Wall clock time and date at job start Tue Mar 31 2020 23:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.99052 * 2 1 4 4 O 1.43743 * 109.88138 * 238.91918 * 2 1 3 5 5 C 1.44388 * 106.97189 * 214.05938 * 4 2 1 6 6 C 1.54993 * 103.49084 * 40.06239 * 5 4 2 7 7 C 1.54099 * 109.88048 * 121.07991 * 2 1 3 8 8 H 1.08998 * 110.60800 * 240.18799 * 7 2 1 9 9 C 1.50697 * 110.48690 * 2.78719 * 7 2 1 10 10 O 1.21284 * 120.00355 * 84.29013 * 9 7 2 11 11 N 1.34782 * 119.99956 * 264.28849 * 9 7 2 12 12 N 1.40092 * 120.00088 * 179.97438 * 11 9 7 13 13 C 1.34783 * 120.00050 * 180.02562 * 12 11 9 14 14 O 1.21582 * 120.00432 * 180.02562 * 13 12 11 15 15 N 1.34776 * 119.99747 * 359.97438 * 13 12 11 16 16 C 1.46503 * 120.00223 * 179.72635 * 15 13 12 17 17 H 1.09000 * 109.46518 * 325.28254 * 16 15 13 18 18 C 1.50699 * 109.47384 * 205.27512 * 16 15 13 19 19 H 1.07994 * 119.99998 * 0.02562 * 18 16 15 20 20 C 1.37874 * 119.99782 * 179.97438 * 18 16 15 21 21 N 1.31509 * 120.00105 * 0.02562 * 20 18 16 22 22 Si 1.86799 * 119.99800 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47135 * 90.00411 * 22 20 18 24 24 H 1.48501 * 109.47248 * 209.99913 * 22 20 18 25 25 H 1.48504 * 109.47318 * 330.00048 * 22 20 18 26 26 C 1.53003 * 109.46703 * 85.27430 * 16 15 13 27 27 F 1.39892 * 109.47266 * 60.00725 * 26 16 15 28 28 F 1.39905 * 109.46601 * 180.02562 * 26 16 15 29 29 F 1.39898 * 109.47400 * 299.99963 * 26 16 15 30 30 H 1.08993 * 109.47479 * 295.47614 * 1 2 3 31 31 H 1.08996 * 109.47229 * 55.48346 * 1 2 3 32 32 H 1.09006 * 109.46622 * 175.47902 * 1 2 3 33 33 H 1.08998 * 110.61435 * 281.55656 * 5 4 2 34 34 H 1.09007 * 110.61421 * 158.56177 * 5 4 2 35 35 H 1.09005 * 110.90447 * 204.77701 * 6 5 4 36 36 H 1.08995 * 110.93958 * 81.18521 * 6 5 4 37 37 H 0.97006 * 119.99540 * 0.02562 * 11 9 7 38 38 H 0.96996 * 120.00765 * 0.02562 * 12 11 9 39 39 H 0.97000 * 119.99759 * 359.97438 * 15 13 12 40 40 H 0.97009 * 120.00242 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 8 2.0188 -0.6978 -1.1577 5 6 3.2381 -1.3640 -0.7646 6 6 2.9196 -1.8914 0.6576 7 6 2.0540 -0.7481 1.2411 8 1 2.6615 -0.0872 1.8594 9 6 0.9074 -1.3105 2.0411 10 8 0.4261 -2.3823 1.7403 11 7 0.4168 -0.6223 3.0910 12 7 -0.6495 -1.1448 3.8344 13 6 -1.1405 -0.4564 4.8840 14 8 -2.0656 -0.9100 5.5296 15 7 -0.6053 0.7344 5.2187 16 6 -1.1428 1.4855 6.3559 17 1 -2.2199 1.3299 6.4175 18 6 -0.8571 2.9533 6.1687 19 1 -0.3284 3.2927 5.2903 20 6 -1.2716 3.8629 7.1183 21 7 -1.9159 3.4495 8.1877 22 14 -0.9168 5.6822 6.8866 23 1 -2.0396 6.3155 6.1493 24 1 -0.7683 6.3306 8.2143 25 1 0.3395 5.8468 6.1120 26 6 -0.4824 0.9980 7.6470 27 9 0.8999 1.1976 7.5680 28 9 -0.9962 1.7149 8.7330 29 9 -0.7477 -0.3646 7.8208 30 1 -0.3634 0.4420 0.9277 31 1 -0.3633 0.5823 -0.8467 32 1 -0.3633 -1.0246 -0.0810 33 1 4.0685 -0.6586 -0.7355 34 1 3.4587 -2.1906 -1.4401 35 1 3.8333 -2.0223 1.2375 36 1 2.3543 -2.8221 0.6104 37 1 0.8015 0.2351 3.3314 38 1 -1.0345 -2.0020 3.5939 39 1 0.1335 1.0958 4.7044 40 1 -2.2072 4.0894 8.8560 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209329613.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:29 Heat of formation + Delta-G solvation = -205.099828 kcal Electronic energy + Delta-G solvation = -31146.167395 eV Core-core repulsion = 26162.673979 eV Total energy + Delta-G solvation = -4983.493416 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.42755 -46.08211 -45.69011 -41.06377 -39.70471 -38.46316 -35.60996 -34.88487 -33.08587 -32.61942 -31.81571 -30.61882 -28.28600 -26.60631 -24.67933 -23.11012 -22.52345 -22.27798 -20.54452 -20.30795 -19.03505 -17.96507 -17.15519 -17.02177 -16.82721 -16.70802 -16.39483 -16.01323 -15.65166 -15.48092 -15.18226 -14.98382 -14.59713 -14.39877 -14.10611 -13.41227 -13.20874 -12.99851 -12.66862 -12.63003 -12.59959 -12.47983 -12.47522 -12.36612 -12.07394 -11.90309 -11.67175 -11.37500 -11.34783 -11.27379 -11.20990 -10.93161 -10.88462 -10.57503 -10.40536 -10.01547 -9.83217 -9.79768 -8.84458 -8.59562 -8.18397 -6.33252 -4.58594 1.84719 2.21593 3.11869 3.17612 3.20786 3.35050 3.45700 3.50093 3.94319 4.10353 4.13591 4.38515 4.48385 4.65112 4.75767 4.84192 4.85820 5.00508 5.08528 5.14875 5.27683 5.37695 5.52508 5.69069 5.72070 5.76642 5.77528 5.99422 6.09217 6.39464 6.49184 6.54666 6.88488 7.06201 7.32743 7.37506 7.52263 7.81825 8.34989 8.46367 8.83414 9.09999 10.58304 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015004 B = 0.003335 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.673119 B = 8394.835717 C = 9367.051914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.092 3.908 3 H 0.083 0.917 4 O -0.368 6.368 5 C 0.048 3.952 6 C -0.142 4.142 7 C -0.136 4.136 8 H 0.109 0.891 9 C 0.529 3.471 10 O -0.532 6.532 11 N -0.524 5.524 12 N -0.539 5.539 13 C 0.707 3.293 14 O -0.561 6.561 15 N -0.723 5.723 16 C 0.261 3.739 17 H 0.089 0.911 18 C -0.555 4.555 19 H 0.077 0.923 20 C 0.066 3.934 21 N -0.837 5.837 22 Si 0.917 3.083 23 H -0.276 1.276 24 H -0.282 1.282 25 H -0.271 1.271 26 C 0.416 3.584 27 F -0.210 7.210 28 F -0.136 7.136 29 F -0.216 7.216 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.422 0.578 38 H 0.438 0.562 39 H 0.389 0.611 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.331 -4.055 -13.385 17.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.033 3.967 3 H 0.101 0.899 4 O -0.287 6.287 5 C -0.028 4.028 6 C -0.180 4.180 7 C -0.159 4.159 8 H 0.128 0.872 9 C 0.315 3.685 10 O -0.406 6.406 11 N -0.275 5.275 12 N -0.297 5.297 13 C 0.406 3.594 14 O -0.433 6.433 15 N -0.377 5.377 16 C 0.155 3.845 17 H 0.106 0.894 18 C -0.592 4.592 19 H 0.096 0.904 20 C -0.143 4.143 21 N -0.470 5.470 22 Si 0.743 3.257 23 H -0.201 1.201 24 H -0.207 1.207 25 H -0.195 1.195 26 C 0.359 3.641 27 F -0.192 7.192 28 F -0.117 7.117 29 F -0.198 7.198 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.115 0.885 35 H 0.106 0.894 36 H 0.117 0.883 37 H 0.263 0.737 38 H 0.283 0.717 39 H 0.223 0.777 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.095 -4.943 -12.964 16.590 hybrid contribution 0.911 1.132 0.341 1.492 sum 10.006 -3.812 -12.623 16.552 Atomic orbital electron populations 1.22168 0.93155 1.04203 1.03085 1.22620 0.95759 0.95285 0.83004 0.89882 1.88933 1.39709 1.67659 1.32407 1.23566 0.87665 0.96559 0.95042 1.23192 0.99843 0.98786 0.96172 1.22776 0.95615 0.99811 0.97714 0.87242 1.20290 0.84232 0.84984 0.78998 1.90730 1.60321 1.21558 1.68028 1.45018 1.30059 1.23344 1.29068 1.44737 1.30713 1.24709 1.29587 1.15907 0.82506 0.81409 0.79541 1.91037 1.30567 1.69342 1.52327 1.45319 1.38248 1.19386 1.34762 1.19709 0.96298 0.91444 0.77062 0.89361 1.20822 1.41535 0.87857 1.09010 0.90446 1.25072 0.94515 1.00492 0.94237 1.70393 1.33619 1.34460 1.08495 0.86191 0.78881 0.82729 0.77897 1.20137 1.20746 1.19523 1.23144 0.76302 0.73566 0.91075 1.92983 1.34308 1.94941 1.96931 1.93411 1.85576 1.75521 1.57175 1.93081 1.93767 1.36391 1.96572 0.90827 0.91184 0.90684 0.91778 0.88515 0.89411 0.88314 0.73672 0.71675 0.77736 0.91952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.69 8.41 37.16 0.31 -1.38 16 2 C 0.09 0.80 4.05 -26.16 -0.11 0.70 16 3 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 4 O -0.37 -3.77 11.19 -35.23 -0.39 -4.16 16 5 C 0.05 0.34 7.72 38.21 0.29 0.64 16 6 C -0.14 -1.08 6.65 -24.72 -0.16 -1.25 16 7 C -0.14 -1.10 3.43 -90.24 -0.31 -1.41 16 8 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 9 C 0.53 5.98 4.87 -10.98 -0.05 5.93 16 10 O -0.53 -7.75 14.82 5.55 0.08 -7.67 16 11 N -0.52 -6.01 5.83 31.22 0.18 -5.83 16 12 N -0.54 -8.08 6.26 27.63 0.17 -7.91 16 13 C 0.71 13.45 8.22 -86.91 -0.71 12.73 16 14 O -0.56 -12.97 15.76 5.29 0.08 -12.89 16 15 N -0.72 -13.58 4.95 -59.81 -0.30 -13.87 16 16 C 0.26 6.11 2.21 -69.08 -0.15 5.96 16 17 H 0.09 2.34 7.57 -51.93 -0.39 1.94 16 18 C -0.56 -13.23 8.46 -34.44 -0.29 -13.52 16 19 H 0.08 1.70 7.74 -52.49 -0.41 1.29 16 20 C 0.07 1.64 5.20 -17.82 -0.09 1.54 16 21 N -0.84 -22.03 9.50 55.43 0.53 -21.50 16 22 Si 0.92 19.06 29.54 -169.99 -5.02 14.04 16 23 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 24 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 25 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 26 C 0.42 10.22 2.81 37.16 0.10 10.33 16 27 F -0.21 -4.90 16.94 2.25 0.04 -4.86 16 28 F -0.14 -3.63 12.91 2.25 0.03 -3.60 16 29 F -0.22 -5.36 15.69 2.25 0.04 -5.32 16 30 H 0.07 0.72 7.09 -51.93 -0.37 0.36 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.91 7.06 -51.93 -0.37 0.55 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.10 0.97 6.93 -51.93 -0.36 0.61 16 37 H 0.42 3.92 6.70 -182.60 -1.22 2.69 16 38 H 0.44 6.58 8.10 -182.61 -1.48 5.10 16 39 H 0.39 5.96 6.46 -40.82 -0.26 5.69 16 40 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 341.56 15.07 5.15 5.15 Total: -1.00 -31.60 341.56 -7.12 -38.71 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -6.53 Total: 9.46 kcal Atomic # 6 Polarization: 21.44 SS G_CDS: -1.17 Total: 20.26 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: 0.59 Total: -49.11 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.23 Total: -24.72 kcal Atomic # 9 Polarization: -13.88 SS G_CDS: 0.10 Total: -13.78 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.02 Total: 14.04 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.60 -7.12 -38.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209329613.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.385 kcal (2) G-P(sol) polarization free energy of solvation -31.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds