Wall clock time and date at job start Tue Mar 31 2020 22:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86803 * 119.99606 * 2 1 4 4 H 1.48497 * 109.47519 * 270.00065 * 3 2 1 5 5 H 1.48506 * 109.47160 * 29.99902 * 3 2 1 6 6 H 1.48504 * 109.47294 * 150.00013 * 3 2 1 7 7 C 1.38943 * 120.00420 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99971 * 359.97438 * 7 2 1 9 9 N 1.37101 * 119.99905 * 180.02562 * 7 2 1 10 10 C 1.34783 * 119.99885 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99951 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99812 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.47143 * 180.02562 * 12 10 9 14 14 C 1.46894 * 111.00103 * 180.02562 * 13 12 10 15 15 H 1.08994 * 109.49941 * 324.93455 * 14 13 12 16 16 C 1.53042 * 109.49812 * 204.83408 * 14 13 12 17 17 C 1.53044 * 109.54113 * 178.68417 * 16 14 13 18 18 C 1.53190 * 109.31017 * 61.36608 * 17 16 14 19 19 N 1.46925 * 108.77506 * 305.36486 * 18 17 16 20 20 C 1.34779 * 120.62861 * 233.58826 * 19 18 17 21 21 O 1.21613 * 119.99648 * 172.15098 * 20 19 18 22 22 C 1.47443 * 120.00334 * 352.14336 * 20 19 18 23 23 C 1.37982 * 124.15506 * 172.22814 * 22 20 19 24 24 S 1.72101 * 104.03180 * 179.90721 * 23 22 20 25 25 N 1.56407 * 96.15674 * 0.32814 * 24 23 22 26 26 N 1.27422 * 109.87266 * 359.79924 * 25 24 23 27 27 C 1.46929 * 118.74017 * 53.61501 * 19 18 17 28 28 H 0.97001 * 120.00555 * 359.97438 * 1 2 3 29 29 H 0.96997 * 120.00312 * 359.97438 * 9 7 2 30 30 H 1.09000 * 109.47383 * 60.00565 * 12 10 9 31 31 H 1.09002 * 109.47326 * 300.00031 * 12 10 9 32 32 H 1.00907 * 110.99517 * 303.95344 * 13 12 10 33 33 H 1.09005 * 109.45907 * 298.70325 * 16 14 13 34 34 H 1.08994 * 109.46080 * 58.66148 * 16 14 13 35 35 H 1.08997 * 109.49132 * 301.41614 * 17 16 14 36 36 H 1.08995 * 109.49673 * 181.32081 * 17 16 14 37 37 H 1.09007 * 109.58293 * 185.58007 * 18 17 16 38 38 H 1.08999 * 109.59143 * 65.15295 * 18 17 16 39 39 H 1.07996 * 127.98767 * 0.02562 * 23 22 20 40 40 H 1.09003 * 109.58575 * 186.60669 * 27 19 18 41 41 H 1.08996 * 109.70240 * 66.24430 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 1.4453 2.6527 0.7000 6 1 3.5456 1.4404 0.7000 7 6 2.0089 -1.2032 -0.0005 8 1 1.4690 -2.1386 -0.0005 9 7 3.3799 -1.2031 0.0000 10 6 4.0539 -2.3703 0.0000 11 8 3.4475 -3.4208 -0.0009 12 6 5.5609 -2.3702 0.0000 13 7 6.0507 -3.7551 -0.0006 14 6 7.5191 -3.7942 0.0000 15 1 7.9054 -2.9629 -0.5896 16 6 7.9952 -5.1162 -0.6065 17 6 9.5251 -5.1441 -0.6365 18 6 10.0616 -5.0480 0.7951 19 7 9.4923 -3.8539 1.4344 20 6 10.2934 -2.9332 2.0062 21 8 9.8257 -1.8836 2.4046 22 6 11.7367 -3.1984 2.1490 23 6 12.6575 -2.2640 2.5767 24 16 14.1547 -3.1122 2.5528 25 7 13.5705 -4.4693 2.0397 26 7 12.3112 -4.3645 1.8760 27 6 8.0330 -3.6828 1.4389 28 1 -0.4851 0.8400 0.0004 29 1 3.8649 -0.3631 0.0004 30 1 5.9242 -1.8564 0.8900 31 1 5.9242 -1.8563 -0.8900 32 1 5.6752 -4.2718 0.7806 33 1 7.6286 -5.9459 -0.0020 34 1 7.6104 -5.2093 -1.6220 35 1 9.8929 -4.3004 -1.2203 36 1 9.8631 -6.0758 -1.0900 37 1 11.1485 -4.9677 0.7734 38 1 9.7699 -5.9365 1.3552 39 1 12.4795 -1.2379 2.8626 40 1 7.7813 -2.7017 1.8418 41 1 7.5740 -4.4584 2.0519 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208806211.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:38 Heat of formation + Delta-G solvation = -0.899807 kcal Electronic energy + Delta-G solvation = -26567.108491 eV Core-core repulsion = 22609.372214 eV Total energy + Delta-G solvation = -3957.736277 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.40614 -40.90904 -40.26893 -38.87512 -36.46374 -35.83255 -33.78995 -33.54253 -33.16958 -31.17929 -28.60599 -27.78417 -26.97388 -25.64078 -24.03553 -23.41390 -21.95661 -21.43108 -21.13004 -20.25879 -19.65297 -17.95163 -17.67528 -17.35705 -17.23446 -17.03823 -16.70629 -16.32024 -15.95623 -15.89924 -15.40569 -15.26222 -15.14631 -14.84213 -14.48105 -14.38122 -14.16344 -13.94414 -13.83238 -13.39098 -13.26985 -13.05904 -12.89778 -12.42825 -12.37225 -12.14661 -11.99920 -11.92791 -11.65561 -11.53255 -11.42702 -11.19225 -11.02919 -10.68385 -10.46610 -10.26407 -10.01322 -9.30434 -8.42568 -6.03341 -0.96116 -0.07398 0.23267 0.50441 1.29649 1.34018 1.42896 1.74566 1.88979 1.92661 2.21460 2.63929 2.68160 3.13289 3.32031 3.49724 3.61215 3.75173 3.88611 4.04948 4.09508 4.17549 4.24580 4.28439 4.34300 4.47007 4.55256 4.66115 4.71080 4.89196 4.98521 5.09660 5.25926 5.33580 5.42732 5.51824 5.87954 5.99379 6.09753 6.30610 6.39686 6.57635 6.82823 6.86057 7.37513 7.93147 8.74899 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019456 B = 0.002259 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.801656 B =12390.368087 C =13549.779436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.963 3.037 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.328 4.328 8 H 0.057 0.943 9 N -0.591 5.591 10 C 0.450 3.550 11 O -0.611 6.611 12 C 0.059 3.941 13 N -0.668 5.668 14 C 0.084 3.916 15 H 0.082 0.918 16 C -0.105 4.105 17 C -0.123 4.123 18 C 0.080 3.920 19 N -0.585 5.585 20 C 0.596 3.404 21 O -0.561 6.561 22 C -0.043 4.043 23 C -0.240 4.240 24 S 0.573 5.427 25 N -0.332 5.332 26 N -0.224 5.224 27 C 0.084 3.916 28 H 0.279 0.721 29 H 0.389 0.611 30 H 0.071 0.929 31 H 0.113 0.887 32 H 0.348 0.652 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.100 0.900 37 H 0.134 0.866 38 H 0.077 0.923 39 H 0.225 0.775 40 H 0.078 0.922 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 37.218 -3.729 4.323 37.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.213 4.213 3 Si 0.783 3.217 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.158 1.158 7 C -0.457 4.457 8 H 0.075 0.925 9 N -0.233 5.233 10 C 0.238 3.762 11 O -0.496 6.496 12 C -0.073 4.073 13 N -0.299 5.299 14 C -0.027 4.027 15 H 0.100 0.900 16 C -0.143 4.143 17 C -0.162 4.162 18 C -0.043 4.043 19 N -0.316 5.316 20 C 0.381 3.619 21 O -0.439 6.439 22 C -0.190 4.190 23 C -0.397 4.397 24 S 0.708 5.292 25 N -0.312 5.312 26 N -0.093 5.093 27 C -0.041 4.041 28 H 0.089 0.911 29 H 0.224 0.776 30 H 0.089 0.911 31 H 0.131 0.869 32 H 0.167 0.833 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.119 0.881 37 H 0.150 0.850 38 H 0.096 0.904 39 H 0.242 0.758 40 H 0.097 0.903 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 37.689 -5.171 3.662 38.218 hybrid contribution -1.901 1.981 1.013 2.927 sum 35.788 -3.190 4.675 36.233 Atomic orbital electron populations 1.69795 1.08037 1.29252 1.50219 1.26092 0.96482 1.02634 0.96100 0.85389 0.79395 0.76923 0.79982 1.18058 1.19864 1.15831 1.19011 0.81388 0.94995 1.50329 0.92462 1.42049 1.05916 1.07588 1.67717 1.20865 0.90744 0.83362 0.81217 1.90543 1.71295 1.32645 1.55086 1.21692 0.89868 0.92033 1.03710 1.60297 1.06690 1.11720 1.51223 1.21970 0.86053 1.00317 0.94328 0.89987 1.21504 0.95308 0.95693 1.01837 1.21895 0.94603 1.03773 0.95940 1.22838 1.02417 0.85960 0.93070 1.47952 1.06279 1.22756 1.54656 1.17095 0.83705 0.83146 0.77982 1.90829 1.75336 1.25828 1.51952 1.22468 0.97354 0.90916 1.08301 1.29277 0.98783 1.08429 1.03168 1.81245 1.09481 0.96719 1.41733 1.78363 1.06885 1.23855 1.22105 1.71542 1.01061 1.20701 1.16012 1.22529 0.79365 1.03212 0.98969 0.91102 0.77559 0.91097 0.86943 0.83274 0.91342 0.91075 0.91805 0.88125 0.84966 0.90431 0.75798 0.90321 0.90182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.86 13.96 21.66 0.30 -56.56 16 2 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 3 Si 0.96 39.78 27.74 68.60 1.90 41.68 16 4 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 6 H -0.23 -8.34 6.52 99.48 0.65 -7.69 16 7 C -0.33 -19.55 10.16 84.04 0.85 -18.69 16 8 H 0.06 4.04 7.39 -2.91 -0.02 4.02 16 9 N -0.59 -28.65 5.09 -306.98 -1.56 -30.21 16 10 C 0.45 20.82 7.82 87.65 0.69 21.50 16 11 O -0.61 -34.28 15.78 -3.07 -0.05 -34.33 16 12 C 0.06 1.91 5.97 85.55 0.51 2.42 16 13 N -0.67 -19.84 5.88 -495.18 -2.91 -22.75 16 14 C 0.08 1.89 2.62 45.00 0.12 2.01 16 15 H 0.08 1.87 7.80 -2.39 -0.02 1.85 16 16 C -0.11 -1.99 5.49 30.62 0.17 -1.82 16 17 C -0.12 -1.81 6.08 30.67 0.19 -1.63 16 18 C 0.08 1.30 6.02 86.36 0.52 1.82 16 19 N -0.59 -12.12 2.97 -822.73 -2.45 -14.56 16 20 C 0.60 13.66 7.66 86.67 0.66 14.32 16 21 O -0.56 -16.12 16.24 -4.07 -0.07 -16.19 16 22 C -0.04 -0.75 6.62 41.36 0.27 -0.48 16 23 C -0.24 -2.49 11.22 67.76 0.76 -1.73 16 24 S 0.57 3.29 23.38 -56.49 -1.32 1.97 16 25 N -0.33 -4.60 12.49 37.02 0.46 -4.14 16 26 N -0.22 -3.79 7.95 -50.35 -0.40 -4.19 16 27 C 0.08 1.86 5.70 86.36 0.49 2.36 16 28 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 29 H 0.39 15.81 5.76 -92.71 -0.53 15.28 16 30 H 0.07 2.00 7.56 -2.39 -0.02 1.98 16 31 H 0.11 3.13 8.06 -2.39 -0.02 3.11 16 32 H 0.35 10.86 8.11 -89.69 -0.73 10.13 16 33 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.13 2.18 4.13 -53.44 -0.22 1.96 16 38 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.23 1.46 8.06 -2.91 -0.02 1.43 16 40 H 0.08 2.02 6.47 -2.39 -0.02 2.00 16 41 H 0.08 1.70 8.04 -2.39 -0.02 1.68 16 Total: -1.00 -82.04 353.45 -0.81 -82.85 By element: Atomic # 1 Polarization: 37.12 SS G_CDS: -0.42 Total: 36.69 kcal Atomic # 6 Polarization: 14.03 SS G_CDS: 5.70 Total: 19.73 kcal Atomic # 7 Polarization: -125.86 SS G_CDS: -6.55 Total: -132.41 kcal Atomic # 8 Polarization: -50.40 SS G_CDS: -0.11 Total: -50.51 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 1.90 Total: 41.68 kcal Atomic # 16 Polarization: 3.29 SS G_CDS: -1.32 Total: 1.97 kcal Total: -82.04 -0.81 -82.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208806211.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.950 kcal (2) G-P(sol) polarization free energy of solvation -82.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds