Wall clock time and date at job start Tue Mar 31 2020 22:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86793 * 120.00450 * 2 1 4 4 H 1.48500 * 109.47352 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47314 * 300.00075 * 3 2 1 6 6 H 1.48503 * 109.47174 * 60.00062 * 3 2 1 7 7 C 1.38955 * 119.99353 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99815 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00307 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00000 * 180.02562 * 9 7 2 11 11 O 1.21286 * 120.00175 * 0.02562 * 10 9 7 12 12 C 1.50710 * 120.00138 * 180.02562 * 10 9 7 13 13 N 1.46496 * 109.47149 * 179.97438 * 12 10 9 14 14 C 1.34777 * 119.99585 * 179.97438 * 13 12 10 15 15 O 1.21579 * 120.00359 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99406 * 180.02562 * 14 13 12 17 17 C 1.46503 * 119.99746 * 184.46651 * 16 14 13 18 18 C 1.52998 * 109.61746 * 293.25000 * 17 16 14 19 19 F 1.39898 * 109.47311 * 186.43529 * 18 17 16 20 20 F 1.39903 * 109.46742 * 306.43073 * 18 17 16 21 21 F 1.39899 * 109.47574 * 66.43089 * 18 17 16 22 22 C 1.53178 * 109.54226 * 53.46789 * 17 16 14 23 23 C 1.53094 * 109.16553 * 62.88742 * 22 17 16 24 24 O 1.42901 * 109.42398 * 57.60000 * 23 22 17 25 25 C 1.42900 * 114.09872 * 298.86570 * 24 23 22 26 26 C 1.53091 * 109.42596 * 61.13816 * 25 24 23 27 27 H 0.97005 * 119.99517 * 0.02562 * 1 2 3 28 28 H 0.97001 * 119.99804 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.46535 * 59.99938 * 12 10 9 30 30 H 1.08998 * 109.46739 * 300.00109 * 12 10 9 31 31 H 0.97001 * 120.00309 * 0.02562 * 13 12 10 32 32 H 0.97000 * 120.00439 * 4.47026 * 16 14 13 33 33 H 1.09005 * 109.52418 * 302.97771 * 22 17 16 34 34 H 1.08998 * 109.57899 * 182.82616 * 22 17 16 35 35 H 1.09000 * 109.48238 * 177.59492 * 23 22 17 36 36 H 1.09001 * 109.47651 * 297.61380 * 23 22 17 37 37 H 1.09001 * 109.47361 * 301.15301 * 25 24 23 38 38 H 1.09000 * 109.48950 * 181.13326 * 25 24 23 39 39 H 1.09002 * 109.52300 * 182.49260 * 26 25 24 40 40 H 1.08997 * 109.52597 * 62.30206 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7082 1.3462 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8895 2.3963 1.2125 7 6 2.0087 -1.2035 -0.0005 8 1 3.0887 -1.2035 -0.0001 9 7 1.3232 -2.3907 -0.0005 10 6 1.9970 -3.5579 -0.0005 11 8 3.2099 -3.5580 -0.0001 12 6 1.2434 -4.8631 -0.0011 13 7 2.1953 -5.9766 -0.0016 14 6 1.7459 -7.2472 -0.0017 15 8 0.5506 -7.4693 -0.0008 16 7 2.6218 -8.2717 -0.0016 17 6 2.1363 -9.6504 -0.1005 18 6 1.3519 -10.0106 1.1628 19 9 1.0157 -11.3682 1.1317 20 9 2.1386 -9.7507 2.2901 21 9 0.1843 -9.2422 1.2218 22 6 1.2261 -9.7865 -1.3249 23 6 2.0395 -9.5009 -2.5901 24 8 3.1478 -10.4007 -2.6557 25 6 4.0584 -10.2857 -1.5604 26 6 3.3260 -10.6028 -0.2540 27 1 -0.4850 0.8401 -0.0004 28 1 0.3532 -2.3906 -0.0005 29 1 0.6171 -4.9205 -0.8914 30 1 0.6164 -4.9209 0.8886 31 1 3.1490 -5.7994 -0.0012 32 1 3.5735 -8.0962 0.0639 33 1 0.4058 -9.0725 -1.2503 34 1 0.8246 -10.7988 -1.3709 35 1 1.4074 -9.6381 -3.4674 36 1 2.4057 -8.4746 -2.5628 37 1 4.4512 -9.2697 -1.5196 38 1 4.8808 -10.9881 -1.6959 39 1 4.0077 -10.4726 0.5866 40 1 2.9680 -11.6320 -0.2777 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208756122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:50 Heat of formation + Delta-G solvation = -281.799481 kcal Electronic energy + Delta-G solvation = -31146.014387 eV Core-core repulsion = 26159.195024 eV Total energy + Delta-G solvation = -4986.819363 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -51.10503 -48.64560 -48.49189 -41.87078 -40.44824 -39.63744 -36.69538 -36.18166 -35.32623 -33.40060 -32.81277 -32.28556 -29.15989 -28.28041 -26.38355 -24.90508 -24.28710 -22.57886 -21.40409 -20.96281 -20.16772 -19.80405 -19.42270 -19.26526 -18.97781 -17.62261 -17.40414 -17.04482 -16.86562 -16.59636 -16.35930 -16.07039 -15.75657 -15.67697 -15.60109 -15.48792 -15.13693 -15.00650 -14.97177 -14.69785 -14.66886 -14.46694 -13.95942 -13.88312 -13.55721 -13.52978 -13.38878 -13.24901 -12.91306 -12.48490 -12.43832 -12.11387 -12.09673 -11.62749 -11.57316 -11.13261 -10.80036 -10.55062 -10.47402 -10.12020 -10.02381 -8.50849 -6.00768 1.25628 1.35446 1.43938 1.57026 1.58306 1.90388 2.04364 2.27741 2.71231 2.80083 2.85507 2.90351 3.13320 3.16809 3.26803 3.53547 3.60009 3.84824 4.14399 4.17661 4.22177 4.29164 4.44039 4.46723 4.51757 4.63741 4.74817 4.87948 4.92482 4.97993 5.14475 5.29238 5.39340 5.75235 5.92833 6.15911 6.48325 6.86785 7.04254 7.37858 7.46697 7.95022 8.66247 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021015 B = 0.002613 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.035272 B =10711.625926 C =11228.545020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.996 3.004 4 H -0.269 1.269 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.336 4.336 8 H 0.087 0.913 9 N -0.560 5.560 10 C 0.434 3.566 11 O -0.623 6.623 12 C 0.144 3.856 13 N -0.718 5.718 14 C 0.701 3.299 15 O -0.595 6.595 16 N -0.723 5.723 17 C 0.164 3.836 18 C 0.432 3.568 19 F -0.180 7.180 20 F -0.187 7.187 21 F -0.173 7.173 22 C -0.172 4.172 23 C 0.075 3.925 24 O -0.389 6.389 25 C 0.061 3.939 26 C -0.157 4.157 27 H 0.279 0.721 28 H 0.399 0.601 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.411 0.589 32 H 0.420 0.580 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.111 0.889 36 H 0.047 0.953 37 H 0.062 0.938 38 H 0.130 0.870 39 H 0.112 0.888 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.469 -22.739 -2.055 23.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.211 4.211 3 Si 0.819 3.181 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.465 4.465 8 H 0.105 0.895 9 N -0.195 5.195 10 C 0.221 3.779 11 O -0.511 6.511 12 C 0.015 3.985 13 N -0.376 5.376 14 C 0.401 3.599 15 O -0.474 6.474 16 N -0.382 5.382 17 C 0.074 3.926 18 C 0.376 3.624 19 F -0.162 7.162 20 F -0.169 7.169 21 F -0.154 7.154 22 C -0.211 4.211 23 C -0.002 4.002 24 O -0.308 6.308 25 C -0.015 4.015 26 C -0.194 4.194 27 H 0.089 0.911 28 H 0.233 0.767 29 H 0.114 0.886 30 H 0.108 0.892 31 H 0.248 0.752 32 H 0.258 0.742 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.129 0.871 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.147 0.853 39 H 0.131 0.869 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.043 -22.864 -2.188 23.516 hybrid contribution 0.087 1.349 0.833 1.588 sum 5.130 -21.516 -1.355 22.160 Atomic orbital electron populations 1.69687 1.07008 1.29535 1.49407 1.26114 0.96510 1.02660 0.95847 0.84823 0.78182 0.76811 0.78248 1.19361 1.19668 1.19785 1.19766 0.92952 0.83533 1.50242 0.89538 1.41837 1.09595 1.04610 1.63461 1.20427 0.88131 0.85911 0.83476 1.90470 1.15135 1.87546 1.57981 1.20586 0.90857 0.82867 1.04178 1.44655 1.11147 1.03034 1.78726 1.15956 0.85313 0.80737 0.77879 1.90960 1.14746 1.83903 1.57742 1.44897 1.10375 1.02808 1.80118 1.21315 0.97041 0.83478 0.90780 1.21429 0.79508 0.74526 0.86962 1.93156 1.93016 1.33304 1.96699 1.93154 1.74343 1.93838 1.55562 1.93317 1.50521 1.74905 1.96631 1.22719 0.99628 1.05406 0.93310 1.22453 0.87719 0.92920 0.97088 1.87955 1.36438 1.60636 1.45773 1.22768 0.91927 1.03170 0.83641 1.22654 0.95306 0.99333 1.02146 0.91111 0.76723 0.88623 0.89212 0.75157 0.74171 0.88696 0.88373 0.87135 0.93418 0.91950 0.85253 0.86919 0.87042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.18 13.05 21.66 0.28 -47.90 16 2 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 3 Si 1.00 41.24 29.55 68.60 2.03 43.26 16 4 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 6 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.34 -18.17 9.68 84.04 0.81 -17.35 16 8 H 0.09 4.93 7.16 -2.91 -0.02 4.91 16 9 N -0.56 -27.44 5.29 -306.98 -1.62 -29.06 16 10 C 0.43 19.27 7.85 87.66 0.69 19.95 16 11 O -0.62 -30.96 15.24 -3.05 -0.05 -31.00 16 12 C 0.14 4.97 6.15 85.64 0.53 5.50 16 13 N -0.72 -21.55 5.53 -482.30 -2.67 -24.22 16 14 C 0.70 19.68 7.94 179.05 1.42 21.10 16 15 O -0.59 -20.09 11.13 -3.96 -0.04 -20.13 16 16 N -0.72 -14.35 3.95 -437.47 -1.73 -16.08 16 17 C 0.16 3.03 0.34 3.72 0.00 3.03 16 18 C 0.43 10.11 2.30 71.98 0.17 10.27 16 19 F -0.18 -3.84 16.18 44.97 0.73 -3.11 16 20 F -0.19 -4.49 16.93 44.97 0.76 -3.73 16 21 F -0.17 -5.31 13.38 44.97 0.60 -4.71 16 22 C -0.17 -3.35 4.41 30.69 0.14 -3.22 16 23 C 0.07 1.30 6.68 72.01 0.48 1.79 16 24 O -0.39 -6.39 10.77 -148.98 -1.60 -7.99 16 25 C 0.06 0.64 6.67 72.01 0.48 1.12 16 26 C -0.16 -1.74 4.71 30.68 0.14 -1.60 16 27 H 0.28 13.73 8.31 -92.70 -0.77 12.96 16 28 H 0.40 18.86 7.90 -92.71 -0.73 18.13 16 29 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 30 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 31 H 0.41 11.95 7.46 -92.71 -0.69 11.26 16 32 H 0.42 6.04 7.79 -92.71 -0.72 5.32 16 33 H 0.09 2.41 5.56 -2.38 -0.01 2.40 16 34 H 0.10 1.70 7.91 -2.39 -0.02 1.68 16 35 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.05 0.92 7.75 -2.39 -0.02 0.90 16 37 H 0.06 0.60 7.25 -2.39 -0.02 0.58 16 38 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.11 0.88 8.07 -2.39 -0.02 0.86 16 40 H 0.11 1.14 7.56 -2.39 -0.02 1.12 16 Total: -1.00 -67.21 339.82 1.01 -66.19 By element: Atomic # 1 Polarization: 38.96 SS G_CDS: -1.00 Total: 37.97 kcal Atomic # 6 Polarization: 35.19 SS G_CDS: 5.33 Total: 40.52 kcal Atomic # 7 Polarization: -111.52 SS G_CDS: -5.74 Total: -117.26 kcal Atomic # 8 Polarization: -57.43 SS G_CDS: -1.69 Total: -59.13 kcal Atomic # 9 Polarization: -13.64 SS G_CDS: 2.09 Total: -11.55 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.26 kcal Total: -67.21 1.01 -66.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208756122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -215.606 kcal (2) G-P(sol) polarization free energy of solvation -67.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -282.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -281.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds