Wall clock time and date at job start Tue Mar 31 2020 22:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86803 * 119.99606 * 2 1 4 4 H 1.48497 * 109.47519 * 270.00065 * 3 2 1 5 5 H 1.48506 * 109.47160 * 29.99902 * 3 2 1 6 6 H 1.48504 * 109.47294 * 150.00013 * 3 2 1 7 7 C 1.38943 * 120.00420 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99971 * 359.97438 * 7 2 1 9 9 N 1.37101 * 119.99905 * 180.02562 * 7 2 1 10 10 C 1.34783 * 119.99885 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99951 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99812 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.47143 * 180.02562 * 12 10 9 14 14 C 1.46894 * 111.00103 * 180.02562 * 13 12 10 15 15 H 1.08994 * 109.49941 * 324.93455 * 14 13 12 16 16 C 1.53042 * 109.49812 * 204.83408 * 14 13 12 17 17 C 1.53044 * 109.54113 * 178.68417 * 16 14 13 18 18 C 1.53190 * 109.31017 * 61.36608 * 17 16 14 19 19 N 1.46925 * 108.77506 * 305.36486 * 18 17 16 20 20 C 1.34779 * 120.62861 * 233.58826 * 19 18 17 21 21 O 1.21613 * 119.99648 * 172.15098 * 20 19 18 22 22 C 1.47443 * 120.00334 * 352.14336 * 20 19 18 23 23 C 1.37982 * 124.15506 * 172.22814 * 22 20 19 24 24 S 1.72101 * 104.03180 * 179.90721 * 23 22 20 25 25 N 1.56407 * 96.15674 * 0.32814 * 24 23 22 26 26 N 1.27422 * 109.87266 * 359.79924 * 25 24 23 27 27 C 1.46929 * 118.74017 * 53.61501 * 19 18 17 28 28 H 0.97001 * 120.00555 * 359.97438 * 1 2 3 29 29 H 0.96997 * 120.00312 * 359.97438 * 9 7 2 30 30 H 1.09000 * 109.47383 * 60.00565 * 12 10 9 31 31 H 1.09002 * 109.47326 * 300.00031 * 12 10 9 32 32 H 1.00907 * 110.99517 * 303.95344 * 13 12 10 33 33 H 1.09005 * 109.45907 * 298.70325 * 16 14 13 34 34 H 1.08994 * 109.46080 * 58.66148 * 16 14 13 35 35 H 1.08997 * 109.49132 * 301.41614 * 17 16 14 36 36 H 1.08995 * 109.49673 * 181.32081 * 17 16 14 37 37 H 1.09007 * 109.58293 * 185.58007 * 18 17 16 38 38 H 1.08999 * 109.59143 * 65.15295 * 18 17 16 39 39 H 1.07996 * 127.98767 * 0.02562 * 23 22 20 40 40 H 1.09003 * 109.58575 * 186.60669 * 27 19 18 41 41 H 1.08996 * 109.70240 * 66.24430 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 1.4453 2.6527 0.7000 6 1 3.5456 1.4404 0.7000 7 6 2.0089 -1.2032 -0.0005 8 1 1.4690 -2.1386 -0.0005 9 7 3.3799 -1.2031 0.0000 10 6 4.0539 -2.3703 0.0000 11 8 3.4475 -3.4208 -0.0009 12 6 5.5609 -2.3702 0.0000 13 7 6.0507 -3.7551 -0.0006 14 6 7.5191 -3.7942 0.0000 15 1 7.9054 -2.9629 -0.5896 16 6 7.9952 -5.1162 -0.6065 17 6 9.5251 -5.1441 -0.6365 18 6 10.0616 -5.0480 0.7951 19 7 9.4923 -3.8539 1.4344 20 6 10.2934 -2.9332 2.0062 21 8 9.8257 -1.8836 2.4046 22 6 11.7367 -3.1984 2.1490 23 6 12.6575 -2.2640 2.5767 24 16 14.1547 -3.1122 2.5528 25 7 13.5705 -4.4693 2.0397 26 7 12.3112 -4.3645 1.8760 27 6 8.0330 -3.6828 1.4389 28 1 -0.4851 0.8400 0.0004 29 1 3.8649 -0.3631 0.0004 30 1 5.9242 -1.8564 0.8900 31 1 5.9242 -1.8563 -0.8900 32 1 5.6752 -4.2718 0.7806 33 1 7.6286 -5.9459 -0.0020 34 1 7.6104 -5.2093 -1.6220 35 1 9.8929 -4.3004 -1.2203 36 1 9.8631 -6.0758 -1.0900 37 1 11.1485 -4.9677 0.7734 38 1 9.7699 -5.9365 1.3552 39 1 12.4795 -1.2379 2.8626 40 1 7.7813 -2.7017 1.8418 41 1 7.5740 -4.4584 2.0519 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208806211.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:39 Heat of formation + Delta-G solvation = 27.929639 kcal Electronic energy + Delta-G solvation = -26565.858352 eV Core-core repulsion = 22609.372214 eV Total energy + Delta-G solvation = -3956.486138 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.77512 -40.07095 -38.58706 -37.79179 -35.24559 -33.89865 -32.77480 -32.50809 -31.64505 -30.13387 -27.82499 -26.42861 -26.12004 -23.98751 -23.30291 -22.46386 -21.24204 -20.49602 -19.35342 -18.96725 -18.30177 -16.98030 -16.76378 -16.63441 -16.07208 -15.95453 -15.44354 -15.07024 -14.76219 -14.60332 -14.55397 -14.13665 -13.97952 -13.49110 -13.30591 -13.12682 -13.02138 -12.73213 -12.57413 -12.45963 -12.04513 -11.79489 -11.52211 -11.42125 -11.14992 -11.08636 -10.78383 -10.63308 -10.58526 -10.56860 -10.55031 -10.10227 -9.95498 -9.55455 -9.12039 -8.57007 -8.17510 -8.11850 -6.29279 -3.80638 -0.48384 0.36991 0.90240 0.97259 2.52350 2.66845 3.05533 3.09488 3.17253 3.27322 3.75598 4.02031 4.11294 4.12950 4.20631 4.64696 4.67369 4.75222 4.82359 4.85193 4.98066 5.07244 5.22931 5.37221 5.40830 5.57509 5.62679 5.66779 5.72477 5.79210 5.86218 5.94592 6.09284 6.14657 6.21179 6.83913 7.01218 7.07862 7.52320 7.59958 7.65057 8.16202 8.61502 8.96700 9.44380 9.84352 10.83771 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019456 B = 0.002259 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.801656 B =12390.368087 C =13549.779436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.041 3.959 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.304 4.304 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.450 3.550 11 O -0.565 6.565 12 C 0.045 3.955 13 N -0.655 5.655 14 C 0.077 3.923 15 H 0.082 0.918 16 C -0.109 4.109 17 C -0.133 4.133 18 C 0.080 3.920 19 N -0.586 5.586 20 C 0.600 3.400 21 O -0.524 6.524 22 C -0.018 4.018 23 C -0.236 4.236 24 S 0.470 5.530 25 N -0.295 5.295 26 N -0.208 5.208 27 C 0.079 3.921 28 H 0.273 0.727 29 H 0.371 0.629 30 H 0.047 0.953 31 H 0.088 0.912 32 H 0.352 0.648 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.129 0.871 38 H 0.072 0.928 39 H 0.210 0.790 40 H 0.094 0.906 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.934 -5.234 4.220 33.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.236 3.764 11 O -0.447 6.447 12 C -0.088 4.088 13 N -0.287 5.287 14 C -0.035 4.035 15 H 0.100 0.900 16 C -0.147 4.147 17 C -0.171 4.171 18 C -0.044 4.044 19 N -0.318 5.318 20 C 0.383 3.617 21 O -0.400 6.400 22 C -0.165 4.165 23 C -0.393 4.393 24 S 0.606 5.394 25 N -0.275 5.275 26 N -0.078 5.078 27 C -0.045 4.045 28 H 0.084 0.916 29 H 0.203 0.797 30 H 0.065 0.935 31 H 0.106 0.894 32 H 0.172 0.828 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.146 0.854 38 H 0.090 0.910 39 H 0.227 0.773 40 H 0.112 0.888 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 33.363 -6.638 3.573 34.204 hybrid contribution -0.662 2.558 1.003 2.826 sum 32.701 -4.080 4.576 33.271 Atomic orbital electron populations 1.69620 1.05633 1.27487 1.49404 1.25038 0.95501 0.97987 0.97652 0.86677 0.79818 0.84031 0.78919 1.19597 1.20188 1.19451 1.19429 0.79228 0.96627 1.48021 0.86264 1.42212 1.07549 1.06186 1.67031 1.19678 0.88122 0.84576 0.84011 1.90565 1.69430 1.30911 1.53774 1.21795 0.95122 0.90394 1.01499 1.60264 1.04558 1.12722 1.51124 1.21971 0.88298 0.99253 0.93957 0.90024 1.21532 0.93958 0.96758 1.02478 1.21940 0.96297 1.02720 0.96192 1.22711 1.02112 0.86603 0.92929 1.47870 1.06707 1.22359 1.54839 1.16767 0.82613 0.83659 0.78690 1.90864 1.74362 1.24428 1.50323 1.22710 0.98188 0.89637 1.05943 1.28930 0.97938 1.07836 1.04626 1.81590 1.12602 0.99998 1.45184 1.78683 1.07114 1.21002 1.20656 1.71540 1.00499 1.20572 1.15188 1.22690 0.78498 1.03915 0.99359 0.91626 0.79657 0.93480 0.89372 0.82763 0.91450 0.90428 0.91728 0.90152 0.85424 0.90977 0.77336 0.88773 0.90626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.01 13.96 55.50 0.77 -25.23 16 2 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 3 Si 0.88 19.70 27.74 -169.99 -4.71 14.99 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.27 -5.54 6.52 56.52 0.37 -5.17 16 7 C -0.30 -8.72 10.16 -14.93 -0.15 -8.87 16 8 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 9 N -0.59 -14.30 5.09 -10.96 -0.06 -14.35 16 10 C 0.45 10.33 7.82 -10.99 -0.09 10.25 16 11 O -0.56 -15.23 15.78 5.55 0.09 -15.15 16 12 C 0.04 0.75 5.97 -4.98 -0.03 0.72 16 13 N -0.66 -9.97 5.88 -107.87 -0.63 -10.61 16 14 C 0.08 0.91 2.62 -67.59 -0.18 0.73 16 15 H 0.08 1.01 7.80 -51.93 -0.41 0.60 16 16 C -0.11 -1.11 5.49 -26.69 -0.15 -1.25 16 17 C -0.13 -1.10 6.08 -26.61 -0.16 -1.27 16 18 C 0.08 0.71 6.02 -3.71 -0.02 0.68 16 19 N -0.59 -6.34 2.97 -174.02 -0.52 -6.86 16 20 C 0.60 7.09 7.66 -12.51 -0.10 7.00 16 21 O -0.52 -7.64 16.24 5.27 0.09 -7.56 16 22 C -0.02 -0.17 6.62 -83.78 -0.55 -0.73 16 23 C -0.24 -1.49 11.22 30.64 0.34 -1.15 16 24 S 0.47 2.08 23.38 -107.50 -2.51 -0.44 16 25 N -0.29 -2.36 12.49 60.35 0.75 -1.61 16 26 N -0.21 -1.92 7.95 32.73 0.26 -1.66 16 27 C 0.08 0.92 5.70 -3.71 -0.02 0.89 16 28 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.37 7.94 5.76 -40.82 -0.24 7.70 16 30 H 0.05 0.72 7.56 -51.93 -0.39 0.33 16 31 H 0.09 1.35 8.06 -51.93 -0.42 0.93 16 32 H 0.35 5.50 8.11 -39.29 -0.32 5.18 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.13 1.15 4.13 -91.43 -0.38 0.77 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.21 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.09 1.24 6.47 -51.93 -0.34 0.90 16 41 H 0.08 0.82 8.04 -51.93 -0.42 0.40 16 LS Contribution 353.45 15.07 5.33 5.33 Total: -1.00 -35.20 353.45 -7.34 -42.54 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -4.99 Total: 12.53 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: -1.20 Total: 8.06 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: 0.58 Total: -60.31 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: 0.17 Total: -22.70 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -4.71 Total: 14.99 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -2.51 Total: -0.44 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.20 -7.34 -42.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208806211.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.471 kcal (2) G-P(sol) polarization free energy of solvation -35.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds