Wall clock time and date at job start Tue Mar 31 2020 22:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86802 * 119.99904 * 2 1 4 4 H 1.48494 * 109.47438 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47324 * 119.99678 * 3 2 1 6 6 H 1.48508 * 109.46975 * 239.99616 * 3 2 1 7 7 C 1.38951 * 120.00398 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00133 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99415 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99540 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00365 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99840 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47236 * 180.02562 * 12 10 9 14 14 C 1.46902 * 111.00145 * 179.97438 * 13 12 10 15 15 H 1.09002 * 109.49612 * 34.93102 * 14 13 12 16 16 C 1.53036 * 109.49914 * 154.99706 * 14 13 12 17 17 C 1.53034 * 109.54102 * 181.31435 * 16 14 13 18 18 C 1.53185 * 109.31422 * 298.63966 * 17 16 14 19 19 N 1.46924 * 108.78102 * 54.63064 * 18 17 16 20 20 C 1.34772 * 120.63567 * 126.41006 * 19 18 17 21 21 O 1.21607 * 120.00105 * 173.49226 * 20 19 18 22 22 C 1.47452 * 119.99958 * 353.50355 * 20 19 18 23 23 C 1.37974 * 124.15592 * 172.36553 * 22 20 19 24 24 S 1.72110 * 104.03272 * 179.97438 * 23 22 20 25 25 N 1.56400 * 96.15337 * 359.97438 * 24 23 22 26 26 N 1.27422 * 109.87602 * 359.74765 * 25 24 23 27 27 C 1.46925 * 118.73623 * 306.39503 * 19 18 17 28 28 H 0.97006 * 120.00316 * 0.02562 * 1 2 3 29 29 H 0.96997 * 120.00523 * 359.97438 * 9 7 2 30 30 H 1.09000 * 109.47161 * 299.99566 * 12 10 9 31 31 H 1.08999 * 109.47424 * 59.99425 * 12 10 9 32 32 H 1.00898 * 111.00044 * 56.04319 * 13 12 10 33 33 H 1.09009 * 109.46269 * 301.33931 * 16 14 13 34 34 H 1.09004 * 109.45894 * 61.30704 * 16 14 13 35 35 H 1.09007 * 109.49340 * 58.58667 * 17 16 14 36 36 H 1.08998 * 109.50447 * 178.68282 * 17 16 14 37 37 H 1.09008 * 109.59218 * 174.42131 * 18 17 16 38 38 H 1.08998 * 109.58791 * 294.70023 * 18 17 16 39 39 H 1.08001 * 127.98379 * 359.94669 * 23 22 20 40 40 H 1.08998 * 109.59197 * 293.82180 * 27 19 18 41 41 H 1.08996 * 109.58868 * 173.38841 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2831 2.7465 -0.0006 5 1 3.1018 1.6965 1.2125 6 1 3.1019 1.6964 -1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2438 -4.8629 0.0000 13 7 2.1984 -5.9794 0.0007 14 6 1.4982 -7.2708 0.0008 15 1 0.5845 -7.1892 -0.5880 16 6 2.4042 -8.3433 -0.6083 17 6 1.6636 -9.6821 -0.6387 18 6 1.3140 -10.1004 0.7929 19 7 0.5654 -9.0112 1.4345 20 6 -0.6317 -9.2452 2.0077 21 8 -1.1867 -8.3654 2.6375 22 6 -1.2683 -10.5682 1.8715 23 6 -2.4116 -10.9506 2.5425 24 16 -2.6902 -12.5625 2.0074 25 7 -1.4524 -12.6391 1.0545 26 7 -0.8152 -11.5361 1.0825 27 6 1.1468 -7.6618 1.4397 28 1 -0.4851 0.8401 -0.0004 29 1 0.3534 -2.3907 0.0005 30 1 0.6169 -4.9209 0.8897 31 1 0.6174 -4.9204 -0.8902 32 1 2.8327 -5.9124 0.7825 33 1 2.6758 -8.0553 -1.6239 34 1 3.3068 -8.4414 -0.0051 35 1 0.7481 -9.5782 -1.2212 36 1 2.3008 -10.4402 -1.0939 37 1 0.7012 -11.0016 0.7710 38 1 2.2300 -10.2951 1.3507 39 1 -2.9965 -10.3721 3.2423 40 1 2.0493 -7.6551 2.0508 41 1 0.4236 -6.9539 1.8444 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208806226.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:41 Heat of formation + Delta-G solvation = -3.809321 kcal Electronic energy + Delta-G solvation = -26528.175628 eV Core-core repulsion = 22570.313186 eV Total energy + Delta-G solvation = -3957.862443 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.43397 -40.89139 -40.14787 -38.87582 -36.44567 -35.79139 -33.58394 -33.26001 -33.17632 -31.14518 -28.57399 -27.72223 -26.99521 -25.82034 -24.04993 -23.43869 -21.95008 -21.41046 -20.93341 -19.93918 -19.66547 -18.01554 -17.70047 -17.38153 -17.09160 -16.98885 -16.58753 -16.32994 -16.09579 -15.87151 -15.52540 -15.33829 -15.20516 -14.90239 -14.38894 -14.32719 -13.93383 -13.82539 -13.53234 -13.32560 -13.21671 -13.06703 -12.85388 -12.44673 -12.38029 -12.17569 -12.12457 -11.94278 -11.65252 -11.51609 -11.44228 -11.19752 -10.98774 -10.61632 -10.38250 -10.04777 -9.99655 -9.31036 -8.47585 -5.96992 -0.96339 -0.08215 0.21289 0.48971 1.39336 1.40978 1.52455 1.74625 1.89062 2.02236 2.28229 2.62393 2.85667 3.19045 3.40833 3.51358 3.58967 3.74966 3.87918 4.08106 4.12684 4.23996 4.28164 4.29679 4.35888 4.50559 4.55958 4.66314 4.69982 4.90959 4.98937 5.12655 5.26728 5.36644 5.39776 5.46382 5.85212 6.04637 6.09539 6.31937 6.40168 6.57530 6.82497 7.10284 7.53344 8.07994 8.69680 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.022472 B = 0.002095 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.678813 B =13363.656112 C =14289.154812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.015 4.015 3 Si 0.995 3.005 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.335 4.335 8 H 0.081 0.919 9 N -0.573 5.573 10 C 0.439 3.561 11 O -0.620 6.620 12 C 0.063 3.937 13 N -0.663 5.663 14 C 0.083 3.917 15 H 0.076 0.924 16 C -0.104 4.104 17 C -0.118 4.118 18 C 0.061 3.939 19 N -0.585 5.585 20 C 0.595 3.405 21 O -0.563 6.563 22 C -0.042 4.042 23 C -0.241 4.241 24 S 0.579 5.421 25 N -0.331 5.331 26 N -0.223 5.223 27 C 0.086 3.914 28 H 0.278 0.722 29 H 0.396 0.604 30 H 0.061 0.939 31 H 0.102 0.898 32 H 0.348 0.652 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.100 0.900 37 H 0.150 0.850 38 H 0.076 0.924 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.442 -30.047 4.540 31.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.214 4.214 3 Si 0.819 3.181 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.464 4.464 8 H 0.099 0.901 9 N -0.210 5.210 10 C 0.227 3.773 11 O -0.507 6.507 12 C -0.070 4.070 13 N -0.295 5.295 14 C -0.028 4.028 15 H 0.094 0.906 16 C -0.143 4.143 17 C -0.157 4.157 18 C -0.062 4.062 19 N -0.315 5.315 20 C 0.379 3.621 21 O -0.442 6.442 22 C -0.189 4.189 23 C -0.398 4.398 24 S 0.715 5.285 25 N -0.311 5.311 26 N -0.092 5.092 27 C -0.039 4.039 28 H 0.087 0.913 29 H 0.229 0.771 30 H 0.079 0.921 31 H 0.120 0.880 32 H 0.167 0.833 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.119 0.881 37 H 0.166 0.834 38 H 0.095 0.905 39 H 0.242 0.758 40 H 0.099 0.901 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.894 -31.120 3.318 32.276 hybrid contribution -0.169 2.793 1.445 3.149 sum -8.063 -28.326 4.763 29.834 Atomic orbital electron populations 1.69676 1.06927 1.29429 1.50179 1.26096 0.96572 1.02575 0.96190 0.84957 0.77731 0.76427 0.79027 1.19483 1.19582 1.19605 1.19657 0.92771 0.83936 1.50072 0.90114 1.41942 1.09329 1.04788 1.64934 1.20745 0.88226 0.85999 0.82367 1.90486 1.15627 1.87909 1.56665 1.21590 0.94143 0.88489 1.02759 1.60309 1.18209 0.99973 1.50996 1.21976 0.97478 0.89046 0.94266 0.90576 1.21513 0.97975 0.93028 1.01745 1.21792 1.00886 0.97010 0.95988 1.23177 0.98231 0.91501 0.93254 1.47961 1.18243 1.10557 1.54779 1.17144 0.80920 0.84961 0.79069 1.90833 1.64765 1.45727 1.42831 1.22452 0.98399 0.96941 1.01066 1.29276 0.99796 1.05101 1.05597 1.81220 1.21962 1.02186 1.23147 1.78341 1.10580 1.19189 1.22971 1.71251 1.23678 0.95829 1.18401 1.22502 0.99168 0.83423 0.98811 0.91256 0.77065 0.92100 0.88037 0.83270 0.91146 0.91157 0.92145 0.88125 0.83424 0.90538 0.75835 0.90098 0.90794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.94 13.05 21.66 0.28 -50.66 16 2 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 3 Si 1.00 43.69 29.55 68.60 2.03 45.72 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 7 C -0.33 -19.45 9.68 84.04 0.81 -18.63 16 8 H 0.08 4.95 7.16 -2.91 -0.02 4.93 16 9 N -0.57 -30.40 5.29 -306.99 -1.62 -32.02 16 10 C 0.44 21.58 7.82 87.66 0.69 22.27 16 11 O -0.62 -34.98 15.78 -3.06 -0.05 -35.03 16 12 C 0.06 2.28 5.97 85.56 0.51 2.79 16 13 N -0.66 -21.51 5.88 -495.17 -2.91 -24.42 16 14 C 0.08 2.10 2.62 44.99 0.12 2.22 16 15 H 0.08 2.01 7.80 -2.39 -0.02 2.00 16 16 C -0.10 -2.18 5.49 30.62 0.17 -2.01 16 17 C -0.12 -1.99 6.08 30.67 0.19 -1.81 16 18 C 0.06 1.08 6.29 86.36 0.54 1.63 16 19 N -0.58 -13.34 2.97 -822.76 -2.45 -15.78 16 20 C 0.59 14.85 7.67 86.67 0.66 15.51 16 21 O -0.56 -17.61 16.25 -4.05 -0.07 -17.68 16 22 C -0.04 -0.78 6.66 41.36 0.28 -0.51 16 23 C -0.24 -2.79 11.22 67.76 0.76 -2.03 16 24 S 0.58 3.75 23.38 -56.49 -1.32 2.43 16 25 N -0.33 -4.80 12.49 37.02 0.46 -4.34 16 26 N -0.22 -3.98 7.88 -50.34 -0.40 -4.38 16 27 C 0.09 2.13 5.67 86.36 0.49 2.62 16 28 H 0.28 14.39 8.31 -92.70 -0.77 13.62 16 29 H 0.40 20.10 7.90 -92.71 -0.73 19.37 16 30 H 0.06 2.05 7.57 -2.39 -0.02 2.03 16 31 H 0.10 3.42 8.06 -2.39 -0.02 3.40 16 32 H 0.35 11.61 8.11 -89.70 -0.73 10.88 16 33 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.10 1.29 8.14 -2.39 -0.02 1.28 16 37 H 0.15 2.65 3.62 -111.93 -0.41 2.24 16 38 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.22 1.76 8.06 -2.91 -0.02 1.73 16 40 H 0.08 1.89 8.04 -2.39 -0.02 1.87 16 41 H 0.07 2.15 6.53 -2.39 -0.02 2.14 16 Total: -1.00 -75.08 356.37 -1.10 -76.19 By element: Atomic # 1 Polarization: 39.00 SS G_CDS: -0.75 Total: 38.26 kcal Atomic # 6 Polarization: 16.04 SS G_CDS: 5.68 Total: 21.72 kcal Atomic # 7 Polarization: -124.97 SS G_CDS: -6.63 Total: -131.60 kcal Atomic # 8 Polarization: -52.59 SS G_CDS: -0.11 Total: -52.71 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: 3.75 SS G_CDS: -1.32 Total: 2.43 kcal Total: -75.08 -1.10 -76.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208806226.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.376 kcal (2) G-P(sol) polarization free energy of solvation -75.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds