Wall clock time and date at job start Tue Mar 31 2020 22:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86802 * 119.99904 * 2 1 4 4 H 1.48494 * 109.47438 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47324 * 119.99678 * 3 2 1 6 6 H 1.48508 * 109.46975 * 239.99616 * 3 2 1 7 7 C 1.38951 * 120.00398 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00133 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99415 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99540 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00365 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99840 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47236 * 180.02562 * 12 10 9 14 14 C 1.46902 * 111.00145 * 179.97438 * 13 12 10 15 15 H 1.09002 * 109.49612 * 34.93102 * 14 13 12 16 16 C 1.53036 * 109.49914 * 154.99706 * 14 13 12 17 17 C 1.53034 * 109.54102 * 181.31435 * 16 14 13 18 18 C 1.53185 * 109.31422 * 298.63966 * 17 16 14 19 19 N 1.46924 * 108.78102 * 54.63064 * 18 17 16 20 20 C 1.34772 * 120.63567 * 126.41006 * 19 18 17 21 21 O 1.21607 * 120.00105 * 173.49226 * 20 19 18 22 22 C 1.47452 * 119.99958 * 353.50355 * 20 19 18 23 23 C 1.37974 * 124.15592 * 172.36553 * 22 20 19 24 24 S 1.72110 * 104.03272 * 179.97438 * 23 22 20 25 25 N 1.56400 * 96.15337 * 359.97438 * 24 23 22 26 26 N 1.27422 * 109.87602 * 359.74765 * 25 24 23 27 27 C 1.46925 * 118.73623 * 306.39503 * 19 18 17 28 28 H 0.97006 * 120.00316 * 0.02562 * 1 2 3 29 29 H 0.96997 * 120.00523 * 359.97438 * 9 7 2 30 30 H 1.09000 * 109.47161 * 299.99566 * 12 10 9 31 31 H 1.08999 * 109.47424 * 59.99425 * 12 10 9 32 32 H 1.00898 * 111.00044 * 56.04319 * 13 12 10 33 33 H 1.09009 * 109.46269 * 301.33931 * 16 14 13 34 34 H 1.09004 * 109.45894 * 61.30704 * 16 14 13 35 35 H 1.09007 * 109.49340 * 58.58667 * 17 16 14 36 36 H 1.08998 * 109.50447 * 178.68282 * 17 16 14 37 37 H 1.09008 * 109.59218 * 174.42131 * 18 17 16 38 38 H 1.08998 * 109.58791 * 294.70023 * 18 17 16 39 39 H 1.08001 * 127.98379 * 359.94669 * 23 22 20 40 40 H 1.08998 * 109.59197 * 293.82180 * 27 19 18 41 41 H 1.08996 * 109.58868 * 173.38841 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2831 2.7465 -0.0006 5 1 3.1018 1.6965 1.2125 6 1 3.1019 1.6964 -1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2438 -4.8629 0.0000 13 7 2.1984 -5.9794 0.0007 14 6 1.4982 -7.2708 0.0008 15 1 0.5845 -7.1892 -0.5880 16 6 2.4042 -8.3433 -0.6083 17 6 1.6636 -9.6821 -0.6387 18 6 1.3140 -10.1004 0.7929 19 7 0.5654 -9.0112 1.4345 20 6 -0.6317 -9.2452 2.0077 21 8 -1.1867 -8.3654 2.6375 22 6 -1.2683 -10.5682 1.8715 23 6 -2.4116 -10.9506 2.5425 24 16 -2.6902 -12.5625 2.0074 25 7 -1.4524 -12.6391 1.0545 26 7 -0.8152 -11.5361 1.0825 27 6 1.1468 -7.6618 1.4397 28 1 -0.4851 0.8401 -0.0004 29 1 0.3534 -2.3907 0.0005 30 1 0.6169 -4.9209 0.8897 31 1 0.6174 -4.9204 -0.8902 32 1 2.8327 -5.9124 0.7825 33 1 2.6758 -8.0553 -1.6239 34 1 3.3068 -8.4414 -0.0051 35 1 0.7481 -9.5782 -1.2212 36 1 2.3008 -10.4402 -1.0939 37 1 0.7012 -11.0016 0.7710 38 1 2.2300 -10.2951 1.3507 39 1 -2.9965 -10.3721 3.2423 40 1 2.0493 -7.6551 2.0508 41 1 0.4236 -6.9539 1.8444 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208806226.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:41 Heat of formation + Delta-G solvation = 22.892706 kcal Electronic energy + Delta-G solvation = -26527.017741 eV Core-core repulsion = 22570.313186 eV Total energy + Delta-G solvation = -3956.704556 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.75380 -39.99505 -38.43406 -37.67605 -35.14566 -33.83607 -32.70703 -32.43880 -31.20930 -30.02208 -27.77615 -26.29793 -26.03235 -24.11234 -23.25991 -22.42823 -21.18796 -20.42507 -19.22789 -18.88355 -17.85640 -17.02696 -16.77550 -16.38861 -16.03012 -15.95634 -15.33425 -15.03098 -14.61104 -14.51771 -14.42041 -14.14308 -13.79904 -13.71856 -13.33258 -13.12018 -12.93916 -12.62600 -12.48665 -12.19698 -11.62232 -11.54651 -11.43598 -11.35454 -11.02587 -11.00126 -10.69448 -10.59408 -10.52989 -10.48391 -10.42221 -10.18990 -9.95268 -9.47717 -9.04431 -8.43178 -8.03071 -7.93352 -6.38926 -3.79881 -0.44551 0.40456 0.93337 0.99708 2.58640 2.73449 3.22190 3.27662 3.30342 3.32172 3.93163 4.07682 4.15436 4.22314 4.32923 4.71941 4.75435 4.84904 4.90347 4.99232 5.15084 5.19142 5.27666 5.46631 5.49010 5.64990 5.73788 5.82698 5.83681 5.90014 6.01833 6.17567 6.20159 6.29558 6.32778 6.88578 7.08810 7.20380 7.57482 7.62348 7.71640 8.08492 8.63783 9.20152 9.56895 10.08242 10.78719 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.022472 B = 0.002095 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.678813 B =13363.656112 C =14289.154812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.285 1.285 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.441 3.559 11 O -0.584 6.584 12 C 0.047 3.953 13 N -0.655 5.655 14 C 0.076 3.924 15 H 0.081 0.919 16 C -0.110 4.110 17 C -0.127 4.127 18 C 0.062 3.938 19 N -0.585 5.585 20 C 0.599 3.401 21 O -0.524 6.524 22 C -0.016 4.016 23 C -0.237 4.237 24 S 0.473 5.527 25 N -0.295 5.295 26 N -0.208 5.208 27 C 0.080 3.920 28 H 0.272 0.728 29 H 0.393 0.607 30 H 0.046 0.954 31 H 0.087 0.913 32 H 0.351 0.649 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.144 0.856 38 H 0.066 0.934 39 H 0.210 0.790 40 H 0.074 0.926 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.536 -28.271 4.425 29.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.210 1.210 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.227 3.773 11 O -0.468 6.468 12 C -0.085 4.085 13 N -0.286 5.286 14 C -0.035 4.035 15 H 0.099 0.901 16 C -0.148 4.148 17 C -0.166 4.166 18 C -0.061 4.061 19 N -0.316 5.316 20 C 0.381 3.619 21 O -0.399 6.399 22 C -0.163 4.163 23 C -0.393 4.393 24 S 0.608 5.392 25 N -0.275 5.275 26 N -0.077 5.077 27 C -0.044 4.044 28 H 0.082 0.918 29 H 0.226 0.774 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.171 0.829 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.160 0.840 38 H 0.084 0.916 39 H 0.227 0.773 40 H 0.092 0.908 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.981 -29.300 3.223 30.292 hybrid contribution -0.340 2.407 1.442 2.826 sum -7.320 -26.893 4.665 28.259 Atomic orbital electron populations 1.69608 1.05939 1.28259 1.50491 1.25270 0.95637 0.99736 0.97328 0.85912 0.78748 0.80450 0.79065 1.20996 1.19913 1.19883 1.19654 0.93339 0.82235 1.47697 0.87957 1.41860 1.09228 1.04597 1.64279 1.19774 0.88357 0.84687 0.84524 1.90520 1.13724 1.87068 1.55497 1.21760 0.94422 0.90973 1.01373 1.60276 1.18194 0.99251 1.50914 1.21973 0.97487 0.90165 0.93872 0.90091 1.21546 0.98035 0.92849 1.02350 1.21838 1.01018 0.97624 0.96099 1.23009 0.97921 0.91956 0.93211 1.47872 1.18174 1.10635 1.54944 1.16780 0.81050 0.84209 0.79814 1.90868 1.63800 1.44211 1.41042 1.22740 0.96952 0.97551 0.99014 1.28927 1.00774 1.03448 1.06195 1.81576 1.25575 1.05329 1.26685 1.78673 1.08522 1.19332 1.20930 1.71276 1.22801 0.95674 1.17953 1.22694 0.99453 0.82934 0.99283 0.91818 0.77427 0.93640 0.89522 0.82939 0.90513 0.91634 0.91562 0.90343 0.84001 0.91597 0.77299 0.90769 0.88806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.96 13.05 55.50 0.72 -24.23 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.36 29.55 -169.99 -5.02 16.34 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.30 -8.50 9.68 -14.93 -0.14 -8.64 16 8 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 9 N -0.56 -14.58 5.29 -10.96 -0.06 -14.64 16 10 C 0.44 10.61 7.82 -10.99 -0.09 10.52 16 11 O -0.58 -16.02 15.78 5.55 0.09 -15.94 16 12 C 0.05 0.86 5.97 -4.98 -0.03 0.83 16 13 N -0.65 -10.60 5.88 -107.86 -0.63 -11.24 16 14 C 0.08 0.98 2.62 -67.59 -0.18 0.80 16 15 H 0.08 1.08 7.80 -51.93 -0.41 0.68 16 16 C -0.11 -1.20 5.49 -26.69 -0.15 -1.35 16 17 C -0.13 -1.17 6.08 -26.62 -0.16 -1.33 16 18 C 0.06 0.59 6.29 -3.71 -0.02 0.57 16 19 N -0.58 -6.74 2.97 -174.03 -0.52 -7.26 16 20 C 0.60 7.45 7.67 -12.51 -0.10 7.36 16 21 O -0.52 -8.00 16.25 5.27 0.09 -7.92 16 22 C -0.02 -0.16 6.66 -83.78 -0.56 -0.72 16 23 C -0.24 -1.58 11.22 30.64 0.34 -1.24 16 24 S 0.47 2.21 23.38 -107.50 -2.51 -0.30 16 25 N -0.29 -2.44 12.49 60.35 0.75 -1.68 16 26 N -0.21 -1.98 7.88 32.74 0.26 -1.73 16 27 C 0.08 1.00 5.67 -3.71 -0.02 0.98 16 28 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.39 9.76 7.90 -40.82 -0.32 9.44 16 30 H 0.05 0.76 7.57 -51.93 -0.39 0.37 16 31 H 0.09 1.48 8.06 -51.93 -0.42 1.06 16 32 H 0.35 5.79 8.11 -39.29 -0.32 5.47 16 33 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.14 1.36 3.62 -136.68 -0.50 0.86 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.21 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.07 0.87 8.04 -51.93 -0.42 0.45 16 41 H 0.09 1.33 6.53 -51.93 -0.34 0.99 16 LS Contribution 356.37 15.07 5.37 5.37 Total: -1.00 -34.08 356.37 -7.82 -41.90 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -5.16 Total: 13.04 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: -1.20 Total: 8.29 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: 0.53 Total: -60.78 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: 0.17 Total: -23.85 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -2.51 Total: -0.30 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.08 -7.82 -41.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208806226.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.792 kcal (2) G-P(sol) polarization free energy of solvation -34.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds