -0.10 7.94 16 23 O -0.52 -8.22 16.45 5.28 0.09 -8.13 16 24 C -0.02 -0.24 6.87 -83.78 -0.58 -0.81 16 25 C -0.24 -1.97 11.21 30.64 0.34 -1.63 16 26 S 0.46 3.08 23.38 -107.50 -2.51 0.56 16 27 N -0.29 -3.09 12.49 60.35 0.75 -2.33 16 28 N -0.21 -2.50 11.24 32.74 0.37 -2.13 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.44 8.11 -51.93 -0.42 0.01 16 32 H 0.05 0.48 7.91 -51.93 -0.41 0.07 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.79 7.73 -51.93 -0.40 0.39 16 35 H 0.09 1.33 8.08 -51.93 -0.42 0.91 16 36 H 0.37 7.86 5.76 -40.82 -0.24 7.63 16 37 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.10 1.92 7.31 -51.93 -0.38 1.54 16 39 H 0.05 0.83 7.52 -51.93 -0.39 0.44 16 40 H 0.41 4.57 7.96 -40.82 -0.33 4.25 16 41 H 0.21 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 360.95 15.07 5.44 5.44 Total: -1.00 -36.14 360.95 -7.06 -43.20 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -5.01 Total: 12.12 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: -0.87 Total: 9.03 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: 0.43 Total: -61.97 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: 0.17 Total: -23.31 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.71 Total: 14.93 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -2.51 Total: 0.56 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.14 -7.06 -43.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208198661.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.030 kcal (2) G-P(sol) polarization free energy of solvation -36.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds