Wall clock time and date at job start Tue Mar 31 2020 23:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.64172 * 2 1 4 4 C 1.54936 * 110.87427 * 236.73655 * 2 1 3 5 5 N 1.48538 * 103.22631 * 204.15593 * 4 2 1 6 6 C 1.46901 * 111.00108 * 159.72094 * 5 4 2 7 7 C 1.50701 * 109.46920 * 169.99955 * 6 5 4 8 8 O 1.21292 * 120.00208 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99658 * 179.97438 * 7 6 5 10 10 C 1.37089 * 119.99870 * 180.02562 * 9 7 6 11 11 H 1.08008 * 120.00396 * 0.02562 * 10 9 7 12 12 C 1.38952 * 120.00067 * 180.02562 * 10 9 7 13 13 N 1.31415 * 120.00160 * 180.02562 * 12 10 9 14 14 Si 1.86794 * 119.99801 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47591 * 89.99815 * 14 12 10 16 16 H 1.48507 * 109.46808 * 209.99558 * 14 12 10 17 17 H 1.48494 * 109.47086 * 329.99070 * 14 12 10 18 18 C 1.47905 * 105.81618 * 39.20829 * 5 4 2 19 19 C 1.53991 * 107.06181 * 334.66942 * 18 5 4 20 20 H 1.08998 * 110.39385 * 120.17963 * 19 18 5 21 21 N 1.46504 * 110.31121 * 242.30719 * 19 18 5 22 22 C 1.34773 * 120.00033 * 270.71894 * 21 19 18 23 23 O 1.21602 * 120.00037 * 359.97438 * 22 21 19 24 24 C 1.47443 * 119.99815 * 179.97438 * 22 21 19 25 25 C 1.37982 * 124.15242 * 179.97438 * 24 22 21 26 26 S 1.72108 * 104.03410 * 179.97438 * 25 24 22 27 27 N 1.56410 * 96.15109 * 0.02562 * 26 25 24 28 28 N 1.27418 * 109.87634 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.47236 * 296.84979 * 1 2 3 30 30 H 1.09001 * 109.47386 * 56.84846 * 1 2 3 31 31 H 1.08997 * 109.47469 * 176.85189 * 1 2 3 32 32 H 1.08999 * 110.67175 * 322.59131 * 4 2 1 33 33 H 1.08998 * 110.66520 * 85.72847 * 4 2 1 34 34 H 1.09000 * 109.47053 * 290.00543 * 6 5 4 35 35 H 1.09003 * 109.46607 * 50.00045 * 6 5 4 36 36 H 0.96996 * 119.99911 * 0.02562 * 9 7 6 37 37 H 0.96996 * 120.00420 * 180.02562 * 13 12 10 38 38 H 1.08999 * 109.91822 * 215.31274 * 18 5 4 39 39 H 1.09006 * 109.91354 * 94.02088 * 18 5 4 40 40 H 0.96998 * 119.99393 * 90.71475 * 21 19 18 41 41 H 1.08000 * 127.98358 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0821 -0.7940 -1.2105 5 7 3.4359 -1.2051 -0.7583 6 6 3.9293 -2.3451 -1.5426 7 6 5.3852 -2.5772 -1.2302 8 8 5.9555 -1.8636 -0.4323 9 7 6.0532 -3.5784 -1.8366 10 6 7.3774 -3.7900 -1.5520 11 1 7.8854 -3.1545 -0.8415 12 6 8.0663 -4.8219 -2.1776 13 7 9.3356 -5.0250 -1.9044 14 14 7.1881 -5.9204 -3.4069 15 1 7.3174 -5.3420 -4.7685 16 1 7.7977 -7.2744 -3.3845 17 1 5.7513 -6.0184 -3.0450 18 6 3.2920 -1.5662 0.6687 19 6 2.0770 -0.7907 1.2107 20 1 1.3212 -1.4816 1.5840 21 7 2.4931 0.1289 2.2726 22 6 2.5190 -0.2887 3.5537 23 8 2.1965 -1.4286 3.8283 24 6 2.9382 0.6366 4.6223 25 6 2.9959 0.3007 5.9594 26 16 3.5405 1.7409 6.7285 27 7 3.6489 2.5968 5.4239 28 7 3.3070 1.8959 4.4162 29 1 -0.3633 0.4641 0.9169 30 1 -0.3634 0.5620 -0.8604 31 1 -0.3634 -1.0261 -0.0564 32 1 1.4623 -1.6676 -1.4126 33 1 2.1482 -0.1556 -2.0915 34 1 3.3563 -3.2366 -1.2879 35 1 3.8153 -2.1313 -2.6054 36 1 5.5970 -4.1493 -2.4744 37 1 9.8166 -5.7451 -2.3414 38 1 4.1898 -1.2799 1.2166 39 1 3.1211 -2.6384 0.7650 40 1 2.7500 1.0382 2.0535 41 1 2.7556 -0.6474 6.4175 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208198661.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:02 Heat of formation + Delta-G solvation = -11.853076 kcal Electronic energy + Delta-G solvation = -26651.976866 eV Core-core repulsion = 22693.765620 eV Total energy + Delta-G solvation = -3958.211246 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.22830 -41.14138 -40.26528 -39.21879 -36.11915 -35.59138 -33.87326 -33.68517 -33.15403 -30.33170 -28.92142 -28.03820 -26.79453 -25.75344 -24.37608 -22.48477 -21.82630 -21.67670 -21.17920 -20.21070 -20.04556 -18.20719 -17.63968 -17.55541 -17.12408 -16.87330 -16.77325 -16.52672 -16.17791 -15.62378 -15.53164 -15.32016 -15.01881 -14.64866 -14.44056 -14.13542 -14.01127 -13.72120 -13.45108 -13.35617 -13.12465 -13.04509 -12.97042 -12.50875 -12.42268 -12.34602 -11.99811 -11.90993 -11.70154 -11.53134 -11.50697 -11.30168 -11.21289 -10.93968 -10.44084 -10.27266 -10.23992 -9.34082 -8.42322 -6.03291 -0.97953 -0.08809 0.25886 0.49849 1.28833 1.34876 1.43549 1.87681 1.96066 2.00301 2.22252 2.63232 2.69612 3.12235 3.19810 3.49680 3.59099 3.60341 3.80680 3.97420 4.12152 4.22101 4.28676 4.33097 4.37325 4.45991 4.56436 4.64010 4.82281 4.83993 4.91321 5.05956 5.18462 5.32876 5.42837 5.51792 5.82268 5.90495 6.01932 6.16674 6.48567 6.59278 6.87763 6.89870 7.39096 7.97582 8.75749 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012796 B = 0.002643 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.580109 B =10591.603946 C =12144.237326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.090 4.090 3 H 0.094 0.906 4 C 0.040 3.960 5 N -0.515 5.515 6 C 0.045 3.955 7 C 0.449 3.551 8 O -0.609 6.609 9 N -0.593 5.593 10 C -0.328 4.328 11 H 0.051 0.949 12 C -0.017 4.017 13 N -0.937 5.937 14 Si 0.967 3.033 15 H -0.255 1.255 16 H -0.275 1.275 17 H -0.232 1.232 18 C 0.037 3.963 19 C 0.144 3.856 20 H 0.102 0.898 21 N -0.691 5.691 22 C 0.603 3.397 23 O -0.556 6.556 24 C -0.048 4.048 25 C -0.239 4.239 26 S 0.567 5.433 27 N -0.332 5.332 28 N -0.233 5.233 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.128 0.872 36 H 0.390 0.610 37 H 0.279 0.721 38 H 0.048 0.952 39 H 0.039 0.961 40 H 0.416 0.584 41 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.201 10.656 10.392 28.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.109 4.109 3 H 0.112 0.888 4 C -0.087 4.087 5 N -0.240 5.240 6 C -0.086 4.086 7 C 0.237 3.763 8 O -0.493 6.493 9 N -0.236 5.236 10 C -0.457 4.457 11 H 0.069 0.931 12 C -0.215 4.215 13 N -0.577 5.577 14 Si 0.787 3.213 15 H -0.179 1.179 16 H -0.200 1.200 17 H -0.155 1.155 18 C -0.092 4.092 19 C 0.038 3.962 20 H 0.120 0.880 21 N -0.341 5.341 22 C 0.385 3.615 23 O -0.434 6.434 24 C -0.195 4.195 25 C -0.395 4.395 26 S 0.702 5.298 27 N -0.312 5.312 28 N -0.102 5.102 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.123 0.877 34 H 0.098 0.902 35 H 0.146 0.854 36 H 0.225 0.775 37 H 0.089 0.911 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.254 0.746 41 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -22.878 12.420 11.391 28.415 hybrid contribution -0.053 -2.500 -1.066 2.718 sum -22.931 9.920 10.325 27.034 Atomic orbital electron populations 1.21736 0.91532 1.02967 1.03027 1.22348 0.97462 0.99702 0.91432 0.88805 1.23488 0.86977 0.99699 0.98496 1.64371 1.24689 1.33365 1.01556 1.22064 0.90837 0.94451 1.01295 1.20993 0.90289 0.81649 0.83383 1.90543 1.71136 1.49197 1.38417 1.42025 1.09898 1.30431 1.41199 1.18978 0.86055 1.15630 1.25054 0.93057 1.26146 0.96327 0.98800 1.00229 1.69811 1.10529 1.32887 1.44510 0.85338 0.79852 0.77694 0.78461 1.17891 1.20010 1.15483 1.23157 0.98041 0.97798 0.90230 1.22065 0.94865 0.91812 0.87433 0.88040 1.45883 1.66226 1.16770 1.05256 1.16922 0.77119 0.85296 0.82170 1.90815 1.50253 1.19112 1.83213 1.22543 1.08819 0.92709 0.95470 1.29301 1.03629 1.10315 0.96297 1.81138 1.40858 0.92134 1.15645 1.78305 1.23768 1.28235 1.00928 1.71557 1.11654 1.03771 1.23267 0.92297 0.90125 0.91775 0.91150 0.87734 0.90155 0.85410 0.77475 0.91141 0.93356 0.94260 0.74633 0.75476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.17 71.98 0.66 -0.97 16 2 C -0.09 -1.59 3.36 -9.59 -0.03 -1.62 16 3 H 0.09 1.65 7.76 -2.39 -0.02 1.63 16 4 C 0.04 0.77 5.97 86.65 0.52 1.29 16 5 N -0.52 -15.81 4.91 -887.54 -4.36 -20.16 16 6 C 0.04 1.42 5.27 85.56 0.45 1.87 16 7 C 0.45 21.19 7.61 87.66 0.67 21.86 16 8 O -0.61 -35.46 14.87 -3.07 -0.05 -35.50 16 9 N -0.59 -28.94 5.09 -306.98 -1.56 -30.50 16 10 C -0.33 -19.82 10.16 84.04 0.85 -18.97 16 11 H 0.05 3.71 7.39 -2.91 -0.02 3.68 16 12 C -0.02 -0.95 5.50 84.93 0.47 -0.48 16 13 N -0.94 -57.76 13.96 21.66 0.30 -57.46 16 14 Si 0.97 39.54 27.74 68.60 1.90 41.44 16 15 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 16 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 17 H -0.23 -7.97 6.52 99.48 0.65 -7.32 16 18 C 0.04 1.23 5.66 86.44 0.49 1.72 16 19 C 0.14 3.50 2.92 45.87 0.13 3.63 16 20 H 0.10 2.45 7.26 -2.39 -0.02 2.43 16 21 N -0.69 -17.44 5.00 -441.62 -2.21 -19.65 16 22 C 0.60 16.70 7.81 86.67 0.68 17.38 16 23 O -0.56 -18.08 16.45 -4.04 -0.07 -18.15 16 24 C -0.05 -1.12 6.87 41.36 0.28 -0.83 16 25 C -0.24 -3.82 11.21 67.76 0.76 -3.06 16 26 S 0.57 6.64 23.38 -56.49 -1.32 5.31 16 27 N -0.33 -6.99 12.49 37.02 0.46 -6.52 16 28 N -0.23 -5.71 11.24 -50.34 -0.57 -6.28 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.73 8.11 -2.39 -0.02 0.71 16 32 H 0.07 1.09 7.91 -2.39 -0.02 1.07 16 33 H 0.10 1.70 8.14 -2.39 -0.02 1.69 16 34 H 0.08 2.15 7.73 -2.39 -0.02 2.13 16 35 H 0.13 3.17 8.08 -2.39 -0.02 3.15 16 36 H 0.39 15.62 5.76 -92.71 -0.53 15.09 16 37 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 38 H 0.05 2.06 7.31 -2.39 -0.02 2.04 16 39 H 0.04 1.33 7.52 -2.38 -0.02 1.32 16 40 H 0.42 9.69 7.96 -92.71 -0.74 8.95 16 41 H 0.23 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -88.00 360.95 -1.76 -89.76 By element: Atomic # 1 Polarization: 36.14 SS G_CDS: -0.23 Total: 35.91 kcal Atomic # 6 Polarization: 15.88 SS G_CDS: 5.93 Total: 21.81 kcal Atomic # 7 Polarization: -132.65 SS G_CDS: -7.93 Total: -140.58 kcal Atomic # 8 Polarization: -53.54 SS G_CDS: -0.11 Total: -53.65 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 1.90 Total: 41.44 kcal Atomic # 16 Polarization: 6.64 SS G_CDS: -1.32 Total: 5.31 kcal Total: -88.00 -1.76 -89.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208198661.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.906 kcal (2) G-P(sol) polarization free energy of solvation -87.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds